Wall clock time and date at job start Tue Mar 31 2020 18:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33495 * 126.82810 * 2 1 4 4 N 1.20662 * 113.15362 * 179.82009 * 3 2 1 5 5 C 1.30019 * 112.30105 * 0.46580 * 4 3 2 6 6 C 1.50703 * 127.33447 * 179.68952 * 5 4 3 7 7 C 1.53005 * 117.49543 * 8.66404 * 6 5 4 8 8 C 1.52994 * 117.49736 * 300.04644 * 6 5 4 9 9 C 1.37361 * 126.82864 * 180.31925 * 2 1 3 10 10 C 1.47397 * 128.56337 * 359.97438 * 9 2 1 11 11 O 1.21609 * 120.00377 * 89.97836 * 10 9 2 12 12 N 1.34780 * 119.99909 * 269.97591 * 10 9 2 13 13 C 1.46502 * 120.00105 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47445 * 180.02562 * 13 12 10 15 15 H 1.09002 * 110.64059 * 54.29869 * 14 13 12 16 16 C 1.54327 * 110.71842 * 291.16265 * 14 13 12 17 17 N 1.47022 * 107.26835 * 219.44102 * 16 14 13 18 18 C 1.36935 * 125.64993 * 178.97794 * 17 16 14 19 19 H 1.08004 * 120.00050 * 359.97438 * 18 17 16 20 20 C 1.38815 * 120.00505 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99500 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00441 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46807 * 59.99844 * 22 20 18 24 24 H 1.48497 * 109.46943 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47050 * 300.00023 * 22 20 18 26 26 C 1.47429 * 108.70632 * 358.94075 * 17 16 14 27 27 C 1.55124 * 104.93857 * 24.00090 * 26 17 16 28 28 H 1.09000 * 110.93354 * 81.21897 * 27 26 17 29 29 O 1.42899 * 111.16272 * 205.12920 * 27 26 17 30 30 H 1.09002 * 109.47152 * 269.68345 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.68445 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.68426 * 1 2 3 33 33 H 1.08998 * 115.54718 * 154.36746 * 6 5 4 34 34 H 1.08993 * 117.50028 * 0.02562 * 7 6 5 35 35 H 1.09000 * 117.49404 * 145.02111 * 7 6 5 36 36 H 1.09000 * 117.49899 * 214.98086 * 8 6 5 37 37 H 1.09004 * 117.50160 * 359.97438 * 8 6 5 38 38 H 0.96994 * 120.00260 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.47461 * 300.00706 * 13 12 10 40 40 H 1.09006 * 109.46526 * 60.00168 * 13 12 10 41 41 H 1.08999 * 109.88458 * 338.85674 * 16 14 13 42 42 H 1.08996 * 109.88666 * 100.02608 * 16 14 13 43 43 H 0.97004 * 120.00176 * 180.02562 * 21 20 18 44 44 H 1.08994 * 110.36981 * 142.96420 * 26 17 16 45 45 H 1.09004 * 110.36519 * 265.18118 * 26 17 16 46 46 H 0.96699 * 114.00275 * 292.17661 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7833 0.0035 5 6 3.6747 -0.5022 -0.0034 6 6 4.9965 -1.2260 -0.0084 7 6 6.2607 -0.3895 0.1993 8 6 5.9413 -0.9632 -1.1826 9 6 2.3304 -1.0995 -0.0061 10 6 1.9587 -2.5258 -0.0136 11 8 1.8045 -3.1085 -1.0697 12 7 1.7896 -3.1842 1.1503 13 6 1.4196 -4.6017 1.1429 14 6 1.2915 -5.1029 2.5828 15 1 0.5997 -4.4776 3.1472 16 6 2.6725 -5.1473 3.2703 17 7 2.7124 -6.3664 4.0911 18 6 3.7746 -6.7850 4.8472 19 1 4.6827 -6.2010 4.8728 20 6 3.6842 -7.9600 5.5808 21 7 2.5776 -8.6720 5.5492 22 14 5.1334 -8.5315 6.6116 23 1 5.4559 -7.4979 7.6280 24 1 4.7851 -9.8044 7.2925 25 1 6.3113 -8.7467 5.7333 26 6 1.4191 -7.0630 3.9661 27 6 0.8375 -6.5862 2.6094 28 1 1.2745 -7.1435 1.7809 29 8 -0.5879 -6.6859 2.5956 30 1 -0.3633 -0.0057 1.0277 31 1 -0.3633 -0.8872 -0.5187 32 1 -0.3633 0.8928 -0.5089 33 1 4.9833 -2.2316 0.4118 34 1 6.1363 0.6841 0.3399 35 1 7.0795 -0.8449 0.7563 36 1 6.5501 -1.7959 -1.5349 37 1 5.6068 -0.2671 -1.9518 38 1 1.9122 -2.7194 1.9927 39 1 0.4662 -4.7257 0.6293 40 1 2.1885 -5.1751 0.6252 41 1 3.4603 -5.1811 2.5178 42 1 2.7997 -4.2695 3.9038 43 1 2.5142 -9.4929 6.0620 44 1 1.5691 -8.1426 3.9572 45 1 0.7551 -6.7797 4.7828 46 1 -0.9189 -7.5944 2.6114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958267743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:20 Heat of formation + Delta-G solvation = 26.183299 kcal Electronic energy + Delta-G solvation = -29035.495317 eV Core-core repulsion = 24930.176976 eV Total energy + Delta-G solvation = -4105.318341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.08599 -39.71917 -38.23117 -37.71671 -35.23111 -34.70487 -34.00764 -33.07841 -32.25667 -29.87946 -28.34170 -27.58658 -25.95152 -25.00700 -24.13805 -23.06279 -22.63094 -20.98796 -20.31696 -19.92903 -19.43477 -18.14323 -17.91350 -17.08991 -16.99105 -16.58798 -15.93460 -15.62189 -15.38047 -14.97835 -14.77310 -14.30478 -13.97793 -13.78718 -13.60707 -13.57627 -13.05827 -12.99773 -12.85355 -12.47096 -12.28946 -12.01771 -11.88211 -11.78655 -11.61121 -11.50523 -11.30360 -11.03885 -10.84354 -10.71659 -10.68125 -10.34948 -10.13181 -9.92771 -9.77017 -9.73114 -9.59557 -9.22494 -9.09398 -8.75172 -6.96417 -5.76086 -3.18849 1.07545 1.62568 2.30254 2.61053 3.16313 3.34698 3.39119 3.40269 3.54843 3.73223 4.03261 4.36647 4.52389 4.58876 4.63059 4.66895 4.73639 4.81406 4.96850 5.03470 5.10776 5.16162 5.24913 5.37286 5.39004 5.43111 5.45940 5.56423 5.60851 5.67100 5.79845 5.84659 5.86825 5.95528 5.98038 6.13200 6.27431 6.37179 6.52200 6.74128 7.30022 7.38517 7.49085 7.69355 8.00218 8.05643 8.10243 8.23811 9.09917 9.70759 10.33574 11.27853 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.002991 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.568508 B = 9358.294100 C =10937.376329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.017 3.983 3 O 0.096 5.904 4 N -0.355 5.355 5 C 0.091 3.909 6 C -0.094 4.094 7 C -0.160 4.160 8 C -0.157 4.157 9 C -0.244 4.244 10 C 0.598 3.402 11 O -0.527 6.527 12 N -0.711 5.711 13 C 0.132 3.868 14 C -0.105 4.105 15 H 0.087 0.913 16 C 0.141 3.859 17 N -0.600 5.600 18 C -0.227 4.227 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.917 3.083 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.129 3.871 27 C 0.081 3.919 28 H 0.061 0.939 29 O -0.569 6.569 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.404 0.596 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.029 0.971 42 H 0.024 0.976 43 H 0.254 0.746 44 H 0.109 0.891 45 H 0.022 0.978 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 15.406 -11.121 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 O 0.035 5.965 4 N -0.061 5.061 5 C -0.071 4.071 6 C -0.113 4.113 7 C -0.197 4.197 8 C -0.195 4.195 9 C -0.251 4.251 10 C 0.382 3.618 11 O -0.403 6.403 12 N -0.362 5.362 13 C 0.009 3.991 14 C -0.124 4.124 15 H 0.105 0.895 16 C 0.015 3.985 17 N -0.328 5.328 18 C -0.355 4.355 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.747 3.253 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.211 1.211 26 C 0.003 3.997 27 C 0.021 3.979 28 H 0.079 0.921 29 O -0.374 6.374 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.148 0.852 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.238 0.762 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.127 0.873 45 H 0.040 0.960 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.994 16.509 -11.736 20.354 hybrid contribution 0.454 -1.397 1.084 1.825 sum -1.539 15.112 -10.652 18.553 Atomic orbital electron populations 1.20491 0.83058 1.05321 1.04823 1.24613 0.96011 0.85082 0.98911 1.84539 1.11079 1.32863 1.68027 1.73547 0.95813 1.16350 1.20368 1.23728 0.94265 0.88523 1.00545 1.20290 0.84829 0.99799 1.06340 1.23040 0.97036 1.00174 0.99469 1.23042 1.01193 1.03636 0.91615 1.21854 0.92688 0.95271 1.15329 1.16831 0.77002 0.83826 0.84162 1.90830 1.50485 1.68015 1.30973 1.46032 1.69758 1.12204 1.08177 1.21518 1.00978 0.79388 0.97185 1.22405 0.98681 0.97044 0.94271 0.89518 1.21370 0.92783 0.91029 0.93305 1.44298 1.12924 1.22012 1.53530 1.19040 0.92087 1.04632 1.19695 0.90336 1.24799 0.97671 0.97616 1.00380 1.69747 1.25480 1.16763 1.45123 0.86121 0.81372 0.77895 0.79924 1.21122 1.21485 1.21054 1.22579 0.85738 1.01024 0.90355 1.23330 0.80100 0.94378 1.00106 0.92092 1.86360 1.21141 1.32381 1.97496 0.88503 0.88639 0.89064 0.85182 0.87977 0.87590 0.87529 0.88520 0.76154 0.90847 0.90966 0.95337 0.95777 0.93535 0.87295 0.96013 0.77558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.33 36.01 0.37 -0.15 16 2 C 0.02 0.18 7.55 -34.63 -0.26 -0.08 16 3 O 0.10 1.09 11.06 18.65 0.21 1.30 16 4 N -0.36 -4.49 11.71 34.78 0.41 -4.08 16 5 C 0.09 1.15 7.08 -79.76 -0.56 0.58 16 6 C -0.09 -1.05 6.32 -91.77 -0.58 -1.63 16 7 C -0.16 -1.51 10.16 -26.73 -0.27 -1.78 16 8 C -0.16 -1.51 10.23 -26.74 -0.27 -1.79 16 9 C -0.24 -3.05 6.24 -102.89 -0.64 -3.69 16 10 C 0.60 8.37 7.60 -12.53 -0.10 8.27 16 11 O -0.53 -9.18 17.11 5.27 0.09 -9.09 16 12 N -0.71 -9.08 5.43 -61.39 -0.33 -9.42 16 13 C 0.13 1.91 5.00 -4.04 -0.02 1.89 16 14 C -0.10 -1.72 2.71 -88.79 -0.24 -1.96 16 15 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 16 C 0.14 2.74 6.64 -3.06 -0.02 2.72 16 17 N -0.60 -14.70 3.40 -169.93 -0.58 -15.28 16 18 C -0.23 -6.10 10.27 -15.06 -0.15 -6.25 16 19 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -25.95 10.09 55.49 0.56 -25.39 16 22 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.13 2.97 5.63 -2.41 -0.01 2.96 16 27 C 0.08 1.47 3.89 -24.47 -0.10 1.38 16 28 H 0.06 1.08 8.05 -51.93 -0.42 0.67 16 29 O -0.57 -9.32 13.48 -35.23 -0.47 -9.79 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.10 1.00 7.97 -51.93 -0.41 0.59 16 35 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.40 4.54 8.39 -40.82 -0.34 4.20 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.12 8.01 -51.93 -0.42 0.70 16 41 H 0.03 0.55 7.73 -51.93 -0.40 0.15 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.11 2.81 5.87 -51.93 -0.31 2.50 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.38 4.77 9.12 45.56 0.42 5.19 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -32.97 389.09 -8.31 -41.29 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.08 Total: 8.06 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.96 Total: 0.12 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.06 Total: -54.17 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.18 Total: -17.58 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.97 -8.31 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958267743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.472 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds