Wall clock time and date at job start Tue Mar 31 2020 19:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30017 * 127.33102 * 2 1 4 4 O 1.20661 * 112.29687 * 179.97438 * 3 2 1 5 5 C 1.33495 * 113.15765 * 359.97438 * 4 3 2 6 6 C 1.37357 * 106.34166 * 0.02562 * 5 4 3 7 7 C 1.47403 * 128.56554 * 179.97438 * 6 5 4 8 8 O 1.21606 * 119.99927 * 138.63787 * 7 6 5 9 9 N 1.34784 * 119.99685 * 318.63750 * 7 6 5 10 10 C 1.46930 * 120.63782 * 185.86839 * 9 7 6 11 11 C 1.53630 * 108.53263 * 126.30103 * 10 9 7 12 12 C 1.52989 * 109.27894 * 54.80400 * 11 10 9 13 13 C 1.52988 * 109.63427 * 298.66223 * 12 11 10 14 14 C 1.46926 * 120.64342 * 6.15390 * 9 7 6 15 15 C 1.53257 * 109.36564 * 178.71730 * 12 11 10 16 16 N 1.47149 * 108.41081 * 187.91540 * 15 12 11 17 17 C 1.36931 * 120.98755 * 230.49340 * 16 15 12 18 18 H 1.07999 * 120.00260 * 148.56845 * 17 16 15 19 19 C 1.38811 * 120.00243 * 328.56907 * 17 16 15 20 20 N 1.31627 * 119.99790 * 342.28412 * 19 17 16 21 21 Si 1.86799 * 120.00247 * 162.28017 * 19 17 16 22 22 H 1.48500 * 109.47332 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47069 * 120.00249 * 21 19 17 24 24 H 1.48504 * 109.47120 * 240.00021 * 21 19 17 25 25 C 1.47153 * 118.02821 * 50.47258 * 16 15 12 26 26 C 1.53304 * 108.37289 * 309.40843 * 25 16 15 27 27 O 1.42894 * 109.54774 * 58.91300 * 12 11 10 28 28 H 1.09000 * 109.47129 * 270.00384 * 1 2 3 29 29 H 1.09001 * 109.47206 * 30.00056 * 1 2 3 30 30 H 1.08995 * 109.46985 * 150.00582 * 1 2 3 31 31 H 1.07998 * 126.83104 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.58494 * 246.12555 * 10 9 7 33 33 H 1.09002 * 109.58923 * 6.56288 * 10 9 7 34 34 H 1.09009 * 109.62600 * 294.80399 * 11 10 9 35 35 H 1.08999 * 109.42286 * 174.68892 * 11 10 9 36 36 H 1.08997 * 109.48883 * 301.24175 * 13 12 11 37 37 H 1.08996 * 109.51159 * 181.18297 * 13 12 11 38 38 H 1.09008 * 109.58810 * 353.43280 * 14 9 7 39 39 H 1.08995 * 109.59082 * 113.71729 * 14 9 7 40 40 H 1.08998 * 109.67248 * 307.64879 * 15 12 11 41 41 H 1.08996 * 109.67673 * 68.18497 * 15 12 11 42 42 H 0.96994 * 119.99825 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.68348 * 69.12083 * 25 16 15 44 44 H 1.08992 * 109.68701 * 189.68398 * 25 16 15 45 45 H 1.08997 * 109.51185 * 172.27537 * 26 25 16 46 46 H 1.08997 * 109.51117 * 292.42580 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6007 0.0015 6 6 2.3992 -1.1696 0.0010 7 6 2.0401 -2.5992 0.0011 8 8 1.1250 -2.9962 0.6967 9 7 2.7260 -3.4664 -0.7697 10 6 2.3010 -4.8686 -0.8796 11 6 2.1386 -5.2143 -2.3677 12 6 3.4392 -4.8919 -3.1061 13 6 3.7401 -3.3965 -2.9881 14 6 3.9167 -3.0293 -1.5113 15 6 3.2902 -5.2660 -4.5848 16 7 4.6038 -5.1285 -5.2335 17 6 4.7459 -4.4149 -6.3935 18 1 5.6690 -3.8921 -6.5963 19 6 3.7037 -4.3634 -7.3089 20 7 2.7337 -5.2514 -7.2525 21 14 3.6777 -3.0339 -8.6209 22 1 4.8736 -2.1666 -8.4705 23 1 3.6901 -3.6647 -9.9652 24 1 2.4488 -2.2139 -8.4702 25 6 5.7602 -5.7803 -4.5985 26 6 5.7897 -5.3780 -3.1195 27 8 4.5123 -5.6423 -2.5342 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 4.5966 -1.1195 0.0017 32 1 3.0555 -5.5152 -0.4317 33 1 1.3493 -5.0034 -0.3657 34 1 1.3239 -4.6281 -2.7930 35 1 1.9154 -6.2762 -2.4708 36 1 2.9128 -2.8248 -3.4086 37 1 4.6557 -3.1654 -3.5324 38 1 4.0316 -1.9496 -1.4145 39 1 4.7996 -3.5280 -1.1117 40 1 2.9449 -6.2963 -4.6696 41 1 2.5735 -4.5977 -5.0620 42 1 2.0053 -5.2152 -7.8919 43 1 5.6635 -6.8627 -4.6827 44 1 6.6789 -5.4543 -5.0861 45 1 6.5545 -5.9555 -2.6003 46 1 6.0155 -4.3150 -3.0358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949454873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:39 Heat of formation + Delta-G solvation = 19.824218 kcal Electronic energy + Delta-G solvation = -30827.438230 eV Core-core repulsion = 26721.844138 eV Total energy + Delta-G solvation = -4105.594091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.09586 -40.40864 -38.92853 -36.20154 -34.70176 -34.43502 -33.12479 -31.91501 -31.33480 -30.77319 -28.99478 -28.37627 -26.73782 -25.00831 -23.74311 -23.13012 -22.92569 -21.42255 -21.05833 -19.83747 -18.84077 -17.94833 -17.67986 -16.93998 -16.91795 -16.15885 -15.58529 -15.34068 -14.83001 -14.67542 -14.44280 -14.32290 -13.82987 -13.66156 -13.57477 -13.50727 -13.38683 -13.04771 -12.87492 -12.76618 -12.48793 -12.21489 -11.89049 -11.69107 -11.46205 -11.11487 -11.02216 -10.95654 -10.74549 -10.68896 -10.39284 -10.31239 -10.19768 -10.07011 -10.00328 -9.77459 -9.46136 -9.09884 -8.60799 -8.54828 -6.73014 -5.91329 -3.38406 0.96043 1.64327 2.53256 2.85152 3.11294 3.28032 3.37159 3.38261 3.85721 4.10347 4.23810 4.38812 4.48525 4.73250 4.83874 5.03723 5.11013 5.18998 5.21901 5.33412 5.34805 5.38158 5.42456 5.45845 5.49604 5.54447 5.69722 5.79501 5.82391 5.89192 5.90767 5.99718 6.09415 6.19749 6.30055 6.40037 6.45863 6.60620 6.67299 6.76694 6.97400 7.31596 7.36410 7.68219 7.85563 7.98668 8.04112 8.30138 9.05232 9.67766 10.28267 11.16256 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.003949 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.187213 B = 7088.570221 C = 7992.947223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.065 3.935 3 N -0.358 5.358 4 O 0.097 5.903 5 C -0.015 4.015 6 C -0.243 4.243 7 C 0.594 3.406 8 O -0.534 6.534 9 N -0.595 5.595 10 C 0.121 3.879 11 C -0.116 4.116 12 C 0.096 3.904 13 C -0.147 4.147 14 C 0.097 3.903 15 C 0.162 3.838 16 N -0.591 5.591 17 C -0.260 4.260 18 H 0.066 0.934 19 C 0.011 3.989 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.288 1.288 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.381 6.381 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.229 0.771 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.029 0.971 41 H 0.081 0.919 42 H 0.255 0.745 43 H 0.025 0.975 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.576 5.768 14.331 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 N -0.066 5.066 4 O 0.037 5.963 5 C -0.097 4.097 6 C -0.250 4.250 7 C 0.381 3.619 8 O -0.412 6.412 9 N -0.327 5.327 10 C -0.001 4.001 11 C -0.155 4.155 12 C 0.056 3.944 13 C -0.185 4.185 14 C -0.025 4.025 15 C 0.035 3.965 16 N -0.314 5.314 17 C -0.390 4.390 18 H 0.083 0.917 19 C -0.189 4.189 20 N -0.539 5.539 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.216 1.216 24 H -0.215 1.215 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.300 6.300 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.245 0.755 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.749 6.712 14.702 16.179 hybrid contribution 0.128 -0.141 -1.220 1.234 sum 0.877 6.572 13.483 15.025 Atomic orbital electron populations 1.20203 0.84986 1.04043 1.03952 1.24811 0.98854 0.86246 0.99858 1.73653 0.89281 1.23539 1.20080 1.84569 1.21495 1.23048 1.67205 1.26536 1.00266 0.83816 0.99064 1.22334 0.93081 0.95741 1.13882 1.16891 0.82006 0.83153 0.79842 1.90786 1.30613 1.78517 1.41294 1.47985 1.28558 1.10536 1.45634 1.21707 1.01384 0.79795 0.97167 1.21937 0.96593 1.02861 0.94073 1.22124 0.86472 0.89434 0.96409 1.22321 1.04429 0.97684 0.94067 1.22136 0.87278 0.99902 0.93231 1.21252 0.88878 0.99669 0.86656 1.43995 1.02676 1.59438 1.25325 1.19128 1.01594 1.23106 0.95142 0.91667 1.25136 0.98993 0.97759 0.97058 1.70051 1.12999 1.33229 1.37653 0.86304 0.77679 0.81708 0.81566 1.20105 1.21553 1.21456 1.21604 0.92464 0.95969 0.91672 1.23028 0.84996 0.99531 0.95683 1.87789 1.15952 1.65816 1.60456 0.89519 0.90198 0.89542 0.75508 0.90429 0.89270 0.90376 0.89853 0.91028 0.88910 0.90128 0.90527 0.95270 0.90075 0.93530 0.95752 0.92121 0.90244 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.49 36.01 0.38 -0.40 16 2 C 0.06 0.82 7.59 -79.77 -0.61 0.21 16 3 N -0.36 -4.61 12.01 34.78 0.42 -4.19 16 4 O 0.10 1.08 11.06 18.65 0.21 1.29 16 5 C -0.02 -0.14 10.01 30.41 0.30 0.16 16 6 C -0.24 -3.02 5.78 -102.89 -0.59 -3.61 16 7 C 0.59 8.41 7.66 -12.53 -0.10 8.32 16 8 O -0.53 -8.97 16.55 5.27 0.09 -8.89 16 9 N -0.59 -7.90 2.97 -173.77 -0.52 -8.41 16 10 C 0.12 1.64 6.21 -3.48 -0.02 1.62 16 11 C -0.12 -1.75 5.12 -26.41 -0.14 -1.88 16 12 C 0.10 1.65 0.68 -90.50 -0.06 1.58 16 13 C -0.15 -2.27 4.33 -26.64 -0.12 -2.38 16 14 C 0.10 1.17 5.64 -3.71 -0.02 1.15 16 15 C 0.16 3.56 4.07 -3.55 -0.01 3.54 16 16 N -0.59 -13.72 2.52 -171.86 -0.43 -14.16 16 17 C -0.26 -6.70 9.58 -15.06 -0.14 -6.84 16 18 H 0.07 1.66 7.89 -52.49 -0.41 1.24 16 19 C 0.01 0.28 4.88 -17.43 -0.09 0.19 16 20 N -0.90 -25.04 11.60 55.49 0.64 -24.40 16 21 Si 0.90 20.79 29.59 -169.99 -5.03 15.76 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.11 2.13 6.73 -3.53 -0.02 2.11 16 26 C 0.05 0.72 6.60 37.31 0.25 0.97 16 27 O -0.38 -6.41 9.00 -35.23 -0.32 -6.72 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.23 1.27 6.93 -52.49 -0.36 0.91 16 32 H 0.08 1.03 7.82 -51.93 -0.41 0.63 16 33 H 0.09 1.22 7.04 -51.93 -0.37 0.85 16 34 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.56 6.16 -51.93 -0.32 1.24 16 38 H 0.08 0.81 3.89 -51.92 -0.20 0.61 16 39 H 0.08 0.86 7.83 -51.93 -0.41 0.45 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 2.00 6.57 -51.93 -0.34 1.66 16 42 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 0.68 6.29 -51.93 -0.33 0.35 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -31.33 361.96 -6.97 -38.30 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.50 Total: 1.24 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -0.99 Total: 4.72 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.11 Total: -51.16 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.02 Total: -14.32 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.33 -6.97 -38.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949454873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.128 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds