Wall clock time and date at job start Tue Mar 31 2020 18:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35315 * 126.66659 * 2 1 4 4 C 1.42270 * 103.91943 * 179.97438 * 3 2 1 5 5 C 1.48334 * 126.93673 * 180.02562 * 4 3 2 6 6 O 1.21493 * 120.00177 * 353.28568 * 5 4 3 7 7 N 1.34774 * 120.00032 * 173.28684 * 5 4 3 8 8 C 1.46930 * 120.64464 * 173.53223 * 7 5 4 9 9 C 1.53195 * 108.76858 * 126.59316 * 8 7 5 10 10 C 1.52997 * 109.34390 * 54.58972 * 9 8 7 11 11 C 1.52985 * 109.63404 * 298.77975 * 10 9 8 12 12 C 1.46936 * 120.64154 * 353.81343 * 7 5 4 13 13 C 1.53260 * 109.35847 * 178.83590 * 10 9 8 14 14 N 1.47151 * 108.40711 * 187.91093 * 13 10 9 15 15 C 1.36932 * 120.98997 * 230.49620 * 14 13 10 16 16 H 1.08000 * 120.00291 * 152.88245 * 15 14 13 17 17 C 1.38809 * 120.00101 * 332.88352 * 15 14 13 18 18 N 1.31627 * 119.99827 * 343.75292 * 17 15 14 19 19 Si 1.86801 * 120.00325 * 163.74900 * 17 15 14 20 20 H 1.48496 * 109.46983 * 90.00062 * 19 17 15 21 21 H 1.48501 * 109.47191 * 210.00196 * 19 17 15 22 22 H 1.48498 * 109.46881 * 330.00303 * 19 17 15 23 23 C 1.47161 * 118.02660 * 50.47696 * 14 13 10 24 24 C 1.53294 * 108.37173 * 309.40645 * 23 14 13 25 25 O 1.42895 * 109.55014 * 59.03797 * 10 9 8 26 26 N 1.30988 * 106.12671 * 0.25896 * 4 3 2 27 27 O 1.20902 * 111.43391 * 359.53815 * 26 4 3 28 28 H 1.08998 * 109.47380 * 89.99730 * 1 2 3 29 29 H 1.08991 * 109.47627 * 210.00241 * 1 2 3 30 30 H 1.09011 * 109.47011 * 330.00191 * 1 2 3 31 31 H 1.08003 * 128.04018 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.59071 * 246.38118 * 8 7 5 33 33 H 1.08996 * 109.58745 * 6.81226 * 8 7 5 34 34 H 1.08997 * 109.49062 * 294.62329 * 9 8 7 35 35 H 1.09004 * 109.48752 * 174.54968 * 9 8 7 36 36 H 1.09005 * 109.48733 * 301.24873 * 11 10 9 37 37 H 1.08992 * 109.51143 * 181.18448 * 11 10 9 38 38 H 1.08995 * 109.58641 * 353.18962 * 12 7 5 39 39 H 1.09004 * 109.58738 * 113.46615 * 12 7 5 40 40 H 1.09000 * 109.67985 * 307.64267 * 13 10 9 41 41 H 1.08997 * 109.67201 * 68.14836 * 13 10 9 42 42 H 0.97000 * 119.99937 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.68051 * 69.12528 * 23 14 13 44 44 H 1.08995 * 109.68572 * 189.68068 * 23 14 13 45 45 H 1.08999 * 109.51155 * 172.27346 * 24 23 14 46 46 H 1.09004 * 109.51294 * 292.42379 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5353 0.0006 5 6 4.9076 1.2840 0.0014 6 8 4.9046 2.4927 -0.1214 7 7 6.0744 0.6235 0.1384 8 6 7.3554 1.3296 0.0001 9 6 8.2049 1.0579 1.2457 10 6 8.3381 -0.4526 1.4487 11 6 6.9534 -1.0665 1.6635 12 6 6.0900 -0.8180 0.4228 13 6 9.2120 -0.7250 2.6779 14 7 9.4840 -2.1696 2.7438 15 6 9.2731 -2.8748 3.8984 16 1 9.0462 -3.9297 3.8532 17 6 9.3509 -2.2338 5.1272 18 7 9.9291 -1.0549 5.2191 19 14 8.6349 -3.0441 6.6505 20 1 9.6748 -3.8812 7.3009 21 1 8.1772 -1.9974 7.5992 22 1 7.4837 -3.8979 6.2621 23 6 9.9891 -2.8341 1.5318 24 6 9.0748 -2.4606 0.3594 25 8 8.9474 -1.0380 0.2963 26 7 3.4761 -0.7659 -0.0048 27 8 2.3073 -1.0750 0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5139 31 1 2.0302 2.1272 0.0004 32 1 7.8785 0.9678 -0.8850 33 1 7.1743 2.4005 -0.0921 34 1 7.7240 1.5012 2.1177 35 1 9.1943 1.4959 1.1137 36 1 6.4825 -0.6065 2.5324 37 1 7.0524 -2.1393 1.8288 38 1 5.0736 -1.1646 0.6094 39 1 6.5081 -1.3540 -0.4293 40 1 10.1509 -0.1784 2.5892 41 1 8.6867 -0.4084 3.5789 42 1 9.9838 -0.6072 6.0778 43 1 11.0056 -2.4990 1.3259 44 1 9.9801 -3.9147 1.6747 45 1 9.5069 -2.8290 -0.5710 46 1 8.0918 -2.9079 0.5073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949291515.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:29 Heat of formation + Delta-G solvation = 27.231789 kcal Electronic energy + Delta-G solvation = -30609.156470 eV Core-core repulsion = 26503.883595 eV Total energy + Delta-G solvation = -4105.272875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.26086 -40.30721 -38.87585 -36.15272 -34.41420 -34.35443 -33.75456 -32.26943 -31.25118 -30.78687 -28.40665 -28.15566 -26.70969 -25.04360 -23.66847 -23.11877 -22.86616 -22.41333 -20.74827 -19.48132 -18.57635 -18.03271 -17.49949 -16.97813 -16.86799 -15.91072 -15.51463 -15.22696 -14.72827 -14.52722 -14.32886 -14.19568 -13.97890 -13.70834 -13.63411 -13.60018 -13.54109 -13.20262 -12.92064 -12.79442 -12.35250 -12.27286 -11.79953 -11.60428 -11.34134 -11.01545 -10.92526 -10.86938 -10.66275 -10.59354 -10.57030 -10.32188 -10.28241 -10.00829 -9.89077 -9.63623 -9.39161 -9.00706 -8.54758 -8.46950 -6.71117 -5.84507 -3.28334 0.95586 1.48087 2.65514 2.90760 3.10292 3.32725 3.40204 3.41715 3.79722 4.21459 4.33614 4.44562 4.68625 4.79484 4.90122 5.00716 5.12047 5.16614 5.26239 5.34255 5.36298 5.42750 5.46462 5.50991 5.62054 5.69078 5.78823 5.80666 5.91423 5.97719 6.06257 6.09043 6.22777 6.29428 6.37629 6.53141 6.55946 6.69996 6.77612 6.83522 7.09731 7.36646 7.49380 7.70875 7.81053 7.95981 8.07241 8.34055 9.11599 9.74623 10.32521 11.23259 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.003684 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.978680 B = 7598.019205 C = 8533.087053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.034 4.034 3 C -0.186 4.186 4 C -0.016 4.016 5 C 0.594 3.406 6 O -0.534 6.534 7 N -0.586 5.586 8 C 0.118 3.882 9 C -0.115 4.115 10 C 0.095 3.905 11 C -0.144 4.144 12 C 0.092 3.908 13 C 0.159 3.841 14 N -0.593 5.593 15 C -0.253 4.253 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.901 3.099 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.110 3.890 24 C 0.046 3.954 25 O -0.381 6.381 26 N -0.325 5.325 27 O 0.113 5.887 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.180 0.820 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.092 0.908 42 H 0.255 0.745 43 H 0.025 0.975 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.037 2.432 -11.972 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 C -0.208 4.208 4 C -0.175 4.175 5 C 0.379 3.621 6 O -0.410 6.410 7 N -0.318 5.318 8 C -0.003 4.003 9 C -0.153 4.153 10 C 0.054 3.946 11 C -0.183 4.183 12 C -0.031 4.031 13 C 0.033 3.967 14 N -0.316 5.316 15 C -0.383 4.383 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.731 3.269 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.016 4.016 24 C -0.032 4.032 25 O -0.301 6.301 26 N -0.029 5.029 27 O 0.041 5.959 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.197 0.803 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.027 2.276 -12.030 19.383 hybrid contribution -0.509 0.064 1.188 1.294 sum -15.536 2.340 -10.841 19.089 Atomic orbital electron populations 1.20371 0.83497 1.04943 1.04280 1.24489 0.96505 0.85533 1.03133 1.22415 0.89713 1.01489 1.07210 1.23543 0.96808 0.90059 1.07063 1.16970 0.81552 0.86052 0.77497 1.90761 1.86348 1.12687 1.51182 1.48023 1.05339 1.10576 1.67900 1.21666 0.82045 0.97646 0.98981 1.21840 1.00534 0.95047 0.97915 1.22167 0.92241 0.91471 0.88720 1.22311 0.95632 1.03614 0.96701 1.22401 1.02960 0.79038 0.98657 1.21343 0.95948 0.84862 0.94503 1.44042 1.74992 1.04789 1.07811 1.19147 1.41854 0.93911 0.83361 0.91538 1.25046 0.99296 0.97560 0.97593 1.70019 1.44319 1.16043 1.24258 0.86317 0.79111 0.78493 0.83006 1.21311 1.21514 1.20439 1.21588 0.95096 0.97064 0.87893 1.23017 0.99336 0.81912 0.98981 1.87775 1.81503 1.20242 1.40571 1.74144 0.96557 1.15468 1.16695 1.84812 1.11439 1.33698 1.65936 0.89223 0.89550 0.88807 0.80299 0.90409 0.89240 0.90336 0.89848 0.91307 0.89011 0.87353 0.91084 0.95498 0.89031 0.93540 0.95755 0.92155 0.90304 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.45 36.01 0.38 0.07 16 2 C -0.03 -0.30 7.47 -35.35 -0.26 -0.56 16 3 C -0.19 -2.03 10.93 -39.08 -0.43 -2.46 16 4 C -0.02 -0.23 6.88 -82.52 -0.57 -0.80 16 5 C 0.59 9.72 7.71 -12.11 -0.09 9.63 16 6 O -0.53 -9.69 16.38 5.37 0.09 -9.60 16 7 N -0.59 -9.43 2.97 -173.69 -0.52 -9.95 16 8 C 0.12 1.83 6.21 -3.71 -0.02 1.81 16 9 C -0.11 -1.93 5.10 -26.63 -0.14 -2.07 16 10 C 0.09 1.81 0.68 -90.49 -0.06 1.74 16 11 C -0.14 -2.63 4.33 -26.64 -0.12 -2.74 16 12 C 0.09 1.46 5.90 -3.71 -0.02 1.44 16 13 C 0.16 3.75 4.09 -3.55 -0.01 3.73 16 14 N -0.59 -14.54 2.55 -171.85 -0.44 -14.98 16 15 C -0.25 -6.78 9.64 -15.06 -0.15 -6.93 16 16 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 18 N -0.90 -25.82 11.17 55.49 0.62 -25.20 16 19 Si 0.90 21.41 29.58 -169.99 -5.03 16.38 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.11 2.28 6.73 -3.53 -0.02 2.26 16 24 C 0.05 0.80 6.60 37.31 0.25 1.05 16 25 O -0.38 -7.15 9.00 -35.23 -0.32 -7.47 16 26 N -0.32 -4.45 8.65 33.29 0.29 -4.17 16 27 O 0.11 1.28 11.18 17.24 0.19 1.48 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.18 1.63 8.06 -52.48 -0.42 1.20 16 32 H 0.08 1.18 7.82 -51.93 -0.41 0.77 16 33 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.09 1.80 6.16 -51.93 -0.32 1.48 16 38 H 0.11 1.70 4.18 -57.30 -0.24 1.46 16 39 H 0.07 1.13 7.83 -51.93 -0.41 0.72 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 2.40 6.19 -51.93 -0.32 2.07 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.05 0.80 6.29 -51.93 -0.33 0.47 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -31.91 361.43 -7.60 -39.50 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.57 Total: 2.36 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -1.36 Total: 6.20 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.05 Total: -54.29 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.04 Total: -15.59 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.91 -7.60 -39.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949291515.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.734 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds