Wall clock time and date at job start Tue Mar 31 2020 18:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35315 * 126.66659 * 2 1 4 4 C 1.42270 * 103.91943 * 179.97438 * 3 2 1 5 5 C 1.48334 * 126.93673 * 180.02562 * 4 3 2 6 6 O 1.21493 * 120.00177 * 353.28568 * 5 4 3 7 7 N 1.34774 * 120.00032 * 173.28684 * 5 4 3 8 8 C 1.46930 * 120.64464 * 173.53223 * 7 5 4 9 9 C 1.53195 * 108.76858 * 126.59316 * 8 7 5 10 10 C 1.52997 * 109.34390 * 54.58972 * 9 8 7 11 11 C 1.52985 * 109.63404 * 298.77975 * 10 9 8 12 12 C 1.46936 * 120.64154 * 353.81343 * 7 5 4 13 13 C 1.53260 * 109.35847 * 178.83590 * 10 9 8 14 14 N 1.47151 * 108.40711 * 187.91093 * 13 10 9 15 15 C 1.36932 * 120.98997 * 230.49620 * 14 13 10 16 16 H 1.08000 * 120.00291 * 152.88245 * 15 14 13 17 17 C 1.38809 * 120.00101 * 332.88352 * 15 14 13 18 18 N 1.31627 * 119.99827 * 343.75292 * 17 15 14 19 19 Si 1.86801 * 120.00325 * 163.74900 * 17 15 14 20 20 H 1.48496 * 109.46983 * 90.00062 * 19 17 15 21 21 H 1.48501 * 109.47191 * 210.00196 * 19 17 15 22 22 H 1.48498 * 109.46881 * 330.00303 * 19 17 15 23 23 C 1.47161 * 118.02660 * 50.47696 * 14 13 10 24 24 C 1.53294 * 108.37173 * 309.40645 * 23 14 13 25 25 O 1.42895 * 109.55014 * 59.03797 * 10 9 8 26 26 N 1.30988 * 106.12671 * 0.25896 * 4 3 2 27 27 O 1.20902 * 111.43391 * 359.53815 * 26 4 3 28 28 H 1.08998 * 109.47380 * 89.99730 * 1 2 3 29 29 H 1.08991 * 109.47627 * 210.00241 * 1 2 3 30 30 H 1.09011 * 109.47011 * 330.00191 * 1 2 3 31 31 H 1.08003 * 128.04018 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.59071 * 246.38118 * 8 7 5 33 33 H 1.08996 * 109.58745 * 6.81226 * 8 7 5 34 34 H 1.08997 * 109.49062 * 294.62329 * 9 8 7 35 35 H 1.09004 * 109.48752 * 174.54968 * 9 8 7 36 36 H 1.09005 * 109.48733 * 301.24873 * 11 10 9 37 37 H 1.08992 * 109.51143 * 181.18448 * 11 10 9 38 38 H 1.08995 * 109.58641 * 353.18962 * 12 7 5 39 39 H 1.09004 * 109.58738 * 113.46615 * 12 7 5 40 40 H 1.09000 * 109.67985 * 307.64267 * 13 10 9 41 41 H 1.08997 * 109.67201 * 68.14836 * 13 10 9 42 42 H 0.97000 * 119.99937 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.68051 * 69.12528 * 23 14 13 44 44 H 1.08995 * 109.68572 * 189.68068 * 23 14 13 45 45 H 1.08999 * 109.51155 * 172.27346 * 24 23 14 46 46 H 1.09004 * 109.51294 * 292.42379 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5353 0.0006 5 6 4.9076 1.2840 0.0014 6 8 4.9046 2.4927 -0.1214 7 7 6.0744 0.6235 0.1384 8 6 7.3554 1.3296 0.0001 9 6 8.2049 1.0579 1.2457 10 6 8.3381 -0.4526 1.4487 11 6 6.9534 -1.0665 1.6635 12 6 6.0900 -0.8180 0.4228 13 6 9.2120 -0.7250 2.6779 14 7 9.4840 -2.1696 2.7438 15 6 9.2731 -2.8748 3.8984 16 1 9.0462 -3.9297 3.8532 17 6 9.3509 -2.2338 5.1272 18 7 9.9291 -1.0549 5.2191 19 14 8.6349 -3.0441 6.6505 20 1 9.6748 -3.8812 7.3009 21 1 8.1772 -1.9974 7.5992 22 1 7.4837 -3.8979 6.2621 23 6 9.9891 -2.8341 1.5318 24 6 9.0748 -2.4606 0.3594 25 8 8.9474 -1.0380 0.2963 26 7 3.4761 -0.7659 -0.0048 27 8 2.3073 -1.0750 0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5139 31 1 2.0302 2.1272 0.0004 32 1 7.8785 0.9678 -0.8850 33 1 7.1743 2.4005 -0.0921 34 1 7.7240 1.5012 2.1177 35 1 9.1943 1.4959 1.1137 36 1 6.4825 -0.6065 2.5324 37 1 7.0524 -2.1393 1.8288 38 1 5.0736 -1.1646 0.6094 39 1 6.5081 -1.3540 -0.4293 40 1 10.1509 -0.1784 2.5892 41 1 8.6867 -0.4084 3.5789 42 1 9.9838 -0.6072 6.0778 43 1 11.0056 -2.4990 1.3259 44 1 9.9801 -3.9147 1.6747 45 1 9.5069 -2.8290 -0.5710 46 1 8.0918 -2.9079 0.5073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949291515.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:28 Heat of formation + Delta-G solvation = 7.514564 kcal Electronic energy + Delta-G solvation = -30610.011473 eV Core-core repulsion = 26503.883595 eV Total energy + Delta-G solvation = -4106.127878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.18025 -41.70623 -40.33032 -37.59595 -36.21053 -35.29484 -34.61805 -33.62592 -33.20807 -32.16671 -29.97508 -28.74177 -28.47762 -26.36418 -25.27924 -24.47586 -24.30114 -23.55292 -22.22713 -20.85356 -19.97724 -18.96452 -18.83606 -18.47594 -18.09894 -17.24583 -17.15236 -16.63425 -16.27811 -16.07697 -15.87588 -15.43608 -15.32332 -15.24383 -14.77768 -14.67096 -14.57463 -14.44111 -14.00337 -13.86895 -13.82002 -13.32878 -13.24429 -13.06249 -12.83980 -12.75566 -12.50595 -12.35167 -12.31933 -12.29137 -12.14005 -11.75932 -11.68914 -11.59277 -11.34554 -11.00146 -10.73923 -10.48511 -10.36474 -9.84691 -8.70513 -7.91159 -5.38412 -0.02091 0.65876 1.42761 1.44547 1.53650 1.59746 1.93241 2.05909 2.45405 2.73896 2.85426 3.22649 3.36216 3.49345 3.68266 3.87829 3.90069 3.96502 4.00072 4.03324 4.23231 4.28872 4.33115 4.39295 4.46663 4.53270 4.64368 4.74570 4.76697 4.78979 4.81352 4.84042 4.89221 4.91037 4.94766 5.02963 5.10156 5.21827 5.26306 5.27043 5.38193 5.53417 5.59968 6.09801 6.28862 6.40224 6.71009 7.04361 7.06197 7.75412 8.29852 9.14165 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.003684 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.978680 B = 7598.019205 C = 8533.087053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.010 4.010 3 C -0.200 4.200 4 C -0.044 4.044 5 C 0.592 3.408 6 O -0.557 6.557 7 N -0.591 5.591 8 C 0.126 3.874 9 C -0.111 4.111 10 C 0.106 3.894 11 C -0.134 4.134 12 C 0.105 3.895 13 C 0.170 3.830 14 N -0.609 5.609 15 C -0.260 4.260 16 H 0.071 0.929 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.964 3.036 20 H -0.284 1.284 21 H -0.294 1.294 22 H -0.268 1.268 23 C 0.104 3.896 24 C 0.051 3.949 25 O -0.381 6.381 26 N -0.345 5.345 27 O 0.117 5.883 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.194 0.806 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.078 0.922 40 H -0.005 1.005 41 H 0.059 0.941 42 H 0.250 0.750 43 H 0.014 0.986 44 H 0.070 0.930 45 H 0.117 0.883 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.607 1.484 -13.424 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 C -0.223 4.223 4 C -0.201 4.201 5 C 0.379 3.621 6 O -0.435 6.435 7 N -0.322 5.322 8 C 0.004 3.996 9 C -0.150 4.150 10 C 0.066 3.934 11 C -0.173 4.173 12 C -0.017 4.017 13 C 0.044 3.956 14 N -0.334 5.334 15 C -0.390 4.390 16 H 0.089 0.911 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.792 3.208 20 H -0.211 1.211 21 H -0.221 1.221 22 H -0.193 1.193 23 C -0.021 4.021 24 C -0.026 4.026 25 O -0.300 6.300 26 N -0.048 5.048 27 O 0.044 5.956 28 H 0.129 0.871 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.211 0.789 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.134 0.866 39 H 0.096 0.904 40 H 0.013 0.987 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.088 0.912 45 H 0.135 0.865 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.587 1.303 -13.513 22.217 hybrid contribution 0.259 0.307 1.616 1.666 sum -17.328 1.610 -11.897 21.080 Atomic orbital electron populations 1.20686 0.79707 1.06571 1.06056 1.25281 0.98096 0.83902 1.00029 1.22673 0.88622 1.02849 1.08137 1.23471 0.96918 0.90671 1.09071 1.17273 0.82221 0.85954 0.76677 1.90734 1.86843 1.13676 1.52267 1.48084 1.05626 1.10585 1.67947 1.21609 0.81742 0.98026 0.98210 1.21795 1.01246 0.93405 0.98527 1.21904 0.91667 0.92981 0.86889 1.22155 0.95335 1.02394 0.97385 1.22274 1.02863 0.79151 0.97412 1.21105 0.94822 0.84318 0.95357 1.44295 1.75472 1.05086 1.08510 1.19489 1.40865 0.94290 0.84337 0.91094 1.25789 1.00059 0.98236 1.00354 1.70181 1.45978 1.17534 1.24454 0.85328 0.78565 0.77441 0.79478 1.21058 1.22079 1.19281 1.21786 0.95269 0.97408 0.87632 1.23084 0.99167 0.81237 0.99120 1.87785 1.81398 1.21071 1.39726 1.74052 0.97871 1.15291 1.17606 1.84770 1.11041 1.34528 1.65289 0.87136 0.88113 0.86936 0.78903 0.89442 0.88756 0.91197 0.89309 0.92991 0.90247 0.86622 0.90361 0.98710 0.92270 0.94134 0.96770 0.91151 0.86547 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.45 71.24 0.74 0.44 16 2 C -0.01 -0.15 7.47 25.01 0.19 0.04 16 3 C -0.20 -4.02 10.93 22.60 0.25 -3.77 16 4 C -0.04 -1.22 6.88 42.96 0.30 -0.93 16 5 C 0.59 19.14 7.71 86.93 0.67 19.81 16 6 O -0.56 -20.12 16.38 -3.69 -0.06 -20.18 16 7 N -0.59 -18.68 2.97 -821.73 -2.44 -21.12 16 8 C 0.13 3.81 6.21 86.36 0.54 4.35 16 9 C -0.11 -3.79 5.10 30.66 0.16 -3.63 16 10 C 0.11 4.10 0.68 -10.71 -0.01 4.09 16 11 C -0.13 -4.91 4.33 30.65 0.13 -4.78 16 12 C 0.11 3.27 5.90 86.36 0.51 3.78 16 13 C 0.17 8.31 4.09 86.34 0.35 8.67 16 14 N -0.61 -30.46 2.55 -697.61 -1.78 -32.24 16 15 C -0.26 -14.10 9.64 84.03 0.81 -13.29 16 16 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 17 C -0.05 -2.72 4.95 84.86 0.42 -2.30 16 18 N -0.94 -55.54 11.17 21.65 0.24 -55.30 16 19 Si 0.96 44.70 29.58 68.60 2.03 46.72 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 C 0.10 4.28 6.73 86.35 0.58 4.87 16 24 C 0.05 1.71 6.60 72.08 0.48 2.19 16 25 O -0.38 -13.83 9.00 -148.98 -1.34 -15.17 16 26 N -0.34 -9.04 8.65 -49.52 -0.43 -9.46 16 27 O 0.12 2.42 11.18 71.88 0.80 3.23 16 28 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.09 2.51 7.82 -2.39 -0.02 2.49 16 33 H 0.09 2.81 7.00 -2.39 -0.02 2.79 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 36 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.08 3.10 6.16 -2.39 -0.01 3.09 16 38 H 0.12 3.53 4.18 -13.00 -0.05 3.47 16 39 H 0.08 2.34 7.83 -2.39 -0.02 2.32 16 40 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.06 3.27 6.19 -2.39 -0.01 3.25 16 42 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 43 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 44 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 45 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 46 H 0.05 1.74 6.29 -2.39 -0.01 1.73 16 Total: -1.00 -71.09 361.43 4.09 -67.00 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.96 Total: 17.00 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 6.11 Total: 19.52 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -4.41 Total: -118.12 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.60 Total: -32.12 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.09 4.09 -67.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949291515.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.510 kcal (2) G-P(sol) polarization free energy of solvation -71.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds