Wall clock time and date at job start Tue Mar 31 2020 19:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30017 * 127.33102 * 2 1 4 4 O 1.20661 * 112.29687 * 179.97438 * 3 2 1 5 5 C 1.33495 * 113.15765 * 359.97438 * 4 3 2 6 6 C 1.37357 * 106.34166 * 0.02562 * 5 4 3 7 7 C 1.47403 * 128.56554 * 179.97438 * 6 5 4 8 8 O 1.21606 * 119.99927 * 138.63787 * 7 6 5 9 9 N 1.34784 * 119.99685 * 318.63750 * 7 6 5 10 10 C 1.46930 * 120.63782 * 185.86839 * 9 7 6 11 11 C 1.53630 * 108.53263 * 126.30103 * 10 9 7 12 12 C 1.52989 * 109.27894 * 54.80400 * 11 10 9 13 13 C 1.52988 * 109.63427 * 298.66223 * 12 11 10 14 14 C 1.46926 * 120.64342 * 6.15390 * 9 7 6 15 15 C 1.53257 * 109.36564 * 178.71730 * 12 11 10 16 16 N 1.47149 * 108.41081 * 187.91540 * 15 12 11 17 17 C 1.36931 * 120.98755 * 230.49340 * 16 15 12 18 18 H 1.07999 * 120.00260 * 148.56845 * 17 16 15 19 19 C 1.38811 * 120.00243 * 328.56907 * 17 16 15 20 20 N 1.31627 * 119.99790 * 342.28412 * 19 17 16 21 21 Si 1.86799 * 120.00247 * 162.28017 * 19 17 16 22 22 H 1.48500 * 109.47332 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47069 * 120.00249 * 21 19 17 24 24 H 1.48504 * 109.47120 * 240.00021 * 21 19 17 25 25 C 1.47153 * 118.02821 * 50.47258 * 16 15 12 26 26 C 1.53304 * 108.37289 * 309.40843 * 25 16 15 27 27 O 1.42894 * 109.54774 * 58.91300 * 12 11 10 28 28 H 1.09000 * 109.47129 * 270.00384 * 1 2 3 29 29 H 1.09001 * 109.47206 * 30.00056 * 1 2 3 30 30 H 1.08995 * 109.46985 * 150.00582 * 1 2 3 31 31 H 1.07998 * 126.83104 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.58494 * 246.12555 * 10 9 7 33 33 H 1.09002 * 109.58923 * 6.56288 * 10 9 7 34 34 H 1.09009 * 109.62600 * 294.80399 * 11 10 9 35 35 H 1.08999 * 109.42286 * 174.68892 * 11 10 9 36 36 H 1.08997 * 109.48883 * 301.24175 * 13 12 11 37 37 H 1.08996 * 109.51159 * 181.18297 * 13 12 11 38 38 H 1.09008 * 109.58810 * 353.43280 * 14 9 7 39 39 H 1.08995 * 109.59082 * 113.71729 * 14 9 7 40 40 H 1.08998 * 109.67248 * 307.64879 * 15 12 11 41 41 H 1.08996 * 109.67673 * 68.18497 * 15 12 11 42 42 H 0.96994 * 119.99825 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.68348 * 69.12083 * 25 16 15 44 44 H 1.08992 * 109.68701 * 189.68398 * 25 16 15 45 45 H 1.08997 * 109.51185 * 172.27537 * 26 25 16 46 46 H 1.08997 * 109.51117 * 292.42580 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6007 0.0015 6 6 2.3992 -1.1696 0.0010 7 6 2.0401 -2.5992 0.0011 8 8 1.1250 -2.9962 0.6967 9 7 2.7260 -3.4664 -0.7697 10 6 2.3010 -4.8686 -0.8796 11 6 2.1386 -5.2143 -2.3677 12 6 3.4392 -4.8919 -3.1061 13 6 3.7401 -3.3965 -2.9881 14 6 3.9167 -3.0293 -1.5113 15 6 3.2902 -5.2660 -4.5848 16 7 4.6038 -5.1285 -5.2335 17 6 4.7459 -4.4149 -6.3935 18 1 5.6690 -3.8921 -6.5963 19 6 3.7037 -4.3634 -7.3089 20 7 2.7337 -5.2514 -7.2525 21 14 3.6777 -3.0339 -8.6209 22 1 4.8736 -2.1666 -8.4705 23 1 3.6901 -3.6647 -9.9652 24 1 2.4488 -2.2139 -8.4702 25 6 5.7602 -5.7803 -4.5985 26 6 5.7897 -5.3780 -3.1195 27 8 4.5123 -5.6423 -2.5342 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 4.5966 -1.1195 0.0017 32 1 3.0555 -5.5152 -0.4317 33 1 1.3493 -5.0034 -0.3657 34 1 1.3239 -4.6281 -2.7930 35 1 1.9154 -6.2762 -2.4708 36 1 2.9128 -2.8248 -3.4086 37 1 4.6557 -3.1654 -3.5324 38 1 4.0316 -1.9496 -1.4145 39 1 4.7996 -3.5280 -1.1117 40 1 2.9449 -6.2963 -4.6696 41 1 2.5735 -4.5977 -5.0620 42 1 2.0053 -5.2152 -7.8919 43 1 5.6635 -6.8627 -4.6827 44 1 6.6789 -5.4543 -5.0861 45 1 6.5545 -5.9555 -2.6003 46 1 6.0155 -4.3150 -3.0358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949454873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:38 Heat of formation + Delta-G solvation = 0.086958 kcal Electronic energy + Delta-G solvation = -30828.294102 eV Core-core repulsion = 26721.844138 eV Total energy + Delta-G solvation = -4106.449963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.98882 -41.62491 -40.21983 -37.47204 -36.13830 -35.59563 -34.25264 -33.21005 -33.01867 -31.90862 -30.02595 -29.62785 -28.37647 -26.22808 -25.18491 -24.45173 -24.21848 -22.43163 -22.27505 -21.06938 -20.14796 -18.88375 -18.78554 -18.64226 -17.93444 -17.21349 -17.16934 -16.54440 -16.25014 -16.02780 -15.84186 -15.48905 -15.37387 -15.22839 -14.74170 -14.59855 -14.46542 -14.27734 -14.07059 -13.75462 -13.67818 -13.35084 -13.24853 -13.18379 -12.81043 -12.73569 -12.42610 -12.36782 -12.29020 -12.20819 -12.07401 -11.79617 -11.66659 -11.28394 -10.99074 -10.94310 -10.71304 -10.65677 -10.40964 -9.71836 -8.63893 -7.90465 -5.40757 0.12890 0.72060 1.42512 1.46127 1.53206 1.55080 1.91631 2.23126 2.46270 2.91458 2.97003 3.23422 3.28293 3.51947 3.55934 3.75612 3.87292 3.98369 4.01910 4.07016 4.31279 4.35684 4.36456 4.45430 4.52050 4.55283 4.56037 4.56531 4.67745 4.70905 4.76803 4.84130 4.87648 4.96355 5.00014 5.06226 5.06776 5.18275 5.28307 5.33964 5.44080 5.55523 5.63831 6.26311 6.33361 6.46784 6.95384 7.08702 7.17201 7.77331 8.33963 9.14280 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.003949 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.187213 B = 7088.570221 C = 7992.947223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.051 3.949 3 N -0.377 5.377 4 O 0.100 5.900 5 C 0.017 3.983 6 C -0.274 4.274 7 C 0.598 3.402 8 O -0.567 6.567 9 N -0.594 5.594 10 C 0.130 3.870 11 C -0.113 4.113 12 C 0.109 3.891 13 C -0.140 4.140 14 C 0.106 3.894 15 C 0.171 3.829 16 N -0.607 5.607 17 C -0.260 4.260 18 H 0.071 0.929 19 C -0.043 4.043 20 N -0.934 5.934 21 Si 0.958 3.042 22 H -0.261 1.261 23 H -0.295 1.295 24 H -0.293 1.293 25 C 0.102 3.898 26 C 0.053 3.947 27 O -0.379 6.379 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.273 0.727 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.100 0.900 40 H -0.009 1.009 41 H 0.046 0.954 42 H 0.249 0.751 43 H 0.008 0.992 44 H 0.069 0.931 45 H 0.117 0.883 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.911 7.088 16.053 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.111 4.111 3 N -0.085 5.085 4 O 0.040 5.960 5 C -0.065 4.065 6 C -0.282 4.282 7 C 0.386 3.614 8 O -0.447 6.447 9 N -0.325 5.325 10 C 0.009 3.991 11 C -0.152 4.152 12 C 0.068 3.932 13 C -0.179 4.179 14 C -0.016 4.016 15 C 0.045 3.955 16 N -0.331 5.331 17 C -0.391 4.391 18 H 0.089 0.911 19 C -0.239 4.239 20 N -0.579 5.579 21 Si 0.786 3.214 22 H -0.185 1.185 23 H -0.222 1.222 24 H -0.220 1.220 25 C -0.023 4.023 26 C -0.025 4.025 27 O -0.298 6.298 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.288 0.712 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.009 0.991 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.026 0.974 44 H 0.087 0.913 45 H 0.134 0.866 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.127 8.044 16.438 18.566 hybrid contribution -0.526 -0.625 -1.801 1.978 sum 2.602 7.419 14.637 16.615 Atomic orbital electron populations 1.20247 0.84329 1.04162 1.04488 1.25150 0.99723 0.86490 0.99767 1.73659 0.89858 1.23935 1.21059 1.84551 1.20833 1.23814 1.66763 1.27253 1.00776 0.82926 0.95534 1.22244 0.94434 0.94771 1.16723 1.17053 0.81321 0.83759 0.79248 1.90767 1.31989 1.79172 1.42763 1.48011 1.28852 1.10269 1.45417 1.21589 1.01826 0.80362 0.95361 1.21884 0.95286 1.02722 0.95271 1.21832 0.87661 0.90827 0.92874 1.22193 1.03217 0.95746 0.96696 1.22201 0.87387 1.01696 0.90317 1.21039 0.87880 0.96596 0.89980 1.44255 1.03918 1.59725 1.25190 1.19476 1.01433 1.22539 0.95609 0.91134 1.25836 0.99085 0.99644 0.99317 1.70199 1.13772 1.35192 1.38725 0.85352 0.77773 0.79414 0.78819 1.18483 1.22181 1.22003 1.21827 0.91309 0.94781 0.94429 1.23095 0.85203 1.01312 0.92871 1.87804 1.16231 1.65958 1.59854 0.88767 0.89059 0.90388 0.71199 0.89278 0.89440 0.91366 0.89999 0.92856 0.89691 0.87687 0.88168 0.99077 0.93513 0.94199 0.97417 0.91262 0.86553 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 10.49 71.24 0.75 -0.78 16 2 C 0.05 1.21 7.59 45.15 0.34 1.56 16 3 N -0.38 -9.02 12.01 -44.78 -0.54 -9.56 16 4 O 0.10 1.93 11.06 76.97 0.85 2.78 16 5 C 0.02 0.25 10.01 67.61 0.68 0.93 16 6 C -0.27 -6.17 5.78 -18.75 -0.11 -6.28 16 7 C 0.60 15.82 7.66 86.66 0.66 16.49 16 8 O -0.57 -18.56 16.55 -4.05 -0.07 -18.62 16 9 N -0.59 -14.31 2.97 -821.92 -2.44 -16.75 16 10 C 0.13 3.32 6.21 86.51 0.54 3.86 16 11 C -0.11 -3.39 5.12 30.80 0.16 -3.23 16 12 C 0.11 3.65 0.68 -10.72 -0.01 3.64 16 13 C -0.14 -4.08 4.33 30.66 0.13 -3.95 16 14 C 0.11 2.14 5.64 86.36 0.49 2.63 16 15 C 0.17 7.80 4.07 86.34 0.35 8.15 16 16 N -0.61 -28.39 2.52 -697.63 -1.76 -30.15 16 17 C -0.26 -13.46 9.58 84.03 0.81 -12.66 16 18 H 0.07 3.52 7.89 -2.91 -0.02 3.49 16 19 C -0.04 -2.29 4.88 84.86 0.41 -1.88 16 20 N -0.93 -54.26 11.60 21.65 0.25 -54.01 16 21 Si 0.96 43.31 29.59 68.60 2.03 45.34 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 C 0.10 3.85 6.73 86.36 0.58 4.43 16 26 C 0.05 1.48 6.60 72.08 0.48 1.95 16 27 O -0.38 -11.82 9.00 -148.98 -1.34 -13.16 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.27 1.38 6.93 -2.91 -0.02 1.36 16 32 H 0.09 2.11 7.82 -2.39 -0.02 2.09 16 33 H 0.09 2.30 7.04 -2.39 -0.02 2.29 16 34 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 2.64 6.16 -2.39 -0.01 2.63 16 38 H 0.11 1.63 3.89 -2.38 -0.01 1.62 16 39 H 0.10 1.68 7.83 -2.39 -0.02 1.66 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.05 2.43 6.57 -2.39 -0.02 2.41 16 42 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.07 2.46 7.96 -2.39 -0.02 2.44 16 45 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.06 1.62 6.29 -2.39 -0.02 1.60 16 Total: -1.00 -70.78 361.96 4.25 -66.53 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.00 Total: 12.75 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 6.26 Total: 14.86 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -4.48 Total: -110.47 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.56 Total: -29.00 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -70.78 4.25 -66.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949454873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.612 kcal (2) G-P(sol) polarization free energy of solvation -70.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds