Wall clock time and date at job start Tue Mar 31 2020 18:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33494 * 126.82674 * 2 1 4 4 N 1.20658 * 113.15788 * 180.30373 * 3 2 1 5 5 C 1.30012 * 112.29787 * 359.74923 * 4 3 2 6 6 C 1.50699 * 127.33275 * 179.97438 * 5 4 3 7 7 C 1.53004 * 117.50070 * 8.75295 * 6 5 4 8 8 C 1.53001 * 117.50070 * 300.09281 * 6 5 4 9 9 C 1.37357 * 126.83555 * 179.89171 * 2 1 3 10 10 C 1.47405 * 128.55837 * 359.97438 * 9 2 1 11 11 O 1.21599 * 120.00468 * 269.67536 * 10 9 2 12 12 N 1.34777 * 119.99369 * 89.68049 * 10 9 2 13 13 C 1.46503 * 119.99727 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47144 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.78092 * 308.23946 * 14 13 12 16 16 C 1.54332 * 110.71977 * 71.47959 * 14 13 12 17 17 N 1.47019 * 107.26809 * 140.55907 * 16 14 13 18 18 C 1.36946 * 125.64345 * 181.10024 * 17 16 14 19 19 H 1.07994 * 119.99874 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99757 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00163 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99863 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47135 * 89.99729 * 22 20 18 24 24 H 1.48498 * 109.46807 * 209.99525 * 22 20 18 25 25 H 1.48499 * 109.46873 * 329.99635 * 22 20 18 26 26 C 1.47418 * 108.70625 * 1.05636 * 17 16 14 27 27 C 1.54907 * 104.83493 * 335.87400 * 26 17 16 28 28 H 1.09002 * 111.00447 * 278.93466 * 27 26 17 29 29 O 1.42903 * 111.00667 * 155.12104 * 27 26 17 30 30 H 1.09001 * 109.47017 * 270.10522 * 1 2 3 31 31 H 1.08994 * 109.47333 * 30.10480 * 1 2 3 32 32 H 1.09002 * 109.46750 * 150.10976 * 1 2 3 33 33 H 1.09005 * 115.55172 * 154.41709 * 6 5 4 34 34 H 1.09003 * 117.49762 * 359.97438 * 7 6 5 35 35 H 1.08994 * 117.50117 * 145.01647 * 7 6 5 36 36 H 1.09008 * 117.49575 * 214.97930 * 8 6 5 37 37 H 1.08994 * 117.49924 * 359.97053 * 8 6 5 38 38 H 0.97002 * 120.00350 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.46656 * 60.00058 * 13 12 10 40 40 H 1.09001 * 109.47103 * 299.99940 * 13 12 10 41 41 H 1.08993 * 109.88239 * 21.13743 * 16 14 13 42 42 H 1.09000 * 109.88233 * 259.97435 * 16 14 13 43 43 H 0.96997 * 120.00312 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.36673 * 217.03608 * 26 17 16 45 45 H 1.08997 * 110.36612 * 94.71882 * 26 17 16 46 46 H 0.96702 * 113.99924 * 64.57918 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3071 1.0686 0.0000 4 7 3.4795 0.7834 -0.0059 5 6 3.6746 -0.5020 -0.0055 6 6 4.9964 -1.2257 -0.0123 7 6 6.2615 -0.3883 0.1861 8 6 5.9362 -0.9695 -1.1922 9 6 2.3305 -1.0993 0.0021 10 6 1.9587 -2.5258 0.0053 11 8 1.8116 -3.1134 1.0596 12 7 1.7821 -3.1786 -1.1605 13 6 1.4132 -4.5964 -1.1574 14 6 1.2756 -5.0907 -2.5988 15 1 0.6146 -4.4387 -3.1698 16 6 2.6590 -5.1935 -3.2752 17 7 2.6535 -6.4126 -4.0969 18 6 3.7035 -6.8764 -4.8437 19 1 4.6360 -6.3319 -4.8609 20 6 3.5693 -8.0465 -5.5785 21 7 2.4331 -8.7104 -5.5570 22 14 5.0014 -8.6787 -6.5977 23 1 5.8348 -9.5875 -5.7702 24 1 4.4819 -9.4189 -7.7756 25 1 5.8259 -7.5324 -7.0575 26 6 1.3308 -7.0536 -3.9830 27 6 0.7637 -6.5551 -2.6304 28 1 1.1726 -7.1300 -1.7996 29 8 -0.6647 -6.5994 -2.6264 30 1 -0.3633 0.0019 1.0277 31 1 -0.3634 0.8890 -0.5154 32 1 -0.3633 -0.8910 -0.5121 33 1 4.9852 -2.2291 0.4136 34 1 6.1377 0.6863 0.3210 35 1 7.0826 -0.8408 0.7420 36 1 6.5435 -1.8043 -1.5423 37 1 5.5982 -0.2779 -1.9638 38 1 1.8992 -2.7098 -2.0016 39 1 0.4635 -4.7235 -0.6378 40 1 2.1861 -5.1718 -0.6478 41 1 3.4385 -5.2614 -2.5164 42 1 2.8285 -4.3215 -3.9068 43 1 2.3394 -9.5282 -6.0701 44 1 1.4346 -8.1387 -3.9740 45 1 0.6855 -6.7403 -4.8036 46 1 -1.0307 -7.4918 -2.6949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958267742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:15 Heat of formation + Delta-G solvation = 2.887015 kcal Electronic energy + Delta-G solvation = -29092.561684 eV Core-core repulsion = 24986.233140 eV Total energy + Delta-G solvation = -4106.328544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.98272 -40.90825 -39.73354 -38.51760 -36.63999 -36.15421 -34.88210 -34.00539 -33.89517 -31.47599 -29.44386 -28.91924 -27.41964 -26.24785 -25.24185 -24.29227 -23.38570 -22.40906 -21.71519 -21.29871 -20.34765 -19.19598 -18.86790 -18.82326 -18.28206 -17.68094 -17.17463 -16.93131 -16.47066 -16.35919 -15.74944 -15.62877 -15.56956 -14.88112 -14.76716 -14.58885 -14.16486 -14.10496 -14.04532 -13.68720 -13.65503 -13.28174 -13.10843 -13.07035 -12.75816 -12.67612 -12.54585 -12.39382 -12.34304 -12.30009 -11.91007 -11.87192 -11.60667 -11.44139 -11.21990 -10.83289 -10.73525 -10.62741 -10.44591 -10.24741 -8.92198 -7.79902 -5.24868 0.24035 0.71297 1.22823 1.48034 1.48895 1.57496 1.73319 2.18040 2.47632 2.74772 2.87724 3.18586 3.21964 3.31021 3.57197 3.67006 3.75221 3.79133 3.85698 3.91828 3.96297 3.98650 4.11120 4.34910 4.43177 4.46633 4.58176 4.59832 4.63209 4.66105 4.68899 4.74482 4.87649 4.88945 4.95795 5.00161 5.07729 5.12694 5.18941 5.31520 5.43501 5.48735 5.74036 6.25068 6.33336 6.88943 6.98619 7.07885 7.13712 7.74146 8.36294 9.21872 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.003042 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.847599 B = 9203.130659 C =10884.378643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.038 3.962 3 O 0.096 5.904 4 N -0.371 5.371 5 C 0.084 3.916 6 C -0.114 4.114 7 C -0.150 4.150 8 C -0.149 4.149 9 C -0.274 4.274 10 C 0.608 3.392 11 O -0.565 6.565 12 N -0.699 5.699 13 C 0.146 3.854 14 C -0.087 4.087 15 H 0.095 0.905 16 C 0.140 3.860 17 N -0.623 5.623 18 C -0.240 4.240 19 H 0.084 0.916 20 C -0.064 4.064 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.270 1.270 26 C 0.132 3.868 27 C 0.098 3.902 28 H 0.068 0.932 29 O -0.568 6.568 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.413 0.587 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.248 0.752 44 H 0.079 0.921 45 H -0.007 1.007 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.564 17.099 10.765 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.025 4.025 3 O 0.036 5.964 4 N -0.077 5.077 5 C -0.078 4.078 6 C -0.133 4.133 7 C -0.187 4.187 8 C -0.187 4.187 9 C -0.281 4.281 10 C 0.393 3.607 11 O -0.444 6.444 12 N -0.350 5.350 13 C 0.022 3.978 14 C -0.106 4.106 15 H 0.113 0.887 16 C 0.015 3.985 17 N -0.350 5.350 18 C -0.368 4.368 19 H 0.101 0.899 20 C -0.256 4.256 21 N -0.597 5.597 22 Si 0.807 3.193 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.195 1.195 26 C 0.007 3.993 27 C 0.037 3.963 28 H 0.085 0.915 29 O -0.375 6.375 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.250 0.750 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.011 0.989 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.783 18.240 11.413 21.590 hybrid contribution 0.395 -1.854 -1.179 2.232 sum -1.389 16.386 10.234 19.369 Atomic orbital electron populations 1.20736 0.80255 1.06680 1.06101 1.25234 0.97267 0.84020 0.96014 1.84519 1.10908 1.33103 1.67879 1.73532 0.96472 1.16385 1.21360 1.23974 0.94857 0.88664 1.00264 1.20362 0.85173 0.99836 1.07958 1.23100 0.96299 0.99702 0.99623 1.23124 1.00416 1.03871 0.91280 1.21748 0.93336 0.94874 1.18176 1.16895 0.75957 0.84249 0.83564 1.90806 1.52400 1.68767 1.32462 1.45880 1.69095 1.11506 1.08484 1.21264 1.01016 0.80098 0.95385 1.22231 0.96685 0.96358 0.95314 0.88661 1.21525 0.94712 0.89267 0.93019 1.44590 1.11078 1.25171 1.54192 1.19458 0.92217 1.05186 1.19980 0.89861 1.25596 0.99832 0.98307 1.01910 1.69991 1.25292 1.18547 1.45915 0.85074 0.78410 0.78128 0.77697 1.21206 1.22130 1.19520 1.22340 0.84913 0.99799 0.92295 1.22968 0.80775 0.95430 0.97123 0.91460 1.86331 1.19059 1.35242 1.96848 0.87292 0.86324 0.88365 0.85932 0.88446 0.86020 0.86354 0.88676 0.75022 0.90319 0.91786 0.94935 0.94879 0.94239 0.90315 0.98908 0.75614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.33 71.24 0.74 -0.09 16 2 C 0.04 0.72 7.55 25.48 0.19 0.91 16 3 O 0.10 2.03 11.06 76.98 0.85 2.88 16 4 N -0.37 -9.01 11.71 -44.80 -0.52 -9.54 16 5 C 0.08 2.05 7.08 45.15 0.32 2.37 16 6 C -0.11 -2.48 6.31 -11.54 -0.07 -2.56 16 7 C -0.15 -2.63 10.17 30.62 0.31 -2.32 16 8 C -0.15 -2.72 10.24 30.62 0.31 -2.41 16 9 C -0.27 -6.52 6.24 -18.75 -0.12 -6.64 16 10 C 0.61 16.33 7.60 86.66 0.66 16.99 16 11 O -0.57 -19.33 17.11 -4.03 -0.07 -19.40 16 12 N -0.70 -16.67 5.47 -466.40 -2.55 -19.22 16 13 C 0.15 3.96 5.02 86.38 0.43 4.39 16 14 C -0.09 -2.70 2.70 -9.60 -0.03 -2.73 16 15 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 16 C 0.14 5.26 6.75 86.73 0.59 5.85 16 17 N -0.62 -30.53 3.39 -692.01 -2.35 -32.88 16 18 C -0.24 -12.92 10.27 84.03 0.86 -12.06 16 19 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 20 C -0.06 -3.49 5.49 84.86 0.47 -3.03 16 21 N -0.95 -54.44 10.09 21.65 0.22 -54.22 16 22 Si 0.98 44.24 29.55 68.60 2.03 46.27 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 C 0.13 6.19 5.62 86.86 0.49 6.67 16 27 C 0.10 3.45 3.88 31.99 0.12 3.57 16 28 H 0.07 2.32 8.05 -2.39 -0.02 2.31 16 29 O -0.57 -17.64 13.47 -148.98 -2.01 -19.65 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 1.00 8.11 -2.39 -0.02 0.99 16 33 H 0.12 2.78 8.14 -2.38 -0.02 2.76 16 34 H 0.10 1.81 7.97 -2.39 -0.02 1.79 16 35 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.41 8.44 8.45 -92.71 -0.78 7.66 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.06 1.89 7.93 -2.39 -0.02 1.87 16 41 H 0.03 1.22 7.68 -2.39 -0.02 1.20 16 42 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.08 4.18 5.87 -2.39 -0.01 4.16 16 45 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.39 9.48 9.12 -74.06 -0.68 8.80 16 Total: -1.00 -71.45 389.17 0.44 -71.01 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -0.44 Total: 25.81 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 5.28 Total: 8.92 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -5.21 Total: -115.85 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.22 Total: -36.17 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -71.45 0.44 -71.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958267742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.900 kcal (2) G-P(sol) polarization free energy of solvation -71.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds