Wall clock time and date at job start Tue Mar 31 2020 19:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41265 * 126.70233 * 2 1 4 4 C 1.36830 * 103.84439 * 180.02562 * 3 2 1 5 5 C 1.47508 * 126.94292 * 179.97438 * 4 3 2 6 6 O 1.21586 * 120.00069 * 7.09108 * 5 4 3 7 7 N 1.34776 * 120.00061 * 187.08777 * 5 4 3 8 8 C 1.46929 * 120.63908 * 5.52163 * 7 5 4 9 9 C 1.53624 * 108.54057 * 126.29529 * 8 7 5 10 10 C 1.53008 * 109.27378 * 54.80101 * 9 8 7 11 11 C 1.52980 * 109.63030 * 298.66167 * 10 9 8 12 12 C 1.46931 * 120.64457 * 185.79716 * 7 5 4 13 13 C 1.53259 * 109.35894 * 178.71832 * 10 9 8 14 14 N 1.47154 * 108.40766 * 187.91351 * 13 10 9 15 15 C 1.36934 * 120.98806 * 230.49939 * 14 13 10 16 16 H 1.08003 * 120.00367 * 26.38337 * 15 14 13 17 17 C 1.38818 * 119.99700 * 206.38565 * 15 14 13 18 18 N 1.31614 * 119.99951 * 15.59858 * 17 15 14 19 19 Si 1.86797 * 119.99462 * 195.59668 * 17 15 14 20 20 H 1.48505 * 109.46966 * 94.95047 * 19 17 15 21 21 H 1.48505 * 109.47125 * 214.94526 * 19 17 15 22 22 H 1.48496 * 109.47724 * 334.94864 * 19 17 15 23 23 C 1.47154 * 118.02496 * 50.47510 * 14 13 10 24 24 C 1.53296 * 108.37273 * 309.40941 * 23 14 13 25 25 O 1.42891 * 109.54555 * 58.92129 * 10 9 8 26 26 O 1.34645 * 106.11133 * 0.02562 * 4 3 2 27 27 N 1.20884 * 111.46881 * 359.97438 * 26 4 3 28 28 H 1.08997 * 109.47363 * 269.98862 * 1 2 3 29 29 H 1.09002 * 109.46988 * 29.98477 * 1 2 3 30 30 H 1.09004 * 109.46994 * 149.98552 * 1 2 3 31 31 H 1.08000 * 128.08026 * 0.02846 * 3 2 1 32 32 H 1.09003 * 109.58705 * 246.11818 * 8 7 5 33 33 H 1.08999 * 109.59311 * 6.55102 * 8 7 5 34 34 H 1.09001 * 109.62674 * 294.80363 * 9 8 7 35 35 H 1.08996 * 109.43421 * 174.68209 * 9 8 7 36 36 H 1.09004 * 109.49544 * 301.24311 * 11 10 9 37 37 H 1.09003 * 109.50837 * 181.18260 * 11 10 9 38 38 H 1.08996 * 109.58573 * 353.43657 * 12 7 5 39 39 H 1.09000 * 109.58880 * 113.72407 * 12 7 5 40 40 H 1.08994 * 109.67867 * 307.64849 * 13 10 9 41 41 H 1.09006 * 109.67570 * 68.14960 * 13 10 9 42 42 H 0.97003 * 119.99486 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.68150 * 69.12390 * 23 14 13 44 44 H 1.08993 * 109.68503 * 189.68751 * 23 14 13 45 45 H 1.09004 * 109.51275 * 172.27936 * 24 23 14 46 46 H 1.09006 * 109.51047 * 292.42162 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 -0.0006 5 6 4.8870 1.3431 -0.0014 6 8 4.8869 2.5520 0.1284 7 7 6.0520 0.6809 -0.1459 8 6 6.0638 -0.7617 -0.4241 9 6 6.9130 -1.0101 -1.6799 10 6 8.3006 -0.3968 -1.4808 11 6 8.1704 1.1137 -1.2771 12 6 7.3348 1.3866 -0.0224 13 6 9.1599 -0.6713 -2.7198 14 7 10.5386 -0.2442 -2.4329 15 6 11.2169 0.5747 -3.2957 16 1 10.6728 1.2480 -3.9416 17 6 12.6039 0.5395 -3.3402 18 7 13.2543 -0.4685 -2.7988 19 14 13.5471 1.9229 -4.1684 20 1 13.9575 2.9218 -3.1491 21 1 14.7542 1.3700 -4.8337 22 1 12.6796 2.5767 -5.1809 23 6 11.1665 -0.7229 -1.1911 24 6 10.2096 -0.4428 -0.0267 25 8 8.9221 -0.9824 -0.3351 26 8 3.4539 -0.7360 -0.0015 27 7 2.2848 -1.0433 -0.0010 28 1 -0.3634 -0.0002 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5141 31 1 2.0678 2.1747 0.0004 32 1 6.4958 -1.2938 0.4235 33 1 5.0450 -1.1093 -0.5955 34 1 6.4326 -0.5502 -2.5436 35 1 7.0100 -2.0830 -1.8458 36 1 7.6802 1.5568 -2.1441 37 1 9.1613 1.5515 -1.1564 38 1 7.1551 2.4576 0.0711 39 1 7.8664 1.0269 0.8585 40 1 9.1457 -1.7371 -2.9475 41 1 8.7701 -0.1094 -3.5686 42 1 14.2235 -0.4932 -2.8302 43 1 11.3530 -1.7944 -1.2634 44 1 12.1067 -0.1962 -1.0285 45 1 10.5928 -0.9108 0.8801 46 1 10.1264 0.6334 0.1254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949295586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:36 Heat of formation + Delta-G solvation = 25.159108 kcal Electronic energy + Delta-G solvation = -30296.196437 eV Core-core repulsion = 26190.833683 eV Total energy + Delta-G solvation = -4105.362753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.29162 -40.45614 -38.99448 -36.41067 -35.16088 -34.39769 -32.84319 -32.27547 -31.16072 -30.79110 -29.06179 -28.53277 -26.66821 -24.79920 -23.68404 -23.24558 -23.03926 -22.36370 -20.88825 -19.92854 -18.73992 -18.08535 -17.78903 -16.88632 -16.64333 -16.23174 -15.52886 -15.14933 -14.96480 -14.61689 -14.51407 -14.19986 -13.95601 -13.77798 -13.74759 -13.69815 -13.48203 -13.24393 -13.06348 -12.83680 -12.42914 -12.05021 -11.94745 -11.68215 -11.57548 -11.14526 -11.07221 -10.96897 -10.75445 -10.61976 -10.42087 -10.34125 -10.24914 -10.20255 -9.98013 -9.95810 -9.46299 -9.05110 -8.70091 -8.52222 -6.73856 -5.85026 -3.29315 0.56427 1.75203 2.32914 2.77237 2.97533 3.32956 3.40561 3.41571 3.73560 4.03593 4.27185 4.42072 4.50990 4.68731 4.89956 4.97869 5.01468 5.08012 5.18765 5.23166 5.25839 5.32429 5.36759 5.39191 5.49580 5.60414 5.66675 5.70133 5.84860 5.93034 6.03454 6.07255 6.09367 6.17313 6.32913 6.37049 6.42592 6.52146 6.67048 6.76504 7.12681 7.14025 7.52845 7.68366 7.69849 7.90572 7.91837 8.32739 9.10912 9.73460 10.30386 11.22466 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026265 B = 0.002754 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.803357 B =10166.421015 C =10470.082785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.011 3.989 3 C -0.155 4.155 4 C -0.074 4.074 5 C 0.599 3.401 6 O -0.520 6.520 7 N -0.589 5.589 8 C 0.101 3.899 9 C -0.116 4.116 10 C 0.105 3.895 11 C -0.150 4.150 12 C 0.118 3.882 13 C 0.127 3.873 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.068 0.932 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.140 3.860 24 C 0.035 3.965 25 O -0.381 6.381 26 O 0.117 5.883 27 N -0.351 5.351 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.183 0.817 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.026 0.974 41 H 0.059 0.941 42 H 0.254 0.746 43 H 0.026 0.974 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.640 0.524 7.030 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C -0.178 4.178 4 C -0.139 4.139 5 C 0.384 3.616 6 O -0.397 6.397 7 N -0.320 5.320 8 C -0.021 4.021 9 C -0.155 4.155 10 C 0.063 3.937 11 C -0.188 4.188 12 C -0.004 4.004 13 C 0.000 4.000 14 N -0.316 5.316 15 C -0.381 4.381 16 H 0.086 0.914 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.015 3.985 24 C -0.043 4.043 25 O -0.300 6.300 26 O 0.047 5.953 27 N -0.055 5.055 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.200 0.800 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.729 -0.302 7.180 21.940 hybrid contribution 0.797 1.530 -0.635 1.838 sum -19.933 1.228 6.545 21.016 Atomic orbital electron populations 1.20207 0.85316 1.04128 1.03668 1.23638 0.99334 0.88315 1.03412 1.22860 0.89954 1.01716 1.03229 1.24297 0.97379 0.83887 1.08362 1.16672 0.80983 0.85933 0.77975 1.90854 1.85593 1.12139 1.51127 1.48096 1.05604 1.10332 1.67990 1.22231 1.01378 0.79254 0.99234 1.21943 0.93904 1.02427 0.97207 1.21818 0.91805 0.91213 0.88816 1.22372 1.01500 0.97616 0.97303 1.21742 0.81687 0.97745 0.99188 1.21508 0.86838 0.97622 0.94057 1.44049 1.10175 1.56665 1.20665 1.19197 0.88852 1.12941 1.17114 0.91438 1.25045 0.97260 0.97381 0.99976 1.70017 1.07210 1.28812 1.48768 0.86243 0.79581 0.81712 0.79064 1.21423 1.21733 1.20384 1.21438 0.95519 0.98131 0.83442 1.23347 0.84173 0.97540 0.99203 1.87776 1.32646 1.63190 1.46435 1.85129 1.20846 1.22215 1.67119 1.73725 0.89806 1.24649 1.17284 0.89910 0.89712 0.90240 0.80014 0.89554 0.88830 0.90431 0.89612 0.91127 0.88450 0.89088 0.90508 0.95590 0.92257 0.93546 0.95590 0.88742 0.90281 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.47 36.00 0.38 -0.06 16 2 C 0.01 0.11 7.31 -82.17 -0.60 -0.50 16 3 C -0.16 -1.56 10.92 -38.94 -0.43 -1.99 16 4 C -0.07 -0.88 6.92 -36.31 -0.25 -1.13 16 5 C 0.60 8.21 7.69 -12.48 -0.10 8.11 16 6 O -0.52 -8.36 16.34 5.29 0.09 -8.27 16 7 N -0.59 -7.82 2.97 -173.73 -0.52 -8.33 16 8 C 0.10 1.23 5.97 -3.48 -0.02 1.21 16 9 C -0.12 -1.54 5.12 -26.40 -0.14 -1.67 16 10 C 0.10 1.72 0.68 -90.49 -0.06 1.66 16 11 C -0.15 -2.36 4.33 -26.64 -0.12 -2.47 16 12 C 0.12 1.65 6.20 -3.71 -0.02 1.63 16 13 C 0.13 2.53 5.39 -3.55 -0.02 2.51 16 14 N -0.59 -14.11 2.55 -171.85 -0.44 -14.55 16 15 C -0.25 -6.61 9.66 -15.06 -0.15 -6.76 16 16 H 0.07 1.75 7.88 -52.48 -0.41 1.34 16 17 C 0.00 0.05 4.98 -17.43 -0.09 -0.03 16 18 N -0.90 -25.49 11.07 55.49 0.61 -24.88 16 19 Si 0.90 21.18 29.58 -169.99 -5.03 16.15 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.14 3.22 5.44 -3.53 -0.02 3.20 16 24 C 0.04 0.64 6.60 37.31 0.25 0.89 16 25 O -0.38 -6.69 9.00 -35.23 -0.32 -7.01 16 26 O 0.12 1.37 7.89 15.54 0.12 1.49 16 27 N -0.35 -4.08 12.04 33.52 0.40 -3.68 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.18 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.09 1.06 7.82 -51.93 -0.41 0.66 16 33 H 0.09 1.04 4.18 -52.96 -0.22 0.82 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 1.75 6.16 -51.93 -0.32 1.43 16 38 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16 39 H 0.08 1.07 7.83 -51.93 -0.41 0.66 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.16 7.95 -51.93 -0.41 0.74 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.09 2.40 6.10 -51.93 -0.32 2.08 16 45 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.04 0.79 6.29 -51.93 -0.33 0.46 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -30.55 361.29 -7.55 -38.10 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.55 Total: 0.93 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.38 Total: 4.59 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.06 Total: -51.43 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.11 Total: -13.79 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.55 -7.55 -38.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949295586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.260 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds