Wall clock time and date at job start Tue Mar 31 2020 19:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34867 * 119.09876 * 2 1 4 4 C 1.41670 * 119.34039 * 179.97438 * 3 2 1 5 5 O 1.22086 * 121.06996 * 179.97438 * 4 3 2 6 6 C 1.47101 * 117.86020 * 359.97438 * 4 3 2 7 7 C 1.47288 * 120.88144 * 180.02562 * 6 4 3 8 8 O 1.21622 * 120.00232 * 359.97438 * 7 6 4 9 9 N 1.34778 * 120.00092 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00259 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47213 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.78345 * 51.76140 * 11 10 9 13 13 C 1.54332 * 110.84959 * 288.69057 * 11 10 9 14 14 N 1.47018 * 107.26599 * 219.67279 * 13 11 10 15 15 C 1.36945 * 125.65225 * 178.85006 * 14 13 11 16 16 H 1.08003 * 119.99429 * 346.91973 * 15 14 13 17 17 C 1.38808 * 120.00190 * 166.92010 * 15 14 13 18 18 N 1.31619 * 119.99783 * 155.22920 * 17 15 14 19 19 Si 1.86796 * 120.00376 * 335.23249 * 17 15 14 20 20 H 1.48495 * 109.47378 * 89.99859 * 19 17 15 21 21 H 1.48497 * 109.47077 * 210.00105 * 19 17 15 22 22 H 1.48505 * 109.46938 * 330.00204 * 19 17 15 23 23 C 1.47428 * 108.70337 * 358.58815 * 14 13 11 24 24 C 1.54902 * 104.83382 * 24.35436 * 23 14 13 25 25 H 1.09002 * 111.00806 * 81.06352 * 24 23 14 26 26 O 1.42902 * 111.00706 * 204.88043 * 24 23 14 27 27 C 1.37989 * 118.23753 * 0.26897 * 6 4 3 28 28 N 1.34346 * 120.37032 * 359.42383 * 27 6 4 29 29 C 1.46499 * 118.80737 * 180.32950 * 28 27 6 30 30 H 1.09002 * 109.46707 * 97.03839 * 1 2 3 31 31 H 1.08998 * 109.47051 * 217.04472 * 1 2 3 32 32 H 1.09003 * 109.47192 * 337.04590 * 1 2 3 33 33 H 1.07996 * 120.33168 * 359.97104 * 3 2 1 34 34 H 0.97006 * 119.99819 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47415 * 59.99824 * 10 9 7 36 36 H 1.09002 * 109.46736 * 299.99606 * 10 9 7 37 37 H 1.08997 * 109.99006 * 100.19937 * 13 11 10 38 38 H 1.09002 * 109.77986 * 339.03107 * 13 11 10 39 39 H 0.97003 * 120.00159 * 5.08833 * 18 17 15 40 40 H 1.09000 * 110.36955 * 143.19543 * 23 14 13 41 41 H 1.09001 * 110.36565 * 265.40275 * 23 14 13 42 42 H 0.96692 * 113.99653 * 298.54858 * 26 24 23 43 43 H 1.07998 * 119.81965 * 179.70642 * 27 6 4 44 44 H 1.08998 * 109.47141 * 265.00704 * 29 28 27 45 45 H 1.09000 * 109.46965 * 25.00746 * 29 28 27 46 46 H 1.09005 * 109.46915 * 145.00826 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1844 0.0006 5 8 4.2053 2.2328 0.0001 6 6 4.2725 -0.1132 0.0017 7 6 5.7437 -0.1846 0.0029 8 8 6.4022 0.8379 0.0025 9 7 6.3602 -1.3831 0.0044 10 6 7.8234 -1.4542 0.0062 11 6 8.2629 -2.9197 0.0084 12 1 7.7707 -3.4722 -0.7920 13 6 7.9764 -3.5770 1.3750 14 7 9.1168 -4.4510 1.6865 15 6 9.2616 -5.1992 2.8243 16 1 8.6166 -5.0226 3.6724 17 6 10.2373 -6.1845 2.8876 18 7 10.7177 -6.5609 4.0537 19 14 10.8687 -6.9761 1.3179 20 1 12.0315 -6.2060 0.8081 21 1 11.2857 -8.3729 1.6010 22 1 9.7906 -6.9786 0.2965 23 6 10.0757 -4.3936 0.5682 24 6 9.8055 -3.0305 -0.1163 25 1 10.2999 -2.2197 0.4189 26 8 10.2088 -3.0566 -1.4870 27 6 3.5077 -1.2617 -0.0036 28 7 2.1665 -1.1846 0.0021 29 6 1.3881 -2.4257 0.0037 30 1 -0.3633 -0.1259 -1.0200 31 1 -0.3633 -0.8202 0.6191 32 1 -0.3634 0.9463 0.4008 33 1 1.6137 2.1083 -0.0005 34 1 5.8350 -2.1987 0.0051 35 1 8.2103 -0.9580 0.8962 36 1 8.2122 -0.9592 -0.8838 37 1 7.0614 -4.1669 1.3203 38 1 7.8787 -2.8078 2.1411 39 1 10.3389 -6.2041 4.8724 40 1 11.0985 -4.4337 0.9429 41 1 9.8954 -5.2122 -0.1286 42 1 11.1527 -3.2220 -1.6160 43 1 3.9899 -2.2280 -0.0077 44 1 1.1150 -2.6846 -1.0193 45 1 1.9858 -3.2289 0.4345 46 1 0.4842 -2.2870 0.5970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958151566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:37 Heat of formation + Delta-G solvation = -84.276460 kcal Electronic energy + Delta-G solvation = -28883.836484 eV Core-core repulsion = 24773.728249 eV Total energy + Delta-G solvation = -4110.108236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.24864 -40.73318 -39.87791 -38.88535 -36.77674 -36.13924 -34.63494 -34.16751 -33.63172 -31.82170 -29.60978 -29.08854 -27.70474 -27.18567 -25.33715 -24.64234 -22.90130 -22.66781 -21.72489 -21.27645 -19.65473 -19.18460 -18.70599 -18.39132 -17.31444 -17.11217 -17.00911 -16.83265 -16.50063 -16.36616 -15.91104 -15.61932 -15.51754 -15.36236 -14.92269 -14.61402 -14.51226 -14.25527 -14.14112 -13.95227 -13.85663 -13.83151 -13.70590 -13.34105 -13.11713 -12.72807 -12.67715 -12.53661 -12.35891 -12.24838 -11.78730 -11.61241 -11.42146 -11.18968 -10.95060 -10.61267 -10.52915 -10.34754 -10.15089 -9.17940 -9.07545 -8.64097 -5.46765 -0.23204 0.31054 1.40955 1.45079 1.53651 1.70372 1.86361 2.05765 2.52541 2.76703 2.88676 3.15832 3.20425 3.42977 3.52451 3.58270 3.64272 3.69070 3.80223 3.96381 4.15590 4.22371 4.26566 4.28367 4.42163 4.43825 4.45945 4.68908 4.70904 4.72788 4.73243 4.81172 4.83125 4.85705 4.91968 4.99264 5.14815 5.19271 5.29257 5.36988 5.56345 5.68783 5.78223 6.08715 6.55127 6.77132 6.83905 7.07488 7.28934 7.45040 8.08824 8.84130 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002649 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.146221 B =10567.390274 C =11472.030331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.187 3.813 3 C -0.303 4.303 4 C 0.382 3.618 5 O -0.568 6.568 6 C -0.353 4.353 7 C 0.568 3.432 8 O -0.580 6.580 9 N -0.713 5.713 10 C 0.146 3.854 11 C -0.085 4.085 12 H 0.112 0.888 13 C 0.138 3.862 14 N -0.626 5.626 15 C -0.318 4.318 16 H 0.045 0.955 17 C -0.077 4.077 18 N -0.956 5.956 19 Si 1.106 2.894 20 H -0.272 1.272 21 H -0.307 1.307 22 H -0.263 1.263 23 C 0.072 3.928 24 C 0.109 3.891 25 H 0.072 0.928 26 O -0.562 6.562 27 C 0.222 3.778 28 N -0.455 5.455 29 C 0.031 3.969 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.411 0.589 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.025 0.975 39 H 0.248 0.752 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.398 0.602 43 H 0.211 0.789 44 H 0.108 0.892 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.518 3.821 -14.011 30.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.079 3.921 3 C -0.327 4.327 4 C 0.275 3.725 5 O -0.457 6.457 6 C -0.364 4.364 7 C 0.358 3.642 8 O -0.460 6.460 9 N -0.367 5.367 10 C 0.022 3.978 11 C -0.104 4.104 12 H 0.130 0.870 13 C 0.014 3.986 14 N -0.355 5.355 15 C -0.447 4.447 16 H 0.063 0.937 17 C -0.271 4.271 18 N -0.599 5.599 19 Si 0.932 3.068 20 H -0.198 1.198 21 H -0.235 1.235 22 H -0.188 1.188 23 C -0.053 4.053 24 C 0.048 3.952 25 H 0.090 0.910 26 O -0.369 6.369 27 C 0.087 3.913 28 N -0.138 5.138 29 C -0.108 4.108 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.172 0.828 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.248 0.752 43 H 0.227 0.773 44 H 0.126 0.874 45 H 0.134 0.866 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.447 3.917 -14.613 29.604 hybrid contribution -0.045 0.938 1.582 1.840 sum -25.492 4.855 -13.031 29.038 Atomic orbital electron populations 1.21406 0.83932 1.06794 1.06114 1.20850 0.97073 0.83911 0.90271 1.22152 0.94027 0.99466 1.17010 1.18968 0.90393 0.87840 0.75319 1.90769 1.71730 1.35610 1.47612 1.22157 0.93070 0.96385 1.24745 1.17975 0.87451 0.83110 0.75696 1.90812 1.67478 1.36233 1.51438 1.45667 1.07215 1.07821 1.76031 1.21109 0.79987 0.95121 1.01594 1.22272 0.95066 0.94890 0.98199 0.86986 1.21572 0.90990 0.92490 0.93586 1.44668 1.19778 1.52287 1.18718 1.19905 1.19950 1.14245 0.90583 0.93679 1.27157 0.97174 0.97125 1.05601 1.71027 1.39215 1.51633 0.98038 0.83322 0.76542 0.74890 0.72057 1.19843 1.23532 1.18785 1.22818 0.94338 0.97695 0.90496 1.22695 0.94733 0.95257 0.82470 0.91011 1.86398 1.32093 1.95030 1.23399 1.22668 0.83003 0.99596 0.86065 1.43207 1.04995 1.09055 1.56575 1.23144 0.98563 0.82101 1.06969 0.87008 0.86960 0.88417 0.82754 0.75091 0.93079 0.91374 0.93228 0.95728 0.94223 0.93413 0.93506 0.75175 0.77281 0.87407 0.86646 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.17 9.32 71.24 0.66 0.83 16 2 C 0.19 1.65 6.64 41.21 0.27 1.93 16 3 C -0.30 -6.11 9.57 22.34 0.21 -5.89 16 4 C 0.38 12.52 6.96 25.45 0.18 12.70 16 5 O -0.57 -26.05 16.41 13.54 0.22 -25.82 16 6 C -0.35 -9.34 6.05 -18.63 -0.11 -9.45 16 7 C 0.57 19.05 7.77 86.62 0.67 19.72 16 8 O -0.58 -26.83 15.57 15.04 0.23 -26.59 16 9 N -0.71 -18.06 5.42 -466.51 -2.53 -20.59 16 10 C 0.15 4.29 5.02 86.38 0.43 4.73 16 11 C -0.09 -2.46 2.69 -9.60 -0.03 -2.49 16 12 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 13 C 0.14 4.94 6.76 86.73 0.59 5.53 16 14 N -0.63 -28.84 3.27 -691.98 -2.26 -31.10 16 15 C -0.32 -17.88 10.44 84.03 0.88 -17.01 16 16 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 17 C -0.08 -4.44 5.42 84.86 0.46 -3.98 16 18 N -0.96 -60.31 13.70 21.65 0.30 -60.02 16 19 Si 1.11 51.40 24.69 68.60 1.69 53.09 16 20 H -0.27 -11.57 6.61 99.48 0.66 -10.92 16 21 H -0.31 -14.62 7.11 99.48 0.71 -13.91 16 22 H -0.26 -11.04 6.23 99.48 0.62 -10.42 16 23 C 0.07 2.84 4.43 86.85 0.38 3.22 16 24 C 0.11 3.44 3.88 31.99 0.12 3.57 16 25 H 0.07 2.29 8.05 -2.39 -0.02 2.27 16 26 O -0.56 -15.00 13.48 -148.98 -2.01 -17.01 16 27 C 0.22 2.59 9.79 84.25 0.83 3.41 16 28 N -0.46 -2.60 2.97 -532.76 -1.58 -4.18 16 29 C 0.03 -0.16 9.99 127.77 1.28 1.12 16 30 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.11 -0.74 6.04 -2.39 -0.01 -0.76 16 32 H 0.10 -0.08 7.96 -2.39 -0.02 -0.10 16 33 H 0.15 2.82 8.00 -2.91 -0.02 2.79 16 34 H 0.41 6.69 6.55 -92.70 -0.61 6.08 16 35 H 0.05 1.73 7.94 -2.39 -0.02 1.71 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.02 0.94 7.69 -2.39 -0.02 0.92 16 39 H 0.25 15.80 8.73 -92.71 -0.81 14.99 16 40 H 0.05 2.02 6.24 -2.39 -0.01 2.01 16 41 H 0.05 1.83 5.58 -2.39 -0.01 1.82 16 42 H 0.40 7.40 9.11 -74.06 -0.67 6.73 16 43 H 0.21 0.59 6.29 -2.91 -0.02 0.57 16 44 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.11 -0.87 7.87 -2.39 -0.02 -0.89 16 46 H 0.12 -1.08 5.92 -2.38 -0.01 -1.10 16 Total: -1.00 -105.17 370.94 0.48 -104.69 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -0.42 Total: 9.59 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 6.83 Total: 17.94 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -6.07 Total: -115.89 kcal Atomic # 8 Polarization: -67.87 SS G_CDS: -1.55 Total: -69.43 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 1.69 Total: 53.09 kcal Total: -105.17 0.48 -104.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958151566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.411 kcal (2) G-P(sol) polarization free energy of solvation -105.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds