Wall clock time and date at job start Tue Mar 31 2020 19:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30014 * 127.32877 * 2 1 4 4 O 1.20664 * 112.30124 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15343 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.83110 * 180.02562 * 5 4 3 7 7 C 1.53000 * 117.49616 * 8.72034 * 6 5 4 8 8 C 1.52998 * 117.49694 * 300.06086 * 6 5 4 9 9 C 1.37364 * 106.34259 * 0.02562 * 5 4 3 10 10 C 1.47402 * 128.56487 * 179.97438 * 9 5 4 11 11 O 1.21606 * 119.99601 * 270.00319 * 10 9 5 12 12 N 1.34775 * 120.00261 * 89.99949 * 10 9 5 13 13 C 1.46497 * 119.99944 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47199 * 180.02562 * 13 12 10 15 15 H 1.08997 * 110.64053 * 56.68206 * 14 13 12 16 16 C 1.54329 * 110.71656 * 293.54211 * 14 13 12 17 17 N 1.47021 * 107.26711 * 219.44383 * 16 14 13 18 18 C 1.36940 * 125.64604 * 178.90406 * 17 16 14 19 19 H 1.08001 * 119.99837 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00010 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00298 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47434 * 89.99882 * 22 20 18 24 24 H 1.48498 * 109.47254 * 210.00308 * 22 20 18 25 25 H 1.48501 * 109.46948 * 330.00156 * 22 20 18 26 26 C 1.47419 * 108.70513 * 358.94057 * 17 16 14 27 27 C 1.54908 * 104.83346 * 24.13017 * 26 17 16 28 28 H 1.09003 * 111.00517 * 204.91051 * 27 26 17 29 29 O 1.42899 * 111.00291 * 81.06300 * 27 26 17 30 30 H 1.09001 * 109.46662 * 90.03224 * 1 2 3 31 31 H 1.09004 * 109.46889 * 210.02532 * 1 2 3 32 32 H 1.08997 * 109.47836 * 330.02980 * 1 2 3 33 33 H 1.09004 * 115.55471 * 154.38708 * 6 5 4 34 34 H 1.09004 * 117.49898 * 359.97438 * 7 6 5 35 35 H 1.09001 * 117.50334 * 145.02371 * 7 6 5 36 36 H 1.08999 * 117.49969 * 214.98083 * 8 6 5 37 37 H 1.09002 * 117.50117 * 359.97438 * 8 6 5 38 38 H 0.97001 * 119.99991 * 359.97438 * 12 10 9 39 39 H 1.09009 * 109.46886 * 299.99488 * 13 12 10 40 40 H 1.09000 * 109.47819 * 59.99598 * 13 12 10 41 41 H 1.09000 * 109.88330 * 338.85928 * 16 14 13 42 42 H 1.08995 * 109.87867 * 99.87394 * 16 14 13 43 43 H 0.96999 * 120.00387 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.36903 * 142.96879 * 26 17 16 45 45 H 1.08995 * 110.36975 * 265.17901 * 26 17 16 46 46 H 0.96700 * 113.99800 * 67.80938 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7210 0.0005 5 6 3.6494 -0.6005 0.0015 6 6 4.9712 -1.3244 0.0028 7 6 6.2350 -0.4869 0.2089 8 6 5.9182 -1.0681 -1.1713 9 6 2.3992 -1.1695 0.0010 10 6 2.0402 -2.5991 0.0011 11 8 1.8927 -3.1890 -1.0520 12 7 1.8755 -3.2525 1.1684 13 6 1.5192 -4.6735 1.1684 14 6 1.3935 -5.1677 2.6110 15 1 0.6634 -4.5721 3.1589 16 6 2.7643 -5.1385 3.3195 17 7 2.8509 -6.3470 4.1523 18 6 3.9210 -6.7073 4.9270 19 1 4.7992 -6.0795 4.9603 20 6 3.8766 -7.8787 5.6704 21 7 2.8061 -8.6435 5.6302 22 14 5.3361 -8.3698 6.7278 23 1 5.1783 -7.7943 8.0876 24 1 5.4035 -9.8503 6.8216 25 1 6.5869 -7.8552 6.1147 26 6 1.5953 -7.1071 4.0146 27 6 1.0168 -6.6724 2.6448 28 1 -0.0648 -6.8052 2.6176 29 8 1.6449 -7.3819 1.5752 30 1 -0.3633 -0.0006 -1.0277 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3635 0.8902 0.5133 33 1 4.9575 -2.3277 0.4286 34 1 6.1104 0.5877 0.3431 35 1 7.0528 -0.9394 0.7698 36 1 6.5275 -1.9028 -1.5178 37 1 5.5849 -0.3764 -1.9449 38 1 1.9935 -2.7820 2.0084 39 1 0.5678 -4.8096 0.6540 40 1 2.2944 -5.2425 0.6553 41 1 3.5643 -5.1404 2.5792 42 1 2.8396 -4.2487 3.9443 43 1 2.7750 -9.4619 6.1499 44 1 1.7978 -8.1781 4.0182 45 1 0.9057 -6.8495 4.8184 46 1 1.4388 -8.3265 1.5554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958277545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:59 Heat of formation + Delta-G solvation = 29.315686 kcal Electronic energy + Delta-G solvation = -29242.577553 eV Core-core repulsion = 25137.395043 eV Total energy + Delta-G solvation = -4105.182511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.07206 -39.67139 -38.26179 -37.66841 -34.93553 -34.76422 -34.54991 -32.33140 -31.82379 -29.74612 -29.01528 -27.80903 -25.92463 -24.75519 -23.84168 -23.14978 -22.71414 -20.97117 -20.27133 -19.86610 -19.51330 -18.11741 -17.85075 -17.34975 -16.82234 -16.32590 -16.12801 -15.75657 -15.00822 -14.87182 -14.57129 -14.21336 -13.85340 -13.74452 -13.62971 -13.55907 -13.36225 -13.10000 -12.72729 -12.41143 -12.29876 -12.00069 -11.91651 -11.69659 -11.44480 -11.38903 -11.28892 -10.84943 -10.78037 -10.69992 -10.47631 -10.39645 -10.13049 -10.07197 -9.90955 -9.85971 -9.38452 -9.15014 -9.01641 -8.71698 -6.88440 -5.72610 -3.12805 1.04479 1.69963 2.35807 2.54944 3.22599 3.36148 3.41488 3.43211 3.44034 3.85684 3.95460 4.37165 4.42768 4.49255 4.54750 4.67226 4.76689 4.99226 5.08317 5.16867 5.20588 5.26324 5.30683 5.32314 5.35522 5.37642 5.47474 5.55389 5.57050 5.66915 5.75231 5.77405 5.85083 5.99261 6.07404 6.27878 6.37317 6.41646 6.58022 6.79753 7.24306 7.44171 7.53617 7.71607 8.00147 8.11609 8.19732 8.33406 9.14817 9.76299 10.39959 11.32234 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.002986 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.573277 B = 9374.704489 C =10553.002997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.055 3.945 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.054 3.946 6 C -0.096 4.096 7 C -0.161 4.161 8 C -0.155 4.155 9 C -0.244 4.244 10 C 0.598 3.402 11 O -0.525 6.525 12 N -0.714 5.714 13 C 0.139 3.861 14 C -0.107 4.107 15 H 0.086 0.914 16 C 0.145 3.855 17 N -0.597 5.597 18 C -0.219 4.219 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.925 5.925 22 Si 0.915 3.085 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.126 3.874 27 C 0.083 3.917 28 H 0.055 0.945 29 O -0.558 6.558 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.142 0.858 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.402 0.598 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.028 0.972 42 H 0.018 0.982 43 H 0.252 0.748 44 H 0.112 0.888 45 H 0.019 0.981 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.900 14.782 -10.774 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.009 4.009 6 C -0.115 4.115 7 C -0.198 4.198 8 C -0.192 4.192 9 C -0.251 4.251 10 C 0.381 3.619 11 O -0.402 6.402 12 N -0.365 5.365 13 C 0.016 3.984 14 C -0.126 4.126 15 H 0.104 0.896 16 C 0.019 3.981 17 N -0.323 5.323 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.574 5.574 22 Si 0.746 3.254 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.001 3.999 27 C 0.022 3.978 28 H 0.073 0.927 29 O -0.363 6.363 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.237 0.763 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.046 0.954 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.130 0.870 45 H 0.037 0.963 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.883 16.079 -11.514 19.866 hybrid contribution 0.338 -1.339 1.280 1.883 sum -1.545 14.740 -10.234 18.011 Atomic orbital electron populations 1.20227 0.85073 1.04182 1.03972 1.24730 0.98568 0.86486 1.00908 1.73619 0.89034 1.23242 1.20418 1.84495 1.21531 1.22401 1.68160 1.23547 0.95579 0.83368 0.98452 1.20564 0.83981 0.99688 1.07284 1.23126 0.96877 1.00192 0.99562 1.23132 1.00573 1.03907 0.91636 1.21867 0.92460 0.95470 1.15312 1.16814 0.77180 0.83707 0.84199 1.90830 1.50198 1.67833 1.31292 1.46110 1.70112 1.12224 1.08018 1.21324 1.01502 0.78577 0.96963 1.22515 0.99582 0.95900 0.94598 0.89580 1.21297 0.93259 0.90693 0.92869 1.44330 1.15128 1.21056 1.51766 1.19077 0.93407 1.04287 1.18005 0.90490 1.24758 0.97891 0.97465 1.00535 1.69742 1.27510 1.15211 1.44952 0.86058 0.81589 0.77594 0.80176 1.21652 1.21629 1.20682 1.22589 0.86633 1.01022 0.89692 1.23184 0.94250 0.90383 0.89956 0.92738 1.86384 1.74913 1.24622 1.50380 0.89572 0.89722 0.89868 0.84044 0.87641 0.87140 0.87106 0.88068 0.76338 0.91526 0.89807 0.95436 0.96377 0.93726 0.87037 0.96298 0.77755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.49 36.01 0.38 -0.31 16 2 C 0.06 0.66 7.59 -79.77 -0.61 0.06 16 3 N -0.36 -4.54 12.01 34.78 0.42 -4.12 16 4 O 0.10 1.15 10.86 18.66 0.20 1.35 16 5 C 0.05 0.63 7.00 -34.63 -0.24 0.39 16 6 C -0.10 -0.94 6.15 -91.77 -0.56 -1.51 16 7 C -0.16 -1.21 10.19 -26.69 -0.27 -1.48 16 8 C -0.16 -1.25 10.24 -26.69 -0.27 -1.52 16 9 C -0.24 -3.15 6.24 -102.89 -0.64 -3.79 16 10 C 0.60 8.65 7.63 -12.53 -0.10 8.55 16 11 O -0.53 -9.49 17.11 5.27 0.09 -9.40 16 12 N -0.71 -9.39 5.40 -61.39 -0.33 -9.72 16 13 C 0.14 2.08 4.59 -4.04 -0.02 2.07 16 14 C -0.11 -1.72 2.95 -88.78 -0.26 -1.98 16 15 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 16 C 0.14 2.87 6.52 -3.06 -0.02 2.85 16 17 N -0.60 -14.72 3.39 -170.08 -0.58 -15.30 16 18 C -0.22 -5.98 10.27 -15.06 -0.15 -6.13 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.93 -26.06 10.09 55.49 0.56 -25.50 16 22 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.13 2.87 5.62 -2.53 -0.01 2.85 16 27 C 0.08 1.46 4.17 -24.59 -0.10 1.36 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 O -0.56 -9.91 12.22 -35.23 -0.43 -10.34 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.14 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.11 0.75 8.02 -51.93 -0.42 0.33 16 35 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.62 8.31 -40.82 -0.34 4.28 16 39 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 40 H 0.08 1.47 7.44 -51.93 -0.39 1.09 16 41 H 0.03 0.57 7.77 -51.93 -0.40 0.17 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.11 2.86 5.87 -51.93 -0.31 2.55 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.38 5.44 9.12 45.56 0.42 5.85 16 LS Contribution 387.45 15.07 5.84 5.84 Total: -1.00 -33.32 387.45 -8.29 -41.61 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.05 Total: 7.95 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.98 Total: 1.01 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.07 Total: -54.64 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.14 Total: -18.39 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.32 -8.29 -41.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958277545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.928 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds