Wall clock time and date at job start Tue Mar 31 2020 19:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30014 * 127.32877 * 2 1 4 4 O 1.20664 * 112.30124 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15343 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.83110 * 180.02562 * 5 4 3 7 7 C 1.53000 * 117.49616 * 8.72034 * 6 5 4 8 8 C 1.52998 * 117.49694 * 300.06086 * 6 5 4 9 9 C 1.37364 * 106.34259 * 0.02562 * 5 4 3 10 10 C 1.47402 * 128.56487 * 179.97438 * 9 5 4 11 11 O 1.21606 * 119.99601 * 270.00319 * 10 9 5 12 12 N 1.34775 * 120.00261 * 89.99949 * 10 9 5 13 13 C 1.46497 * 119.99944 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47199 * 180.02562 * 13 12 10 15 15 H 1.08997 * 110.64053 * 56.68206 * 14 13 12 16 16 C 1.54329 * 110.71656 * 293.54211 * 14 13 12 17 17 N 1.47021 * 107.26711 * 219.44383 * 16 14 13 18 18 C 1.36940 * 125.64604 * 178.90406 * 17 16 14 19 19 H 1.08001 * 119.99837 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00010 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00298 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47434 * 89.99882 * 22 20 18 24 24 H 1.48498 * 109.47254 * 210.00308 * 22 20 18 25 25 H 1.48501 * 109.46948 * 330.00156 * 22 20 18 26 26 C 1.47419 * 108.70513 * 358.94057 * 17 16 14 27 27 C 1.54908 * 104.83346 * 24.13017 * 26 17 16 28 28 H 1.09003 * 111.00517 * 204.91051 * 27 26 17 29 29 O 1.42899 * 111.00291 * 81.06300 * 27 26 17 30 30 H 1.09001 * 109.46662 * 90.03224 * 1 2 3 31 31 H 1.09004 * 109.46889 * 210.02532 * 1 2 3 32 32 H 1.08997 * 109.47836 * 330.02980 * 1 2 3 33 33 H 1.09004 * 115.55471 * 154.38708 * 6 5 4 34 34 H 1.09004 * 117.49898 * 359.97438 * 7 6 5 35 35 H 1.09001 * 117.50334 * 145.02371 * 7 6 5 36 36 H 1.08999 * 117.49969 * 214.98083 * 8 6 5 37 37 H 1.09002 * 117.50117 * 359.97438 * 8 6 5 38 38 H 0.97001 * 119.99991 * 359.97438 * 12 10 9 39 39 H 1.09009 * 109.46886 * 299.99488 * 13 12 10 40 40 H 1.09000 * 109.47819 * 59.99598 * 13 12 10 41 41 H 1.09000 * 109.88330 * 338.85928 * 16 14 13 42 42 H 1.08995 * 109.87867 * 99.87394 * 16 14 13 43 43 H 0.96999 * 120.00387 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.36903 * 142.96879 * 26 17 16 45 45 H 1.08995 * 110.36975 * 265.17901 * 26 17 16 46 46 H 0.96700 * 113.99800 * 67.80938 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7210 0.0005 5 6 3.6494 -0.6005 0.0015 6 6 4.9712 -1.3244 0.0028 7 6 6.2350 -0.4869 0.2089 8 6 5.9182 -1.0681 -1.1713 9 6 2.3992 -1.1695 0.0010 10 6 2.0402 -2.5991 0.0011 11 8 1.8927 -3.1890 -1.0520 12 7 1.8755 -3.2525 1.1684 13 6 1.5192 -4.6735 1.1684 14 6 1.3935 -5.1677 2.6110 15 1 0.6634 -4.5721 3.1589 16 6 2.7643 -5.1385 3.3195 17 7 2.8509 -6.3470 4.1523 18 6 3.9210 -6.7073 4.9270 19 1 4.7992 -6.0795 4.9603 20 6 3.8766 -7.8787 5.6704 21 7 2.8061 -8.6435 5.6302 22 14 5.3361 -8.3698 6.7278 23 1 5.1783 -7.7943 8.0876 24 1 5.4035 -9.8503 6.8216 25 1 6.5869 -7.8552 6.1147 26 6 1.5953 -7.1071 4.0146 27 6 1.0168 -6.6724 2.6448 28 1 -0.0648 -6.8052 2.6176 29 8 1.6449 -7.3819 1.5752 30 1 -0.3633 -0.0006 -1.0277 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3635 0.8902 0.5133 33 1 4.9575 -2.3277 0.4286 34 1 6.1104 0.5877 0.3431 35 1 7.0528 -0.9394 0.7698 36 1 6.5275 -1.9028 -1.5178 37 1 5.5849 -0.3764 -1.9449 38 1 1.9935 -2.7820 2.0084 39 1 0.5678 -4.8096 0.6540 40 1 2.2944 -5.2425 0.6553 41 1 3.5643 -5.1404 2.5792 42 1 2.8396 -4.2487 3.9443 43 1 2.7750 -9.4619 6.1499 44 1 1.7978 -8.1781 4.0182 45 1 0.9057 -6.8495 4.8184 46 1 1.4388 -8.3265 1.5554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958277545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:58 Heat of formation + Delta-G solvation = 5.722961 kcal Electronic energy + Delta-G solvation = -29243.600611 eV Core-core repulsion = 25137.395043 eV Total energy + Delta-G solvation = -4106.205568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.99242 -40.90013 -39.74321 -38.37728 -36.31841 -36.12337 -35.66694 -33.97349 -32.87707 -31.34840 -29.82409 -29.42202 -27.45173 -26.17185 -24.75966 -24.41234 -23.34540 -22.36256 -21.67030 -21.16152 -20.53125 -19.23806 -19.01877 -18.80895 -18.04433 -17.57298 -17.10714 -16.86003 -16.80565 -16.18498 -15.75740 -15.60701 -15.42719 -14.79292 -14.69884 -14.41117 -14.33745 -14.31345 -13.97916 -13.87103 -13.65237 -13.16397 -13.10353 -13.01739 -12.65915 -12.56604 -12.45903 -12.31711 -12.20339 -12.03265 -11.86866 -11.82230 -11.74506 -11.47135 -11.26011 -11.00943 -10.79716 -10.64544 -10.26818 -10.21596 -8.84359 -7.77673 -5.19768 0.13342 0.78241 1.24210 1.47442 1.48288 1.56890 1.60960 2.16025 2.49784 2.74826 3.03493 3.10777 3.29277 3.37007 3.56541 3.61092 3.67670 3.83336 3.91092 3.93475 3.97043 4.02670 4.14382 4.38265 4.44203 4.49045 4.56395 4.61331 4.65294 4.68984 4.71905 4.83860 4.89014 4.91804 5.01069 5.01689 5.06803 5.16996 5.25179 5.35426 5.41477 5.52402 5.78988 6.30076 6.35030 6.97013 7.01492 7.08851 7.12506 7.79497 8.41909 9.24318 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.002986 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.573277 B = 9374.704489 C =10553.002997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.058 3.942 3 N -0.373 5.373 4 O 0.092 5.908 5 C 0.065 3.935 6 C -0.121 4.121 7 C -0.143 4.143 8 C -0.151 4.151 9 C -0.269 4.269 10 C 0.607 3.393 11 O -0.565 6.565 12 N -0.702 5.702 13 C 0.154 3.846 14 C -0.091 4.091 15 H 0.114 0.886 16 C 0.142 3.858 17 N -0.620 5.620 18 C -0.236 4.236 19 H 0.077 0.923 20 C -0.064 4.064 21 N -0.947 5.947 22 Si 0.976 3.024 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.126 3.874 27 C 0.095 3.905 28 H 0.090 0.910 29 O -0.569 6.569 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.413 0.587 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.016 0.984 42 H 0.030 0.970 43 H 0.247 0.753 44 H 0.079 0.921 45 H 0.001 0.999 46 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 16.125 -11.046 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 N -0.082 5.082 4 O 0.033 5.967 5 C 0.002 3.998 6 C -0.140 4.140 7 C -0.180 4.180 8 C -0.188 4.188 9 C -0.276 4.276 10 C 0.392 3.608 11 O -0.443 6.443 12 N -0.352 5.352 13 C 0.031 3.969 14 C -0.110 4.110 15 H 0.132 0.868 16 C 0.017 3.983 17 N -0.346 5.346 18 C -0.365 4.365 19 H 0.095 0.905 20 C -0.257 4.257 21 N -0.597 5.597 22 Si 0.805 3.195 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.197 1.197 26 C 0.001 3.999 27 C 0.034 3.966 28 H 0.108 0.892 29 O -0.376 6.376 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.249 0.751 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.097 0.903 45 H 0.019 0.981 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -1.897 17.452 -11.779 21.140 hybrid contribution 0.388 -1.746 1.356 2.244 sum -1.509 15.706 -10.423 18.910 Atomic orbital electron populations 1.20391 0.83076 1.05319 1.04825 1.25195 0.99824 0.85782 0.99656 1.73608 0.89289 1.23671 1.21595 1.84480 1.21478 1.22407 1.68302 1.23869 0.96054 0.83258 0.96653 1.20669 0.84123 0.99779 1.09474 1.23233 0.95512 1.00258 0.99010 1.23241 0.99574 1.04284 0.91666 1.21771 0.93396 0.94846 1.17604 1.16896 0.76155 0.84112 0.83663 1.90808 1.52064 1.68837 1.32635 1.45955 1.69425 1.11523 1.08330 1.21036 1.01103 0.79041 0.95743 1.22459 0.97981 0.95506 0.95099 0.86802 1.21428 0.95161 0.89338 0.92360 1.44633 1.15063 1.22926 1.51967 1.19413 0.94348 1.04437 1.18345 0.90501 1.25530 1.00363 0.97695 1.02069 1.69985 1.28949 1.15238 1.45516 0.85108 0.79096 0.76746 0.78560 1.21380 1.22015 1.19736 1.22452 0.86039 0.99165 0.92277 1.23075 0.95714 0.90895 0.86906 0.89213 1.86370 1.75400 1.25912 1.49935 0.88768 0.88985 0.88310 0.84738 0.87071 0.85704 0.86020 0.87977 0.75114 0.90454 0.92416 0.96559 0.95237 0.94362 0.90281 0.98149 0.76257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.49 71.24 0.75 -0.50 16 2 C 0.06 1.32 7.59 45.15 0.34 1.66 16 3 N -0.37 -9.09 12.01 -44.78 -0.54 -9.63 16 4 O 0.09 2.13 10.86 77.00 0.84 2.97 16 5 C 0.07 1.48 7.00 25.48 0.18 1.66 16 6 C -0.12 -2.27 6.15 -11.54 -0.07 -2.34 16 7 C -0.14 -1.89 10.19 30.62 0.31 -1.58 16 8 C -0.15 -2.21 10.24 30.62 0.31 -1.89 16 9 C -0.27 -6.71 6.24 -18.75 -0.12 -6.82 16 10 C 0.61 17.04 7.63 86.66 0.66 17.70 16 11 O -0.56 -20.17 17.11 -4.05 -0.07 -20.24 16 12 N -0.70 -17.39 5.40 -466.39 -2.52 -19.91 16 13 C 0.15 4.35 4.59 86.38 0.40 4.75 16 14 C -0.09 -2.76 2.95 -9.60 -0.03 -2.79 16 15 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 16 C 0.14 5.50 6.52 86.73 0.57 6.07 16 17 N -0.62 -30.67 3.39 -692.01 -2.35 -33.02 16 18 C -0.24 -12.97 10.27 84.03 0.86 -12.11 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 21 N -0.95 -54.39 10.09 21.65 0.22 -54.18 16 22 Si 0.98 44.79 29.55 68.60 2.03 46.82 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C 0.13 5.76 5.62 86.86 0.49 6.25 16 27 C 0.09 3.19 4.17 31.98 0.13 3.32 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 O -0.57 -19.62 12.22 -148.98 -1.82 -21.44 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.11 1.36 8.02 -2.39 -0.02 1.34 16 35 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.41 8.67 8.31 -92.71 -0.77 7.90 16 39 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.06 1.98 7.44 -2.39 -0.02 1.97 16 41 H 0.02 0.67 7.77 -2.39 -0.02 0.65 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 44 H 0.08 4.15 5.87 -2.39 -0.01 4.14 16 45 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.39 10.94 9.12 -74.06 -0.68 10.27 16 Total: -1.00 -72.68 387.45 0.62 -72.06 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.42 Total: 26.27 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 5.25 Total: 10.29 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -5.19 Total: -116.73 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -1.05 Total: -38.71 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -72.68 0.62 -72.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958277545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.781 kcal (2) G-P(sol) polarization free energy of solvation -72.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds