Wall clock time and date at job start Tue Mar 31 2020 18:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33494 * 126.82674 * 2 1 4 4 N 1.20658 * 113.15788 * 180.30373 * 3 2 1 5 5 C 1.30012 * 112.29787 * 359.74923 * 4 3 2 6 6 C 1.50699 * 127.33275 * 179.97438 * 5 4 3 7 7 C 1.53004 * 117.50070 * 8.75295 * 6 5 4 8 8 C 1.53001 * 117.50070 * 300.09281 * 6 5 4 9 9 C 1.37357 * 126.83555 * 179.89171 * 2 1 3 10 10 C 1.47405 * 128.55837 * 359.97438 * 9 2 1 11 11 O 1.21599 * 120.00468 * 269.67536 * 10 9 2 12 12 N 1.34777 * 119.99369 * 89.68049 * 10 9 2 13 13 C 1.46503 * 119.99727 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47144 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.78092 * 308.23946 * 14 13 12 16 16 C 1.54332 * 110.71977 * 71.47959 * 14 13 12 17 17 N 1.47019 * 107.26809 * 140.55907 * 16 14 13 18 18 C 1.36946 * 125.64345 * 181.10024 * 17 16 14 19 19 H 1.07994 * 119.99874 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99757 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00163 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99863 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47135 * 89.99729 * 22 20 18 24 24 H 1.48498 * 109.46807 * 209.99525 * 22 20 18 25 25 H 1.48499 * 109.46873 * 329.99635 * 22 20 18 26 26 C 1.47418 * 108.70625 * 1.05636 * 17 16 14 27 27 C 1.54907 * 104.83493 * 335.87400 * 26 17 16 28 28 H 1.09002 * 111.00447 * 278.93466 * 27 26 17 29 29 O 1.42903 * 111.00667 * 155.12104 * 27 26 17 30 30 H 1.09001 * 109.47017 * 270.10522 * 1 2 3 31 31 H 1.08994 * 109.47333 * 30.10480 * 1 2 3 32 32 H 1.09002 * 109.46750 * 150.10976 * 1 2 3 33 33 H 1.09005 * 115.55172 * 154.41709 * 6 5 4 34 34 H 1.09003 * 117.49762 * 359.97438 * 7 6 5 35 35 H 1.08994 * 117.50117 * 145.01647 * 7 6 5 36 36 H 1.09008 * 117.49575 * 214.97930 * 8 6 5 37 37 H 1.08994 * 117.49924 * 359.97053 * 8 6 5 38 38 H 0.97002 * 120.00350 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.46656 * 60.00058 * 13 12 10 40 40 H 1.09001 * 109.47103 * 299.99940 * 13 12 10 41 41 H 1.08993 * 109.88239 * 21.13743 * 16 14 13 42 42 H 1.09000 * 109.88233 * 259.97435 * 16 14 13 43 43 H 0.96997 * 120.00312 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.36673 * 217.03608 * 26 17 16 45 45 H 1.08997 * 110.36612 * 94.71882 * 26 17 16 46 46 H 0.96702 * 113.99924 * 64.57918 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3071 1.0686 0.0000 4 7 3.4795 0.7834 -0.0059 5 6 3.6746 -0.5020 -0.0055 6 6 4.9964 -1.2257 -0.0123 7 6 6.2615 -0.3883 0.1861 8 6 5.9362 -0.9695 -1.1922 9 6 2.3305 -1.0993 0.0021 10 6 1.9587 -2.5258 0.0053 11 8 1.8116 -3.1134 1.0596 12 7 1.7821 -3.1786 -1.1605 13 6 1.4132 -4.5964 -1.1574 14 6 1.2756 -5.0907 -2.5988 15 1 0.6146 -4.4387 -3.1698 16 6 2.6590 -5.1935 -3.2752 17 7 2.6535 -6.4126 -4.0969 18 6 3.7035 -6.8764 -4.8437 19 1 4.6360 -6.3319 -4.8609 20 6 3.5693 -8.0465 -5.5785 21 7 2.4331 -8.7104 -5.5570 22 14 5.0014 -8.6787 -6.5977 23 1 5.8348 -9.5875 -5.7702 24 1 4.4819 -9.4189 -7.7756 25 1 5.8259 -7.5324 -7.0575 26 6 1.3308 -7.0536 -3.9830 27 6 0.7637 -6.5551 -2.6304 28 1 1.1726 -7.1300 -1.7996 29 8 -0.6647 -6.5994 -2.6264 30 1 -0.3633 0.0019 1.0277 31 1 -0.3634 0.8890 -0.5154 32 1 -0.3633 -0.8910 -0.5121 33 1 4.9852 -2.2291 0.4136 34 1 6.1377 0.6863 0.3210 35 1 7.0826 -0.8408 0.7420 36 1 6.5435 -1.8043 -1.5423 37 1 5.5982 -0.2779 -1.9638 38 1 1.8992 -2.7098 -2.0016 39 1 0.4635 -4.7235 -0.6378 40 1 2.1861 -5.1718 -0.6478 41 1 3.4385 -5.2614 -2.5164 42 1 2.8285 -4.3215 -3.9068 43 1 2.3394 -9.5282 -6.0701 44 1 1.4346 -8.1387 -3.9740 45 1 0.6855 -6.7403 -4.8036 46 1 -1.0307 -7.4918 -2.6949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958267742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:16 Heat of formation + Delta-G solvation = 26.146787 kcal Electronic energy + Delta-G solvation = -29091.553065 eV Core-core repulsion = 24986.233140 eV Total energy + Delta-G solvation = -4105.319924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.08885 -39.71981 -38.24456 -37.70963 -35.22375 -34.70849 -34.01248 -33.07610 -32.26120 -29.87621 -28.34400 -27.59477 -25.95245 -24.99310 -24.13409 -23.05798 -22.63009 -20.98234 -20.32957 -19.94214 -19.42830 -18.09728 -17.96650 -17.07289 -16.97728 -16.58533 -15.92765 -15.62556 -15.38302 -14.98277 -14.76191 -14.29363 -13.97178 -13.78207 -13.61071 -13.58515 -13.08758 -12.99444 -12.86333 -12.46529 -12.28351 -12.01200 -11.87884 -11.78233 -11.64095 -11.47835 -11.29994 -11.01842 -10.86069 -10.70586 -10.67460 -10.36479 -10.11279 -9.93721 -9.75923 -9.70977 -9.60181 -9.24245 -9.09299 -8.75769 -6.96401 -5.76431 -3.19075 1.07376 1.62537 2.30089 2.60931 3.16962 3.33978 3.39210 3.41054 3.54807 3.72345 4.04074 4.36476 4.52101 4.58653 4.63579 4.67864 4.73366 4.81692 4.97079 5.04048 5.10843 5.15379 5.24009 5.38464 5.39160 5.44055 5.47295 5.56334 5.60885 5.67599 5.80907 5.85718 5.87624 5.95663 5.98985 6.13957 6.26733 6.37659 6.52834 6.74879 7.29506 7.38574 7.49372 7.68789 8.00121 8.05616 8.10082 8.23535 9.09742 9.70630 10.33323 11.27650 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.003042 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.847599 B = 9203.130659 C =10884.378643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.017 3.983 3 O 0.096 5.904 4 N -0.355 5.355 5 C 0.091 3.909 6 C -0.094 4.094 7 C -0.161 4.161 8 C -0.155 4.155 9 C -0.244 4.244 10 C 0.598 3.402 11 O -0.528 6.528 12 N -0.710 5.710 13 C 0.132 3.868 14 C -0.105 4.105 15 H 0.087 0.913 16 C 0.141 3.859 17 N -0.601 5.601 18 C -0.225 4.225 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.916 3.084 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.128 3.872 27 C 0.081 3.919 28 H 0.061 0.939 29 O -0.570 6.570 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.404 0.596 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.029 0.971 42 H 0.025 0.975 43 H 0.253 0.747 44 H 0.110 0.890 45 H 0.022 0.978 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 15.654 10.325 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 O 0.035 5.965 4 N -0.061 5.061 5 C -0.070 4.070 6 C -0.113 4.113 7 C -0.199 4.199 8 C -0.193 4.193 9 C -0.252 4.252 10 C 0.382 3.618 11 O -0.404 6.404 12 N -0.361 5.361 13 C 0.009 3.991 14 C -0.124 4.124 15 H 0.105 0.895 16 C 0.015 3.985 17 N -0.328 5.328 18 C -0.353 4.353 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.747 3.253 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.002 3.998 27 C 0.021 3.979 28 H 0.079 0.921 29 O -0.375 6.375 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.147 0.853 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.238 0.762 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.064 0.936 44 H 0.127 0.873 45 H 0.040 0.960 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.701 16.760 10.979 20.108 hybrid contribution 0.423 -1.441 -1.039 1.826 sum -1.278 15.319 9.940 18.306 Atomic orbital electron populations 1.20477 0.83059 1.05203 1.04867 1.24612 0.96010 0.85089 0.98912 1.84537 1.11080 1.32859 1.68034 1.73545 0.95808 1.16355 1.20381 1.23725 0.94270 0.88515 1.00531 1.20294 0.84848 0.99789 1.06403 1.23038 0.96930 1.00085 0.99804 1.23091 1.01101 1.03698 0.91437 1.21855 0.92696 0.95267 1.15340 1.16830 0.76976 0.83855 0.84150 1.90827 1.50618 1.67784 1.31175 1.46029 1.69712 1.12197 1.08148 1.21522 1.00986 0.79398 0.97161 1.22409 0.98502 0.97192 0.94280 0.89511 1.21378 0.92814 0.90912 0.93358 1.44312 1.11238 1.23360 1.53885 1.19087 0.91307 1.05055 1.19886 0.90276 1.24796 0.97472 0.97824 1.00411 1.69750 1.23674 1.18455 1.45240 0.86047 0.81122 0.78672 0.79505 1.21483 1.21574 1.20662 1.22560 0.85319 1.01504 0.90396 1.23307 0.79937 0.94564 1.00100 0.92089 1.86356 1.20420 1.33566 1.97123 0.88607 0.89016 0.88680 0.85278 0.88020 0.87744 0.87316 0.88358 0.76159 0.90837 0.90941 0.95300 0.95758 0.93594 0.87271 0.95994 0.77524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.33 36.00 0.37 -0.14 16 2 C 0.02 0.18 7.55 -34.63 -0.26 -0.08 16 3 O 0.10 1.09 11.06 18.65 0.21 1.30 16 4 N -0.36 -4.48 11.71 34.78 0.41 -4.07 16 5 C 0.09 1.15 7.08 -79.77 -0.56 0.58 16 6 C -0.09 -1.06 6.31 -91.77 -0.58 -1.63 16 7 C -0.16 -1.51 10.17 -26.69 -0.27 -1.78 16 8 C -0.16 -1.50 10.24 -26.69 -0.27 -1.78 16 9 C -0.24 -3.04 6.24 -102.90 -0.64 -3.69 16 10 C 0.60 8.37 7.60 -12.53 -0.10 8.27 16 11 O -0.53 -9.21 17.11 5.28 0.09 -9.12 16 12 N -0.71 -9.06 5.47 -61.39 -0.34 -9.40 16 13 C 0.13 1.91 5.02 -4.04 -0.02 1.89 16 14 C -0.10 -1.71 2.70 -88.78 -0.24 -1.95 16 15 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 16 C 0.14 2.74 6.75 -3.06 -0.02 2.72 16 17 N -0.60 -14.67 3.39 -170.08 -0.58 -15.24 16 18 C -0.23 -6.05 10.27 -15.06 -0.15 -6.20 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -25.89 10.09 55.49 0.56 -25.33 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.13 2.94 5.62 -2.53 -0.01 2.93 16 27 C 0.08 1.47 3.88 -24.58 -0.10 1.38 16 28 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 29 O -0.57 -9.33 13.47 -35.23 -0.47 -9.81 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.10 0.99 7.97 -51.93 -0.41 0.58 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.40 4.53 8.45 -40.82 -0.35 4.18 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 41 H 0.03 0.56 7.68 -51.93 -0.40 0.16 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.11 2.81 5.87 -51.93 -0.30 2.50 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.38 4.82 9.12 45.56 0.42 5.23 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -32.85 389.17 -8.31 -41.16 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.07 Total: 8.10 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.96 Total: 0.15 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.05 Total: -54.05 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.18 Total: -17.63 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.85 -8.31 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958267742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.309 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds