Wall clock time and date at job start Tue Mar 31 2020 19:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34862 * 119.09999 * 2 1 4 4 C 1.41677 * 119.34111 * 179.69566 * 3 2 1 5 5 O 1.22077 * 121.07272 * 180.29675 * 4 3 2 6 6 C 1.47105 * 117.85777 * 0.53927 * 4 3 2 7 7 C 1.47287 * 120.87650 * 179.77969 * 6 4 3 8 8 O 1.21616 * 120.00672 * 359.72390 * 7 6 4 9 9 N 1.34777 * 119.99901 * 179.71716 * 7 6 4 10 10 C 1.46493 * 120.00414 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47620 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.63840 * 303.31577 * 11 10 9 13 13 C 1.54323 * 110.71987 * 66.45326 * 11 10 9 14 14 N 1.47020 * 107.27354 * 140.73490 * 13 11 10 15 15 C 1.36934 * 125.64898 * 181.01957 * 14 13 11 16 16 H 1.08007 * 120.00009 * 14.51605 * 15 14 13 17 17 C 1.38815 * 120.00082 * 194.50997 * 15 14 13 18 18 N 1.31620 * 119.99498 * 33.58236 * 17 15 14 19 19 Si 1.86804 * 120.00081 * 213.58181 * 17 15 14 20 20 H 1.48498 * 109.47079 * 60.00053 * 19 17 15 21 21 H 1.48505 * 109.46966 * 299.99991 * 19 17 15 22 22 H 1.48498 * 109.47030 * 180.02562 * 19 17 15 23 23 C 1.47421 * 108.70104 * 1.28985 * 14 13 11 24 24 C 1.55129 * 104.72144 * 335.54880 * 23 14 13 25 25 H 1.09004 * 111.19375 * 279.19256 * 24 23 14 26 26 O 1.42906 * 110.93851 * 155.28998 * 24 23 14 27 27 C 1.37983 * 118.23798 * 359.50468 * 6 4 3 28 28 N 1.34349 * 120.37314 * 0.23612 * 27 6 4 29 29 C 1.46499 * 118.80581 * 180.02562 * 28 27 6 30 30 H 1.09005 * 109.46959 * 263.63059 * 1 2 3 31 31 H 1.09001 * 109.47096 * 23.63173 * 1 2 3 32 32 H 1.08999 * 109.47447 * 143.63010 * 1 2 3 33 33 H 1.08005 * 120.33091 * 0.02562 * 3 2 1 34 34 H 0.97003 * 119.99909 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47416 * 59.99784 * 10 9 7 36 36 H 1.09007 * 109.47380 * 300.00330 * 10 9 7 37 37 H 1.09007 * 109.88080 * 21.31562 * 13 11 10 38 38 H 1.09006 * 110.01187 * 260.22995 * 13 11 10 39 39 H 0.96990 * 120.00322 * 3.43328 * 18 17 15 40 40 H 1.08999 * 110.37295 * 94.47901 * 23 14 13 41 41 H 1.09004 * 110.36407 * 216.80389 * 23 14 13 42 42 H 0.96700 * 113.99787 * 67.96275 * 26 24 23 43 43 H 1.08007 * 119.81573 * 180.24878 * 27 6 4 44 44 H 1.09005 * 109.47379 * 96.23648 * 29 28 27 45 45 H 1.08996 * 109.46892 * 216.23375 * 29 28 27 46 46 H 1.09003 * 109.47349 * 336.24096 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1844 0.0066 5 8 4.2052 2.2326 0.0122 6 6 4.2725 -0.1133 0.0009 7 6 5.7436 -0.1846 0.0023 8 8 6.4021 0.8379 0.0032 9 7 6.3602 -1.3831 0.0028 10 6 7.8234 -1.4542 0.0048 11 6 8.2629 -2.9197 0.0043 12 1 7.8355 -3.4493 0.8557 13 6 7.8693 -3.6074 -1.3200 14 7 8.9774 -4.4975 -1.6958 15 6 9.0293 -5.2757 -2.8214 16 1 8.3363 -5.1010 -3.6312 17 6 9.9728 -6.2889 -2.9217 18 7 10.3441 -6.9511 -1.8465 19 14 10.7154 -6.7127 -4.5827 20 1 11.4091 -5.5208 -5.1333 21 1 9.6376 -7.1325 -5.5141 22 1 11.6891 -7.8221 -4.4210 23 6 10.0203 -4.4185 -0.6570 24 6 9.8103 -3.0328 0.0079 25 1 10.2616 -2.2381 -0.5863 26 8 10.3214 -3.0240 1.3425 27 6 3.5077 -1.2618 0.0000 28 7 2.1664 -1.1847 -0.0005 29 6 1.3881 -2.4258 -0.0008 30 1 -0.3633 -0.1140 1.0214 31 1 -0.3633 0.9415 -0.4119 32 1 -0.3634 -0.8275 -0.6094 33 1 1.6136 2.1083 0.0004 34 1 5.8350 -2.1987 0.0026 35 1 8.2100 -0.9588 0.8954 36 1 8.2125 -0.9582 -0.8845 37 1 7.7167 -2.8573 -2.0961 38 1 6.9574 -4.1884 -1.1819 39 1 9.9228 -6.7653 -0.9929 40 1 9.8890 -5.2164 0.0740 41 1 11.0107 -4.4759 -1.1087 42 1 11.2845 -3.0926 1.3952 43 1 3.9900 -2.2282 0.0000 44 1 1.1000 -2.6744 1.0207 45 1 0.4930 -2.2932 -0.6086 46 1 1.9920 -3.2334 -0.4146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958151568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:41 Heat of formation + Delta-G solvation = -86.882275 kcal Electronic energy + Delta-G solvation = -28848.230882 eV Core-core repulsion = 24738.009649 eV Total energy + Delta-G solvation = -4110.221232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.25818 -40.73715 -39.85075 -38.89093 -36.83117 -36.19369 -34.64375 -34.07984 -33.55299 -31.39199 -29.63789 -28.97361 -27.70600 -27.00455 -25.49493 -24.92955 -22.88441 -22.36455 -21.71810 -21.33844 -19.64481 -19.21724 -18.71024 -18.31221 -17.29071 -17.05767 -16.94372 -16.77170 -16.39249 -16.35899 -15.81173 -15.63069 -15.49531 -15.34234 -14.90894 -14.62023 -14.41925 -14.25169 -14.04114 -13.91947 -13.85716 -13.82315 -13.59587 -13.34954 -12.79711 -12.70549 -12.62801 -12.54111 -12.40268 -12.32538 -11.90644 -11.78251 -11.63542 -11.24150 -10.99425 -10.53884 -10.46625 -10.35485 -10.17017 -9.08331 -9.05721 -8.42541 -5.32430 -0.24340 0.30360 1.44018 1.57547 1.65212 1.84355 1.85158 2.03250 2.59289 2.75784 3.00175 3.17403 3.19554 3.47013 3.52579 3.57988 3.64270 3.74689 3.79762 3.95349 4.14303 4.21735 4.25629 4.28849 4.40633 4.43816 4.45307 4.66860 4.70458 4.72376 4.79482 4.81142 4.82178 4.85061 4.94687 5.09321 5.14428 5.17220 5.28204 5.33922 5.65488 5.67769 5.77653 6.27049 6.52394 6.75494 6.84707 7.06658 7.26613 7.66557 8.24666 8.93557 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.002625 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.537743 B =10665.515587 C =11718.655058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.186 3.814 3 C -0.303 4.303 4 C 0.383 3.617 5 O -0.567 6.567 6 C -0.353 4.353 7 C 0.569 3.431 8 O -0.579 6.579 9 N -0.714 5.714 10 C 0.148 3.852 11 C -0.084 4.084 12 H 0.100 0.900 13 C 0.141 3.859 14 N -0.621 5.621 15 C -0.355 4.355 16 H 0.064 0.936 17 C -0.072 4.072 18 N -0.934 5.934 19 Si 1.110 2.890 20 H -0.285 1.285 21 H -0.272 1.272 22 H -0.292 1.292 23 C 0.125 3.875 24 C 0.106 3.894 25 H 0.074 0.926 26 O -0.565 6.565 27 C 0.221 3.779 28 N -0.455 5.455 29 C 0.031 3.969 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.156 0.844 34 H 0.410 0.590 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.032 0.968 38 H 0.039 0.961 39 H 0.256 0.744 40 H 0.014 0.986 41 H 0.025 0.975 42 H 0.396 0.604 43 H 0.208 0.792 44 H 0.107 0.893 45 H 0.121 0.879 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.284 5.097 6.181 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.079 3.921 3 C -0.326 4.326 4 C 0.276 3.724 5 O -0.456 6.456 6 C -0.363 4.363 7 C 0.358 3.642 8 O -0.458 6.458 9 N -0.368 5.368 10 C 0.024 3.976 11 C -0.103 4.103 12 H 0.118 0.882 13 C 0.016 3.984 14 N -0.349 5.349 15 C -0.483 4.483 16 H 0.082 0.918 17 C -0.269 4.269 18 N -0.575 5.575 19 Si 0.934 3.066 20 H -0.211 1.211 21 H -0.197 1.197 22 H -0.218 1.218 23 C -0.001 4.001 24 C 0.045 3.955 25 H 0.091 0.909 26 O -0.372 6.372 27 C 0.086 3.914 28 N -0.138 5.138 29 C -0.108 4.108 30 H 0.130 0.870 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.174 0.826 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.031 0.969 41 H 0.043 0.957 42 H 0.246 0.754 43 H 0.224 0.776 44 H 0.125 0.875 45 H 0.139 0.861 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -24.210 5.212 5.473 25.362 hybrid contribution 0.003 0.694 0.654 0.953 sum -24.207 5.906 6.126 25.659 Atomic orbital electron populations 1.21407 0.83877 1.06843 1.06110 1.20861 0.97097 0.83870 0.90282 1.22156 0.93978 0.99479 1.16952 1.18951 0.90396 0.87758 0.75316 1.90765 1.71715 1.35558 1.47575 1.22163 0.93011 0.96430 1.24727 1.17972 0.87474 0.83030 0.75682 1.90807 1.67460 1.36145 1.51432 1.45675 1.07187 1.07862 1.76059 1.21077 0.80028 0.94827 1.01654 1.22219 0.94541 0.94875 0.98715 0.88225 1.21516 0.91247 0.92268 0.93352 1.44627 1.16652 1.49828 1.23839 1.19911 1.21286 1.13642 0.93492 0.91818 1.27026 0.99548 0.93239 1.07098 1.70932 1.48142 1.36951 1.01517 0.82918 0.76322 0.75738 0.71586 1.21144 1.19703 1.21792 1.22075 0.92269 0.95074 0.90712 1.22820 0.93951 0.95471 0.83249 0.90864 1.86389 1.28397 1.96674 1.25753 1.22642 0.83068 0.99545 0.86148 1.43204 1.04933 1.09095 1.56591 1.23138 0.98563 0.82108 1.06950 0.87045 0.88310 0.86969 0.82624 0.75241 0.91565 0.92686 0.95020 0.94253 0.93427 0.96855 0.95677 0.75407 0.77575 0.87459 0.86088 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.12 9.34 71.24 0.67 0.79 16 2 C 0.19 1.75 6.64 41.20 0.27 2.02 16 3 C -0.30 -6.19 9.57 22.34 0.21 -5.97 16 4 C 0.38 12.72 6.97 25.45 0.18 12.90 16 5 O -0.57 -26.14 16.41 13.57 0.22 -25.91 16 6 C -0.35 -9.63 6.05 -18.63 -0.11 -9.74 16 7 C 0.57 19.62 7.77 86.62 0.67 20.30 16 8 O -0.58 -27.13 15.57 15.06 0.23 -26.89 16 9 N -0.71 -19.27 5.35 -466.52 -2.50 -21.77 16 10 C 0.15 4.63 5.01 86.38 0.43 5.06 16 11 C -0.08 -2.71 2.74 -9.61 -0.03 -2.74 16 12 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 13 C 0.14 5.34 6.52 86.73 0.57 5.90 16 14 N -0.62 -30.45 3.31 -691.53 -2.29 -32.74 16 15 C -0.36 -19.56 9.97 84.03 0.84 -18.72 16 16 H 0.06 3.47 8.02 -2.91 -0.02 3.45 16 17 C -0.07 -4.02 4.97 84.86 0.42 -3.60 16 18 N -0.93 -55.96 12.99 21.65 0.28 -55.68 16 19 Si 1.11 50.02 30.03 68.60 2.06 52.08 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 C 0.13 5.70 5.10 86.93 0.44 6.15 16 24 C 0.11 3.75 3.90 32.06 0.12 3.88 16 25 H 0.07 2.54 8.05 -2.38 -0.02 2.52 16 26 O -0.57 -17.76 13.47 -148.98 -2.01 -19.77 16 27 C 0.22 2.84 9.80 84.25 0.83 3.66 16 28 N -0.46 -2.99 2.97 -532.77 -1.58 -4.57 16 29 C 0.03 -0.13 9.97 127.77 1.27 1.14 16 30 H 0.11 -0.42 8.14 -2.38 -0.02 -0.44 16 31 H 0.10 -0.07 7.97 -2.39 -0.02 -0.08 16 32 H 0.11 -0.70 6.03 -2.39 -0.01 -0.72 16 33 H 0.16 2.86 8.00 -2.91 -0.02 2.83 16 34 H 0.41 7.63 6.40 -92.71 -0.59 7.03 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 1.91 8.06 -2.38 -0.02 1.89 16 37 H 0.03 1.22 7.77 -2.38 -0.02 1.20 16 38 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.26 15.54 6.36 -92.72 -0.59 14.95 16 40 H 0.01 0.68 6.96 -2.39 -0.02 0.66 16 41 H 0.02 1.25 7.93 -2.38 -0.02 1.24 16 42 H 0.40 9.29 9.12 -74.06 -0.68 8.61 16 43 H 0.21 0.95 6.28 -2.91 -0.02 0.93 16 44 H 0.11 -0.76 8.14 -2.38 -0.02 -0.77 16 45 H 0.12 -1.01 5.96 -2.39 -0.01 -1.02 16 46 H 0.11 -0.72 7.85 -2.39 -0.02 -0.74 16 Total: -1.00 -102.16 377.19 1.16 -101.01 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -0.06 Total: 13.22 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 6.79 Total: 21.01 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -6.08 Total: -114.75 kcal Atomic # 8 Polarization: -71.02 SS G_CDS: -1.55 Total: -72.57 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.06 Total: 52.08 kcal Total: -102.16 1.16 -101.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958151568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.125 kcal (2) G-P(sol) polarization free energy of solvation -102.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds