Wall clock time and date at job start Tue Mar 31 2020 19:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34867 * 119.09876 * 2 1 4 4 C 1.41670 * 119.34039 * 179.97438 * 3 2 1 5 5 O 1.22086 * 121.06996 * 179.97438 * 4 3 2 6 6 C 1.47101 * 117.86020 * 359.97438 * 4 3 2 7 7 C 1.47288 * 120.88144 * 180.02562 * 6 4 3 8 8 O 1.21622 * 120.00232 * 359.97438 * 7 6 4 9 9 N 1.34778 * 120.00092 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00259 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47213 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.78345 * 51.76140 * 11 10 9 13 13 C 1.54332 * 110.84959 * 288.69057 * 11 10 9 14 14 N 1.47018 * 107.26599 * 219.67279 * 13 11 10 15 15 C 1.36945 * 125.65225 * 178.85006 * 14 13 11 16 16 H 1.08003 * 119.99429 * 346.91973 * 15 14 13 17 17 C 1.38808 * 120.00190 * 166.92010 * 15 14 13 18 18 N 1.31619 * 119.99783 * 155.22920 * 17 15 14 19 19 Si 1.86796 * 120.00376 * 335.23249 * 17 15 14 20 20 H 1.48495 * 109.47378 * 89.99859 * 19 17 15 21 21 H 1.48497 * 109.47077 * 210.00105 * 19 17 15 22 22 H 1.48505 * 109.46938 * 330.00204 * 19 17 15 23 23 C 1.47428 * 108.70337 * 358.58815 * 14 13 11 24 24 C 1.54902 * 104.83382 * 24.35436 * 23 14 13 25 25 H 1.09002 * 111.00806 * 81.06352 * 24 23 14 26 26 O 1.42902 * 111.00706 * 204.88043 * 24 23 14 27 27 C 1.37989 * 118.23753 * 0.26897 * 6 4 3 28 28 N 1.34346 * 120.37032 * 359.42383 * 27 6 4 29 29 C 1.46499 * 118.80737 * 180.32950 * 28 27 6 30 30 H 1.09002 * 109.46707 * 97.03839 * 1 2 3 31 31 H 1.08998 * 109.47051 * 217.04472 * 1 2 3 32 32 H 1.09003 * 109.47192 * 337.04590 * 1 2 3 33 33 H 1.07996 * 120.33168 * 359.97104 * 3 2 1 34 34 H 0.97006 * 119.99819 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47415 * 59.99824 * 10 9 7 36 36 H 1.09002 * 109.46736 * 299.99606 * 10 9 7 37 37 H 1.08997 * 109.99006 * 100.19937 * 13 11 10 38 38 H 1.09002 * 109.77986 * 339.03107 * 13 11 10 39 39 H 0.97003 * 120.00159 * 5.08833 * 18 17 15 40 40 H 1.09000 * 110.36955 * 143.19543 * 23 14 13 41 41 H 1.09001 * 110.36565 * 265.40275 * 23 14 13 42 42 H 0.96692 * 113.99653 * 298.54858 * 26 24 23 43 43 H 1.07998 * 119.81965 * 179.70642 * 27 6 4 44 44 H 1.08998 * 109.47141 * 265.00704 * 29 28 27 45 45 H 1.09000 * 109.46965 * 25.00746 * 29 28 27 46 46 H 1.09005 * 109.46915 * 145.00826 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1844 0.0006 5 8 4.2053 2.2328 0.0001 6 6 4.2725 -0.1132 0.0017 7 6 5.7437 -0.1846 0.0029 8 8 6.4022 0.8379 0.0025 9 7 6.3602 -1.3831 0.0044 10 6 7.8234 -1.4542 0.0062 11 6 8.2629 -2.9197 0.0084 12 1 7.7707 -3.4722 -0.7920 13 6 7.9764 -3.5770 1.3750 14 7 9.1168 -4.4510 1.6865 15 6 9.2616 -5.1992 2.8243 16 1 8.6166 -5.0226 3.6724 17 6 10.2373 -6.1845 2.8876 18 7 10.7177 -6.5609 4.0537 19 14 10.8687 -6.9761 1.3179 20 1 12.0315 -6.2060 0.8081 21 1 11.2857 -8.3729 1.6010 22 1 9.7906 -6.9786 0.2965 23 6 10.0757 -4.3936 0.5682 24 6 9.8055 -3.0305 -0.1163 25 1 10.2999 -2.2197 0.4189 26 8 10.2088 -3.0566 -1.4870 27 6 3.5077 -1.2617 -0.0036 28 7 2.1665 -1.1846 0.0021 29 6 1.3881 -2.4257 0.0037 30 1 -0.3633 -0.1259 -1.0200 31 1 -0.3633 -0.8202 0.6191 32 1 -0.3634 0.9463 0.4008 33 1 1.6137 2.1083 -0.0005 34 1 5.8350 -2.1987 0.0051 35 1 8.2103 -0.9580 0.8962 36 1 8.2122 -0.9592 -0.8838 37 1 7.0614 -4.1669 1.3203 38 1 7.8787 -2.8078 2.1411 39 1 10.3389 -6.2041 4.8724 40 1 11.0985 -4.4337 0.9429 41 1 9.8954 -5.2122 -0.1286 42 1 11.1527 -3.2220 -1.6160 43 1 3.9899 -2.2280 -0.0077 44 1 1.1150 -2.6846 -1.0193 45 1 1.9858 -3.2289 0.4345 46 1 0.4842 -2.2870 0.5970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958151566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:38 Heat of formation + Delta-G solvation = -48.378183 kcal Electronic energy + Delta-G solvation = -28882.279818 eV Core-core repulsion = 24773.728249 eV Total energy + Delta-G solvation = -4108.551569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.53451 -39.51406 -38.54070 -37.80805 -35.38855 -34.70124 -33.86277 -33.01238 -32.26932 -30.34234 -28.61696 -27.83019 -27.29879 -25.70547 -24.49506 -23.16840 -21.84596 -21.22576 -20.58060 -19.89068 -18.38150 -17.90061 -17.48557 -17.17020 -16.53780 -16.46502 -16.09927 -15.60055 -15.18143 -15.02524 -14.70025 -14.49695 -13.99098 -13.96864 -13.77626 -13.66511 -13.62974 -13.48560 -13.29380 -13.04426 -12.84442 -12.50492 -12.42530 -12.36124 -12.27074 -12.17555 -11.29518 -11.16332 -10.90371 -10.67800 -10.17398 -10.05668 -9.88225 -9.83584 -9.47588 -9.33126 -9.23645 -8.94517 -8.56236 -8.21410 -7.17702 -6.39826 -3.29241 0.57492 1.00940 1.96454 2.96378 3.15939 3.34054 3.45675 3.60566 3.66849 3.74477 4.02114 4.13214 4.30307 4.35624 4.43535 4.51969 4.65520 4.73519 4.76715 4.80832 4.84999 4.96346 5.07243 5.11297 5.19952 5.27830 5.37078 5.45045 5.46339 5.62304 5.67904 5.82799 5.98923 6.10628 6.13971 6.21160 6.32995 6.41798 6.42757 6.50680 6.54277 6.66134 7.58287 7.60632 7.86209 8.01662 8.26188 8.41160 8.95207 9.50046 10.15863 11.08107 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002649 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.146221 B =10567.390274 C =11472.030331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 C -0.268 4.268 4 C 0.407 3.593 5 O -0.480 6.480 6 C -0.296 4.296 7 C 0.571 3.429 8 O -0.512 6.512 9 N -0.731 5.731 10 C 0.136 3.864 11 C -0.105 4.105 12 H 0.089 0.911 13 C 0.140 3.860 14 N -0.604 5.604 15 C -0.331 4.331 16 H 0.077 0.923 17 C -0.019 4.019 18 N -0.918 5.918 19 Si 1.065 2.935 20 H -0.294 1.294 21 H -0.298 1.298 22 H -0.287 1.287 23 C 0.077 3.923 24 C 0.097 3.903 25 H 0.072 0.928 26 O -0.565 6.565 27 C 0.174 3.826 28 N -0.471 5.471 29 C 0.047 3.953 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.392 0.608 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.379 0.621 43 H 0.168 0.832 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.015 6.662 -11.448 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 C -0.292 4.292 4 C 0.293 3.707 5 O -0.360 6.360 6 C -0.307 4.307 7 C 0.358 3.642 8 O -0.387 6.387 9 N -0.384 5.384 10 C 0.013 3.987 11 C -0.124 4.124 12 H 0.107 0.893 13 C 0.015 3.985 14 N -0.333 5.333 15 C -0.458 4.458 16 H 0.094 0.906 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.897 3.103 20 H -0.222 1.222 21 H -0.226 1.226 22 H -0.214 1.214 23 C -0.048 4.048 24 C 0.037 3.963 25 H 0.090 0.910 26 O -0.370 6.370 27 C 0.043 3.957 28 N -0.158 5.158 29 C -0.094 4.094 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.170 0.830 34 H 0.226 0.774 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.226 0.774 43 H 0.185 0.815 44 H 0.101 0.899 45 H 0.114 0.886 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.852 6.816 -12.015 25.852 hybrid contribution -0.876 0.192 0.747 1.167 sum -22.727 7.008 -11.269 26.318 Atomic orbital electron populations 1.21190 0.88026 1.05133 1.04062 1.20277 0.94885 0.84979 0.95032 1.22289 0.96310 0.97200 1.13434 1.18150 0.88239 0.87886 0.76421 1.90829 1.69930 1.33206 1.42060 1.22554 0.94352 0.95160 1.18673 1.17467 0.86124 0.83551 0.77102 1.90857 1.65855 1.33915 1.48054 1.45924 1.07905 1.07668 1.76926 1.21356 0.78880 0.95801 1.02692 1.22433 0.95494 0.94990 0.99505 0.89289 1.21437 0.91660 0.93248 0.92189 1.44625 1.17203 1.52449 1.18987 1.20027 1.21367 1.14539 0.89844 0.90567 1.25897 0.96132 0.96259 1.03747 1.70906 1.37433 1.49813 0.97726 0.83829 0.75448 0.76195 0.74785 1.22214 1.22576 1.21368 1.22690 0.95718 0.95255 0.91182 1.22951 0.94003 0.97645 0.81710 0.91005 1.86420 1.30084 1.95218 1.25231 1.22253 0.82190 0.99982 0.91235 1.42562 1.05288 1.07291 1.60679 1.22580 0.97950 0.84359 1.04559 0.89342 0.90051 0.88854 0.83027 0.77401 0.91054 0.90932 0.95343 0.94628 0.92605 0.91939 0.94164 0.77416 0.81520 0.89868 0.88577 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.25 9.32 36.01 0.34 0.09 16 2 C 0.15 0.94 6.64 -82.13 -0.54 0.40 16 3 C -0.27 -2.66 9.57 -39.47 -0.38 -3.04 16 4 C 0.41 6.14 6.96 -34.68 -0.24 5.90 16 5 O -0.48 -9.69 16.41 -15.17 -0.25 -9.94 16 6 C -0.30 -3.87 6.05 -102.72 -0.62 -4.49 16 7 C 0.57 9.21 7.77 -12.58 -0.10 9.11 16 8 O -0.51 -10.89 15.57 -14.76 -0.23 -11.12 16 9 N -0.73 -9.70 5.42 -61.43 -0.33 -10.03 16 10 C 0.14 2.06 5.02 -4.04 -0.02 2.04 16 11 C -0.10 -1.66 2.69 -88.78 -0.24 -1.90 16 12 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 13 C 0.14 2.65 6.76 -3.06 -0.02 2.63 16 14 N -0.60 -14.32 3.27 -170.07 -0.56 -14.87 16 15 C -0.33 -9.22 10.44 -15.06 -0.16 -9.38 16 16 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 17 C -0.02 -0.56 5.42 -17.43 -0.09 -0.66 16 18 N -0.92 -28.24 13.70 55.49 0.76 -27.48 16 19 Si 1.07 25.97 24.69 -169.99 -4.20 21.77 16 20 H -0.29 -6.73 6.61 56.52 0.37 -6.36 16 21 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -6.64 6.23 56.52 0.35 -6.29 16 23 C 0.08 1.62 4.43 -2.53 -0.01 1.61 16 24 C 0.10 1.65 3.88 -24.58 -0.10 1.56 16 25 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 26 O -0.56 -8.54 13.48 -35.23 -0.47 -9.02 16 27 C 0.17 1.33 9.79 -16.54 -0.16 1.16 16 28 N -0.47 -2.50 2.97 -119.75 -0.36 -2.86 16 29 C 0.05 0.05 9.99 59.85 0.60 0.64 16 30 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.08 0.02 6.04 -51.93 -0.31 -0.30 16 32 H 0.09 0.15 7.96 -51.93 -0.41 -0.26 16 33 H 0.15 1.28 8.00 -52.49 -0.42 0.86 16 34 H 0.39 3.87 6.55 -40.82 -0.27 3.60 16 35 H 0.07 1.18 7.94 -51.93 -0.41 0.77 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.04 0.69 7.69 -51.93 -0.40 0.30 16 39 H 0.26 8.03 8.73 -40.82 -0.36 7.67 16 40 H 0.06 1.38 6.24 -51.93 -0.32 1.06 16 41 H 0.04 0.87 5.58 -51.93 -0.29 0.58 16 42 H 0.38 4.21 9.11 45.56 0.42 4.62 16 43 H 0.17 0.73 6.29 -52.49 -0.33 0.40 16 44 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 45 H 0.10 0.00 7.87 -51.93 -0.41 -0.40 16 46 H 0.09 -0.06 5.92 -51.93 -0.31 -0.36 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -42.38 370.94 -7.45 -49.83 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.65 Total: 2.45 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.75 Total: 5.68 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.48 Total: -55.24 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.95 Total: -30.08 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -4.20 Total: 21.77 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -42.38 -7.45 -49.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958151566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.451 kcal (2) G-P(sol) polarization free energy of solvation -42.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds