Wall clock time and date at job start Tue Mar 31 2020 19:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41265 * 126.70233 * 2 1 4 4 C 1.36830 * 103.84439 * 180.02562 * 3 2 1 5 5 C 1.47508 * 126.94292 * 179.97438 * 4 3 2 6 6 O 1.21586 * 120.00069 * 7.09108 * 5 4 3 7 7 N 1.34776 * 120.00061 * 187.08777 * 5 4 3 8 8 C 1.46929 * 120.63908 * 5.52163 * 7 5 4 9 9 C 1.53624 * 108.54057 * 126.29529 * 8 7 5 10 10 C 1.53008 * 109.27378 * 54.80101 * 9 8 7 11 11 C 1.52980 * 109.63030 * 298.66167 * 10 9 8 12 12 C 1.46931 * 120.64457 * 185.79716 * 7 5 4 13 13 C 1.53259 * 109.35894 * 178.71832 * 10 9 8 14 14 N 1.47154 * 108.40766 * 187.91351 * 13 10 9 15 15 C 1.36934 * 120.98806 * 230.49939 * 14 13 10 16 16 H 1.08003 * 120.00367 * 26.38337 * 15 14 13 17 17 C 1.38818 * 119.99700 * 206.38565 * 15 14 13 18 18 N 1.31614 * 119.99951 * 15.59858 * 17 15 14 19 19 Si 1.86797 * 119.99462 * 195.59668 * 17 15 14 20 20 H 1.48505 * 109.46966 * 94.95047 * 19 17 15 21 21 H 1.48505 * 109.47125 * 214.94526 * 19 17 15 22 22 H 1.48496 * 109.47724 * 334.94864 * 19 17 15 23 23 C 1.47154 * 118.02496 * 50.47510 * 14 13 10 24 24 C 1.53296 * 108.37273 * 309.40941 * 23 14 13 25 25 O 1.42891 * 109.54555 * 58.92129 * 10 9 8 26 26 O 1.34645 * 106.11133 * 0.02562 * 4 3 2 27 27 N 1.20884 * 111.46881 * 359.97438 * 26 4 3 28 28 H 1.08997 * 109.47363 * 269.98862 * 1 2 3 29 29 H 1.09002 * 109.46988 * 29.98477 * 1 2 3 30 30 H 1.09004 * 109.46994 * 149.98552 * 1 2 3 31 31 H 1.08000 * 128.08026 * 0.02846 * 3 2 1 32 32 H 1.09003 * 109.58705 * 246.11818 * 8 7 5 33 33 H 1.08999 * 109.59311 * 6.55102 * 8 7 5 34 34 H 1.09001 * 109.62674 * 294.80363 * 9 8 7 35 35 H 1.08996 * 109.43421 * 174.68209 * 9 8 7 36 36 H 1.09004 * 109.49544 * 301.24311 * 11 10 9 37 37 H 1.09003 * 109.50837 * 181.18260 * 11 10 9 38 38 H 1.08996 * 109.58573 * 353.43657 * 12 7 5 39 39 H 1.09000 * 109.58880 * 113.72407 * 12 7 5 40 40 H 1.08994 * 109.67867 * 307.64849 * 13 10 9 41 41 H 1.09006 * 109.67570 * 68.14960 * 13 10 9 42 42 H 0.97003 * 119.99486 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.68150 * 69.12390 * 23 14 13 44 44 H 1.08993 * 109.68503 * 189.68751 * 23 14 13 45 45 H 1.09004 * 109.51275 * 172.27936 * 24 23 14 46 46 H 1.09006 * 109.51047 * 292.42162 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 -0.0006 5 6 4.8870 1.3431 -0.0014 6 8 4.8869 2.5520 0.1284 7 7 6.0520 0.6809 -0.1459 8 6 6.0638 -0.7617 -0.4241 9 6 6.9130 -1.0101 -1.6799 10 6 8.3006 -0.3968 -1.4808 11 6 8.1704 1.1137 -1.2771 12 6 7.3348 1.3866 -0.0224 13 6 9.1599 -0.6713 -2.7198 14 7 10.5386 -0.2442 -2.4329 15 6 11.2169 0.5747 -3.2957 16 1 10.6728 1.2480 -3.9416 17 6 12.6039 0.5395 -3.3402 18 7 13.2543 -0.4685 -2.7988 19 14 13.5471 1.9229 -4.1684 20 1 13.9575 2.9218 -3.1491 21 1 14.7542 1.3700 -4.8337 22 1 12.6796 2.5767 -5.1809 23 6 11.1665 -0.7229 -1.1911 24 6 10.2096 -0.4428 -0.0267 25 8 8.9221 -0.9824 -0.3351 26 8 3.4539 -0.7360 -0.0015 27 7 2.2848 -1.0433 -0.0010 28 1 -0.3634 -0.0002 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5141 31 1 2.0678 2.1747 0.0004 32 1 6.4958 -1.2938 0.4235 33 1 5.0450 -1.1093 -0.5955 34 1 6.4326 -0.5502 -2.5436 35 1 7.0100 -2.0830 -1.8458 36 1 7.6802 1.5568 -2.1441 37 1 9.1613 1.5515 -1.1564 38 1 7.1551 2.4576 0.0711 39 1 7.8664 1.0269 0.8585 40 1 9.1457 -1.7371 -2.9475 41 1 8.7701 -0.1094 -3.5686 42 1 14.2235 -0.4932 -2.8302 43 1 11.3530 -1.7944 -1.2634 44 1 12.1067 -0.1962 -1.0285 45 1 10.5928 -0.9108 0.8801 46 1 10.1264 0.6334 0.1254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949295586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:35 Heat of formation + Delta-G solvation = 6.513411 kcal Electronic energy + Delta-G solvation = -30297.004975 eV Core-core repulsion = 26190.833683 eV Total energy + Delta-G solvation = -4106.171291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.09473 -41.66869 -40.30815 -37.67849 -36.20646 -35.86283 -34.08407 -33.36777 -32.93540 -31.95942 -30.04148 -29.62803 -28.32399 -26.07320 -24.93896 -24.78064 -24.01728 -23.53991 -22.24214 -21.01644 -20.09613 -18.93878 -18.89408 -18.67107 -17.67422 -17.20827 -16.98957 -16.75756 -16.32852 -15.98062 -15.83697 -15.54366 -15.29995 -15.07735 -14.79874 -14.60499 -14.57407 -14.29639 -14.17846 -13.76664 -13.61032 -13.40897 -13.17782 -13.04520 -12.92470 -12.75682 -12.45628 -12.37756 -12.25537 -12.21507 -12.03995 -11.76418 -11.72412 -11.45347 -11.13063 -10.94317 -10.83863 -10.71736 -10.44213 -9.82452 -8.68123 -7.88188 -5.35372 -0.32423 1.00857 1.38349 1.45784 1.47456 1.55980 1.77509 2.01580 2.47727 2.88488 3.06684 3.18174 3.26120 3.52913 3.67788 3.82853 3.85113 3.92047 3.97579 4.07628 4.30232 4.30866 4.41466 4.46775 4.52025 4.57877 4.71500 4.72099 4.75094 4.76526 4.80137 4.81400 4.89182 4.92631 4.96296 5.03803 5.10482 5.20690 5.21904 5.34792 5.45672 5.58494 5.65649 6.08987 6.31437 6.43672 6.67866 7.05051 7.09522 7.78338 8.31684 9.16740 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026265 B = 0.002754 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.803357 B =10166.421015 C =10470.082785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.017 3.983 3 C -0.145 4.145 4 C -0.091 4.091 5 C 0.603 3.397 6 O -0.548 6.548 7 N -0.589 5.589 8 C 0.109 3.891 9 C -0.112 4.112 10 C 0.110 3.890 11 C -0.141 4.141 12 C 0.126 3.874 13 C 0.123 3.877 14 N -0.608 5.608 15 C -0.256 4.256 16 H 0.069 0.931 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.285 1.285 21 H -0.297 1.297 22 H -0.269 1.269 23 C 0.146 3.854 24 C 0.050 3.950 25 O -0.378 6.378 26 O 0.107 5.893 27 N -0.370 5.370 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.201 0.799 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.016 0.984 41 H 0.061 0.939 42 H 0.250 0.750 43 H -0.003 1.003 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.386 1.131 7.498 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.141 4.141 3 C -0.167 4.167 4 C -0.157 4.157 5 C 0.389 3.611 6 O -0.427 6.427 7 N -0.320 5.320 8 C -0.013 4.013 9 C -0.150 4.150 10 C 0.069 3.931 11 C -0.179 4.179 12 C 0.005 3.995 13 C -0.003 4.003 14 N -0.332 5.332 15 C -0.386 4.386 16 H 0.086 0.914 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.795 3.205 20 H -0.212 1.212 21 H -0.224 1.224 22 H -0.194 1.194 23 C 0.020 3.980 24 C -0.028 4.028 25 O -0.297 6.297 26 O 0.040 5.960 27 N -0.076 5.076 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.218 0.782 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.034 0.966 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.015 0.985 44 H 0.084 0.916 45 H 0.121 0.879 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.500 0.293 7.649 24.716 hybrid contribution 1.548 1.306 -0.819 2.185 sum -21.952 1.599 6.830 23.046 Atomic orbital electron populations 1.20419 0.82615 1.05408 1.04976 1.24235 1.00910 0.87422 1.01530 1.23212 0.89308 1.02779 1.01405 1.24064 0.97092 0.84307 1.10194 1.16804 0.81448 0.85656 0.77154 1.90836 1.86114 1.13330 1.52415 1.48109 1.05305 1.10709 1.67887 1.22237 1.01992 0.78550 0.98544 1.21945 0.91845 1.02887 0.98331 1.21809 0.92584 0.92059 0.86621 1.22231 1.00621 0.96759 0.98305 1.21576 0.81899 0.97875 0.98194 1.21677 0.85547 0.96877 0.96177 1.44271 1.11440 1.56609 1.20852 1.19486 0.89269 1.12952 1.16891 0.91368 1.25758 0.98150 0.99412 1.01234 1.70171 1.06970 1.30553 1.50522 0.85264 0.77991 0.79068 0.78203 1.21187 1.22368 1.19394 1.21275 0.95805 0.95751 0.85128 1.23145 0.83434 0.98352 0.97877 1.87793 1.31931 1.63374 1.46605 1.85081 1.21155 1.21966 1.67816 1.73725 0.89965 1.25563 1.18391 0.88461 0.87558 0.89865 0.78193 0.89347 0.87347 0.89359 0.88662 0.91124 0.90735 0.89227 0.90116 0.96571 0.92047 0.94076 0.98502 0.91611 0.87860 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.47 71.24 0.75 0.12 16 2 C 0.02 0.28 7.31 43.55 0.32 0.60 16 3 C -0.15 -2.55 10.92 22.68 0.25 -2.30 16 4 C -0.09 -1.99 6.92 24.39 0.17 -1.83 16 5 C 0.60 15.58 7.69 86.69 0.67 16.24 16 6 O -0.55 -16.93 16.34 -3.99 -0.07 -16.99 16 7 N -0.59 -14.66 2.97 -821.84 -2.44 -17.10 16 8 C 0.11 2.41 5.97 86.51 0.52 2.92 16 9 C -0.11 -2.75 5.12 30.81 0.16 -2.59 16 10 C 0.11 3.51 0.68 -10.71 -0.01 3.50 16 11 C -0.14 -4.32 4.33 30.65 0.13 -4.19 16 12 C 0.13 3.38 6.20 86.36 0.54 3.92 16 13 C 0.12 4.92 5.39 86.34 0.47 5.39 16 14 N -0.61 -29.52 2.55 -697.60 -1.78 -31.30 16 15 C -0.26 -13.65 9.66 84.04 0.81 -12.84 16 16 H 0.07 3.56 7.88 -2.91 -0.02 3.53 16 17 C -0.05 -2.75 4.98 84.86 0.42 -2.33 16 18 N -0.94 -54.44 11.07 21.65 0.24 -54.20 16 19 Si 0.97 44.21 29.58 68.60 2.03 46.24 16 20 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 C 0.15 6.88 5.44 86.35 0.47 7.35 16 24 C 0.05 1.79 6.60 72.08 0.48 2.26 16 25 O -0.38 -12.82 9.00 -148.98 -1.34 -14.16 16 26 O 0.11 2.32 7.89 65.79 0.52 2.84 16 27 N -0.37 -7.84 12.04 -48.86 -0.59 -8.43 16 28 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.20 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.09 1.97 7.82 -2.39 -0.02 1.95 16 33 H 0.11 2.16 4.18 -18.77 -0.08 2.09 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.66 6.16 -2.39 -0.01 2.65 16 38 H 0.09 2.46 7.00 -2.39 -0.02 2.45 16 39 H 0.08 2.12 7.83 -2.39 -0.02 2.10 16 40 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 2.39 7.95 -2.38 -0.02 2.37 16 42 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 43 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.07 3.47 6.10 -2.39 -0.01 3.46 16 45 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 46 H 0.05 1.80 6.29 -2.38 -0.01 1.79 16 Total: -1.00 -66.81 361.29 3.64 -63.18 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.93 Total: 13.69 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.13 Total: 16.24 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -4.57 Total: -111.03 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.89 Total: -28.31 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.81 3.64 -63.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949295586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.691 kcal (2) G-P(sol) polarization free energy of solvation -66.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds