Wall clock time and date at job start Tue Mar 31 2020 19:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34862 * 119.09999 * 2 1 4 4 C 1.41677 * 119.34111 * 179.69566 * 3 2 1 5 5 O 1.22077 * 121.07272 * 180.29675 * 4 3 2 6 6 C 1.47105 * 117.85777 * 0.53927 * 4 3 2 7 7 C 1.47287 * 120.87650 * 179.77969 * 6 4 3 8 8 O 1.21616 * 120.00672 * 359.72390 * 7 6 4 9 9 N 1.34777 * 119.99901 * 179.71716 * 7 6 4 10 10 C 1.46493 * 120.00414 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47620 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.63840 * 303.31577 * 11 10 9 13 13 C 1.54323 * 110.71987 * 66.45326 * 11 10 9 14 14 N 1.47020 * 107.27354 * 140.73490 * 13 11 10 15 15 C 1.36934 * 125.64898 * 181.01957 * 14 13 11 16 16 H 1.08007 * 120.00009 * 14.51605 * 15 14 13 17 17 C 1.38815 * 120.00082 * 194.50997 * 15 14 13 18 18 N 1.31620 * 119.99498 * 33.58236 * 17 15 14 19 19 Si 1.86804 * 120.00081 * 213.58181 * 17 15 14 20 20 H 1.48498 * 109.47079 * 60.00053 * 19 17 15 21 21 H 1.48505 * 109.46966 * 299.99991 * 19 17 15 22 22 H 1.48498 * 109.47030 * 180.02562 * 19 17 15 23 23 C 1.47421 * 108.70104 * 1.28985 * 14 13 11 24 24 C 1.55129 * 104.72144 * 335.54880 * 23 14 13 25 25 H 1.09004 * 111.19375 * 279.19256 * 24 23 14 26 26 O 1.42906 * 110.93851 * 155.28998 * 24 23 14 27 27 C 1.37983 * 118.23798 * 359.50468 * 6 4 3 28 28 N 1.34349 * 120.37314 * 0.23612 * 27 6 4 29 29 C 1.46499 * 118.80581 * 180.02562 * 28 27 6 30 30 H 1.09005 * 109.46959 * 263.63059 * 1 2 3 31 31 H 1.09001 * 109.47096 * 23.63173 * 1 2 3 32 32 H 1.08999 * 109.47447 * 143.63010 * 1 2 3 33 33 H 1.08005 * 120.33091 * 0.02562 * 3 2 1 34 34 H 0.97003 * 119.99909 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47416 * 59.99784 * 10 9 7 36 36 H 1.09007 * 109.47380 * 300.00330 * 10 9 7 37 37 H 1.09007 * 109.88080 * 21.31562 * 13 11 10 38 38 H 1.09006 * 110.01187 * 260.22995 * 13 11 10 39 39 H 0.96990 * 120.00322 * 3.43328 * 18 17 15 40 40 H 1.08999 * 110.37295 * 94.47901 * 23 14 13 41 41 H 1.09004 * 110.36407 * 216.80389 * 23 14 13 42 42 H 0.96700 * 113.99787 * 67.96275 * 26 24 23 43 43 H 1.08007 * 119.81573 * 180.24878 * 27 6 4 44 44 H 1.09005 * 109.47379 * 96.23648 * 29 28 27 45 45 H 1.08996 * 109.46892 * 216.23375 * 29 28 27 46 46 H 1.09003 * 109.47349 * 336.24096 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1844 0.0066 5 8 4.2052 2.2326 0.0122 6 6 4.2725 -0.1133 0.0009 7 6 5.7436 -0.1846 0.0023 8 8 6.4021 0.8379 0.0032 9 7 6.3602 -1.3831 0.0028 10 6 7.8234 -1.4542 0.0048 11 6 8.2629 -2.9197 0.0043 12 1 7.8355 -3.4493 0.8557 13 6 7.8693 -3.6074 -1.3200 14 7 8.9774 -4.4975 -1.6958 15 6 9.0293 -5.2757 -2.8214 16 1 8.3363 -5.1010 -3.6312 17 6 9.9728 -6.2889 -2.9217 18 7 10.3441 -6.9511 -1.8465 19 14 10.7154 -6.7127 -4.5827 20 1 11.4091 -5.5208 -5.1333 21 1 9.6376 -7.1325 -5.5141 22 1 11.6891 -7.8221 -4.4210 23 6 10.0203 -4.4185 -0.6570 24 6 9.8103 -3.0328 0.0079 25 1 10.2616 -2.2381 -0.5863 26 8 10.3214 -3.0240 1.3425 27 6 3.5077 -1.2618 0.0000 28 7 2.1664 -1.1847 -0.0005 29 6 1.3881 -2.4258 -0.0008 30 1 -0.3633 -0.1140 1.0214 31 1 -0.3633 0.9415 -0.4119 32 1 -0.3634 -0.8275 -0.6094 33 1 1.6136 2.1083 0.0004 34 1 5.8350 -2.1987 0.0026 35 1 8.2100 -0.9588 0.8954 36 1 8.2125 -0.9582 -0.8845 37 1 7.7167 -2.8573 -2.0961 38 1 6.9574 -4.1884 -1.1819 39 1 9.9228 -6.7653 -0.9929 40 1 9.8890 -5.2164 0.0740 41 1 11.0107 -4.4759 -1.1087 42 1 11.2845 -3.0926 1.3952 43 1 3.9900 -2.2282 0.0000 44 1 1.1000 -2.6744 1.0207 45 1 0.4930 -2.2932 -0.6086 46 1 1.9920 -3.2334 -0.4146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958151568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:42 Heat of formation + Delta-G solvation = -53.399380 kcal Electronic energy + Delta-G solvation = -28846.778954 eV Core-core repulsion = 24738.009649 eV Total energy + Delta-G solvation = -4108.769305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.51407 -39.47062 -38.43201 -37.77051 -35.31860 -34.69598 -33.85158 -33.00816 -32.21316 -29.88023 -28.50231 -27.68555 -27.27279 -25.40708 -24.49978 -23.49813 -21.88559 -20.95380 -20.32230 -19.96675 -18.34811 -17.87414 -17.57628 -16.98727 -16.49336 -16.44692 -16.01292 -15.47866 -15.14973 -14.74022 -14.62492 -14.38265 -13.95577 -13.86756 -13.77200 -13.61517 -13.54456 -13.47307 -13.28666 -12.88323 -12.83064 -12.46228 -12.36992 -12.23486 -12.22047 -11.96102 -11.14681 -10.93673 -10.76060 -10.56368 -10.18502 -10.06026 -9.92322 -9.82215 -9.81248 -9.44147 -9.22571 -8.91350 -8.40356 -8.19475 -7.04941 -6.25474 -3.19302 0.59570 1.02840 1.98490 2.98499 3.19249 3.45034 3.50996 3.68042 3.68949 3.76522 4.04434 4.15519 4.34128 4.40137 4.45760 4.57837 4.68058 4.75920 4.79480 4.86143 4.90996 5.06231 5.12467 5.20628 5.21483 5.35252 5.39326 5.47562 5.55043 5.73676 5.79717 5.92486 6.02981 6.14493 6.22059 6.23260 6.40266 6.44750 6.55239 6.65140 6.78759 6.88698 7.61748 7.69096 7.96742 8.03383 8.40045 8.43693 8.90889 9.72671 10.27142 11.10666 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.002625 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.537743 B =10665.515587 C =11718.655058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 C -0.269 4.269 4 C 0.408 3.592 5 O -0.480 6.480 6 C -0.297 4.297 7 C 0.571 3.429 8 O -0.513 6.513 9 N -0.730 5.730 10 C 0.137 3.863 11 C -0.104 4.104 12 H 0.087 0.913 13 C 0.142 3.858 14 N -0.598 5.598 15 C -0.348 4.348 16 H 0.067 0.933 17 C -0.021 4.021 18 N -0.906 5.906 19 Si 1.060 2.940 20 H -0.293 1.293 21 H -0.292 1.292 22 H -0.285 1.285 23 C 0.119 3.881 24 C 0.091 3.909 25 H 0.067 0.933 26 O -0.565 6.565 27 C 0.174 3.826 28 N -0.471 5.471 29 C 0.047 3.953 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.392 0.608 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.023 0.977 39 H 0.269 0.731 40 H 0.034 0.966 41 H 0.053 0.947 42 H 0.378 0.622 43 H 0.168 0.832 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.598 7.452 6.268 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 C -0.293 4.293 4 C 0.293 3.707 5 O -0.361 6.361 6 C -0.308 4.308 7 C 0.358 3.642 8 O -0.388 6.388 9 N -0.384 5.384 10 C 0.013 3.987 11 C -0.123 4.123 12 H 0.105 0.895 13 C 0.016 3.984 14 N -0.326 5.326 15 C -0.475 4.475 16 H 0.085 0.915 17 C -0.224 4.224 18 N -0.546 5.546 19 Si 0.890 3.110 20 H -0.220 1.220 21 H -0.219 1.219 22 H -0.211 1.211 23 C -0.007 4.007 24 C 0.031 3.969 25 H 0.085 0.915 26 O -0.370 6.370 27 C 0.044 3.956 28 N -0.158 5.158 29 C -0.094 4.094 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.170 0.830 34 H 0.226 0.774 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.225 0.775 43 H 0.185 0.815 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.428 7.636 5.548 22.503 hybrid contribution -0.919 0.148 0.586 1.101 sum -21.347 7.784 6.134 23.536 Atomic orbital electron populations 1.21188 0.88028 1.05108 1.04088 1.20275 0.94883 0.84978 0.95016 1.22287 0.96306 0.97196 1.13486 1.18148 0.88235 0.87876 0.76409 1.90824 1.69931 1.33211 1.42095 1.22557 0.94365 0.95155 1.18684 1.17466 0.86122 0.83554 0.77104 1.90851 1.65860 1.33925 1.48138 1.45924 1.07945 1.07663 1.76830 1.21346 0.78837 0.95966 1.02532 1.22399 0.95467 0.94677 0.99784 0.89512 1.21392 0.91998 0.92899 0.92124 1.44394 1.14483 1.49856 1.23910 1.19662 1.21518 1.13845 0.92507 0.91486 1.25734 0.98995 0.92877 1.04799 1.70817 1.46988 1.35315 1.01437 0.83586 0.76661 0.75972 0.74804 1.22023 1.21936 1.21087 1.22173 0.93979 0.93033 0.91512 1.23080 0.92849 0.98268 0.82695 0.91488 1.86416 1.26447 1.96958 1.27180 1.22263 0.82187 1.00001 0.91191 1.42567 1.05285 1.07292 1.60667 1.22579 0.97937 0.84361 1.04558 0.89329 0.88858 0.90065 0.83029 0.77385 0.91063 0.91193 0.94969 0.95907 0.92032 0.94782 0.92885 0.77535 0.81520 0.89853 0.88749 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.28 9.34 36.00 0.34 0.06 16 2 C 0.15 0.99 6.64 -82.13 -0.55 0.44 16 3 C -0.27 -2.73 9.57 -39.47 -0.38 -3.11 16 4 C 0.41 6.26 6.97 -34.67 -0.24 6.02 16 5 O -0.48 -9.81 16.41 -15.17 -0.25 -10.05 16 6 C -0.30 -3.99 6.05 -102.72 -0.62 -4.61 16 7 C 0.57 9.46 7.77 -12.58 -0.10 9.37 16 8 O -0.51 -11.09 15.57 -14.75 -0.23 -11.32 16 9 N -0.73 -10.16 5.35 -61.43 -0.33 -10.49 16 10 C 0.14 2.16 5.01 -4.04 -0.02 2.14 16 11 C -0.10 -1.75 2.74 -88.79 -0.24 -1.99 16 12 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 13 C 0.14 2.78 6.52 -3.07 -0.02 2.76 16 14 N -0.60 -14.72 3.31 -169.93 -0.56 -15.28 16 15 C -0.35 -9.61 9.97 -15.06 -0.15 -9.76 16 16 H 0.07 1.85 8.02 -52.48 -0.42 1.43 16 17 C -0.02 -0.60 4.97 -17.43 -0.09 -0.68 16 18 N -0.91 -26.75 12.99 55.49 0.72 -26.03 16 19 Si 1.06 24.85 30.03 -169.99 -5.10 19.74 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.12 2.69 5.10 -2.41 -0.01 2.68 16 24 C 0.09 1.65 3.90 -24.46 -0.10 1.56 16 25 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 26 O -0.57 -9.25 13.47 -35.23 -0.47 -9.73 16 27 C 0.17 1.41 9.80 -16.54 -0.16 1.24 16 28 N -0.47 -2.67 2.97 -119.75 -0.36 -3.02 16 29 C 0.05 0.06 9.97 59.85 0.60 0.66 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.09 0.17 7.97 -51.93 -0.41 -0.25 16 32 H 0.08 0.04 6.03 -51.93 -0.31 -0.28 16 33 H 0.15 1.31 8.00 -52.48 -0.42 0.89 16 34 H 0.39 4.20 6.40 -40.82 -0.26 3.93 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.19 8.06 -51.92 -0.42 0.78 16 37 H 0.03 0.64 7.77 -51.92 -0.40 0.24 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.27 7.97 6.36 -40.82 -0.26 7.71 16 40 H 0.03 0.83 6.96 -51.93 -0.36 0.47 16 41 H 0.05 1.29 7.93 -51.93 -0.41 0.88 16 42 H 0.38 4.66 9.12 45.56 0.42 5.07 16 43 H 0.17 0.83 6.28 -52.48 -0.33 0.50 16 44 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 45 H 0.09 -0.03 5.96 -51.93 -0.31 -0.33 16 46 H 0.10 0.05 7.85 -51.93 -0.41 -0.36 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -41.73 377.19 -8.28 -50.01 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.64 Total: 3.70 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.74 Total: 6.77 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.53 Total: -54.82 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.95 Total: -31.10 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.10 Total: 19.74 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -41.73 -8.28 -50.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958151568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.384 kcal (2) G-P(sol) polarization free energy of solvation -41.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds