Wall clock time and date at job start Tue Mar 31 2020 19:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30014 * 127.33614 * 2 1 4 4 O 1.20661 * 112.30039 * 180.30509 * 3 2 1 5 5 C 1.33495 * 113.15463 * 359.71481 * 4 3 2 6 6 C 1.50693 * 126.82555 * 180.02562 * 5 4 3 7 7 C 1.52996 * 117.50132 * 8.60147 * 6 5 4 8 8 C 1.52996 * 60.00360 * 252.50589 * 7 6 5 9 9 C 1.37359 * 106.34248 * 0.02562 * 5 4 3 10 10 C 1.47403 * 128.56278 * 179.97438 * 9 5 4 11 11 O 1.21604 * 120.00064 * 89.99774 * 10 9 5 12 12 N 1.34778 * 119.99434 * 269.99534 * 10 9 5 13 13 C 1.46502 * 119.99368 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47019 * 180.02562 * 13 12 10 15 15 H 1.09003 * 110.91724 * 308.90657 * 14 13 12 16 16 C 1.54914 * 111.00639 * 72.80268 * 14 13 12 17 17 N 1.47426 * 104.83155 * 155.08560 * 16 14 13 18 18 C 1.36931 * 125.64651 * 155.91316 * 17 16 14 19 19 H 1.07995 * 120.00300 * 353.89503 * 18 17 16 20 20 C 1.38815 * 119.99938 * 173.90046 * 18 17 16 21 21 N 1.31622 * 120.00071 * 6.82561 * 20 18 17 22 22 Si 1.86796 * 119.99997 * 186.82740 * 20 18 17 23 23 H 1.48497 * 109.47287 * 94.98367 * 22 20 18 24 24 H 1.48502 * 109.47239 * 214.98409 * 22 20 18 25 25 H 1.48501 * 109.47187 * 334.98415 * 22 20 18 26 26 C 1.47027 * 108.70332 * 335.87005 * 17 16 14 27 27 C 1.54325 * 107.27137 * 1.06265 * 26 17 16 28 28 H 1.08998 * 110.87319 * 140.62321 * 27 26 17 29 29 O 1.42900 * 110.71958 * 263.82507 * 27 26 17 30 30 H 1.09009 * 109.47082 * 270.14091 * 1 2 3 31 31 H 1.08996 * 109.47255 * 30.13947 * 1 2 3 32 32 H 1.08998 * 109.47604 * 150.14128 * 1 2 3 33 33 H 1.09003 * 115.55153 * 154.30616 * 6 5 4 34 34 H 1.09002 * 117.50129 * 0.02562 * 7 6 5 35 35 H 1.09008 * 117.49920 * 145.02080 * 7 6 5 36 36 H 1.08997 * 117.50504 * 252.51392 * 8 7 6 37 37 H 1.08999 * 117.51846 * 107.47198 * 8 7 6 38 38 H 0.96994 * 120.00851 * 0.02562 * 12 10 9 39 39 H 1.08999 * 109.47199 * 60.00423 * 13 12 10 40 40 H 1.08998 * 109.47634 * 300.00155 * 13 12 10 41 41 H 1.08997 * 110.36989 * 273.92572 * 16 14 13 42 42 H 1.08996 * 110.36117 * 36.24917 * 16 14 13 43 43 H 0.96996 * 120.00027 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.88261 * 241.64040 * 26 17 16 45 45 H 1.09002 * 109.87880 * 120.47783 * 26 17 16 46 46 H 0.96696 * 113.99954 * 293.52589 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0059 5 6 3.6494 -0.6008 -0.0049 6 6 4.9711 -1.3247 -0.0105 7 6 6.2362 -0.4868 0.1847 8 6 5.9105 -1.0710 -1.1912 9 6 2.3991 -1.1696 0.0023 10 6 2.0400 -2.5992 0.0058 11 8 1.8974 -3.1878 1.0603 12 7 1.8696 -3.2540 -1.1599 13 6 1.5132 -4.6750 -1.1564 14 6 1.3818 -5.1713 -2.5977 15 1 0.7254 -4.5203 -3.1751 16 6 2.7714 -5.2967 -3.2708 17 7 2.5874 -6.3036 -4.3317 18 6 3.3520 -6.4212 -5.4616 19 1 4.1073 -5.6815 -5.6819 20 6 3.1561 -7.4913 -6.3239 21 7 2.1502 -8.3176 -6.1295 22 14 4.3201 -7.7586 -7.7602 23 1 5.3764 -8.7258 -7.3679 24 1 3.5620 -8.2963 -8.9184 25 1 4.9474 -6.4661 -8.1361 26 6 1.4476 -7.1613 -3.9752 27 6 0.8831 -6.6401 -2.6368 28 1 -0.2063 -6.6776 -2.6339 29 8 1.4157 -7.3843 -1.5394 30 1 -0.3634 0.0025 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3634 -0.8912 -0.5116 33 1 4.9600 -2.3271 0.4174 34 1 6.1126 0.5880 0.3177 35 1 7.0578 -0.9379 0.7414 36 1 6.5176 -1.9065 -1.5399 37 1 5.5723 -0.3809 -1.9642 38 1 1.9836 -2.7847 -2.0010 39 1 0.5644 -4.8104 -0.6372 40 1 2.2909 -5.2434 -0.6463 41 1 3.0716 -4.3417 -3.7020 42 1 3.5132 -5.6377 -2.5486 43 1 2.0135 -9.0655 -6.7318 44 1 1.7814 -8.1925 -3.8603 45 1 0.6822 -7.1011 -4.7490 46 1 1.1342 -8.3091 -1.5178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958277549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:02 Heat of formation + Delta-G solvation = 27.061627 kcal Electronic energy + Delta-G solvation = -29217.777941 eV Core-core repulsion = 25112.497687 eV Total energy + Delta-G solvation = -4105.280254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.07690 -39.67155 -38.30142 -37.68533 -34.98681 -34.76731 -34.61243 -32.31142 -31.82818 -29.74975 -29.01398 -27.82175 -25.93977 -24.73510 -23.84537 -23.14833 -22.72506 -20.93578 -20.27313 -19.99497 -19.54747 -18.05288 -17.93016 -17.38718 -16.82431 -16.36019 -16.13469 -15.76598 -14.97606 -14.88173 -14.55043 -14.07241 -13.80291 -13.75433 -13.62664 -13.57267 -13.40237 -13.13749 -12.77563 -12.62487 -12.33670 -11.92382 -11.91616 -11.68976 -11.49572 -11.43843 -11.27387 -10.86833 -10.79368 -10.70445 -10.54038 -10.38050 -10.11457 -10.08661 -9.95008 -9.81774 -9.39204 -9.24162 -9.01821 -8.68373 -6.90789 -5.80553 -3.12591 1.03890 1.69701 2.34655 2.55050 3.18812 3.35594 3.41076 3.42766 3.46320 3.83836 3.95884 4.36044 4.42154 4.48397 4.55095 4.64342 4.74512 4.98804 5.04991 5.16127 5.20940 5.27391 5.30187 5.32027 5.34652 5.37565 5.48506 5.54664 5.55369 5.66576 5.75261 5.77509 5.84584 5.98939 6.03780 6.30391 6.32790 6.39321 6.54758 6.83446 7.30553 7.43572 7.46447 7.69480 7.99939 8.10293 8.15722 8.19117 9.13180 9.74188 10.39990 11.31922 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.002990 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.471601 B = 9362.382600 C =10523.417749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.055 3.945 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.054 3.946 6 C -0.097 4.097 7 C -0.162 4.162 8 C -0.154 4.154 9 C -0.244 4.244 10 C 0.598 3.402 11 O -0.528 6.528 12 N -0.712 5.712 13 C 0.140 3.860 14 C -0.110 4.110 15 H 0.089 0.911 16 C 0.146 3.854 17 N -0.603 5.603 18 C -0.229 4.229 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.152 3.848 27 C 0.083 3.917 28 H 0.057 0.943 29 O -0.564 6.564 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.403 0.597 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.026 0.974 43 H 0.253 0.747 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 14.230 11.629 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.010 4.010 6 C -0.116 4.116 7 C -0.199 4.199 8 C -0.191 4.191 9 C -0.251 4.251 10 C 0.382 3.618 11 O -0.404 6.404 12 N -0.363 5.363 13 C 0.017 3.983 14 C -0.130 4.130 15 H 0.107 0.893 16 C 0.019 3.981 17 N -0.329 5.329 18 C -0.357 4.357 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.570 5.570 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.027 3.973 27 C 0.023 3.977 28 H 0.075 0.925 29 O -0.370 6.370 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.159 0.841 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.237 0.763 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.057 15.533 12.319 19.825 hybrid contribution 0.176 -1.369 -1.389 1.958 sum 0.119 14.164 10.930 17.891 Atomic orbital electron populations 1.20230 0.85067 1.04208 1.03978 1.24738 0.98577 0.86480 1.00878 1.73619 0.89033 1.23238 1.20412 1.84496 1.21544 1.22404 1.68147 1.23544 0.95572 0.83381 0.98480 1.20562 0.84026 0.99659 1.07358 1.23094 0.96727 1.00158 0.99897 1.23161 1.00489 1.03981 0.91463 1.21865 0.92467 0.95475 1.15314 1.16812 0.77130 0.83701 0.84205 1.90830 1.50435 1.67972 1.31150 1.46104 1.69952 1.12186 1.08048 1.21257 1.01466 0.78540 0.96996 1.22690 1.00234 0.95509 0.94522 0.89290 1.21574 0.92829 0.92880 0.90775 1.44361 1.34464 1.33813 1.20267 1.19067 1.12589 1.06690 0.97383 0.90357 1.24810 0.98509 0.97493 0.99487 1.69940 1.29806 1.17846 1.39371 0.86112 0.80236 0.77932 0.81576 1.21574 1.21756 1.20604 1.21866 0.90130 0.94909 0.90364 1.23114 0.95440 0.90617 0.88489 0.92514 1.86399 1.75637 1.26241 1.48690 0.89568 0.89861 0.89702 0.84141 0.87682 0.87317 0.86897 0.87891 0.76301 0.91459 0.90063 0.94597 0.95626 0.93712 0.92877 0.93323 0.77720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.49 36.01 0.38 -0.31 16 2 C 0.06 0.66 7.59 -79.77 -0.61 0.06 16 3 N -0.36 -4.51 12.01 34.78 0.42 -4.09 16 4 O 0.10 1.13 10.86 18.65 0.20 1.34 16 5 C 0.05 0.62 7.00 -34.63 -0.24 0.37 16 6 C -0.10 -0.91 6.15 -91.77 -0.56 -1.48 16 7 C -0.16 -1.16 10.18 -26.74 -0.27 -1.43 16 8 C -0.15 -1.19 10.23 -26.73 -0.27 -1.47 16 9 C -0.24 -3.10 6.24 -102.89 -0.64 -3.74 16 10 C 0.60 8.49 7.63 -12.53 -0.10 8.40 16 11 O -0.53 -9.35 17.11 5.27 0.09 -9.26 16 12 N -0.71 -9.19 5.50 -61.39 -0.34 -9.52 16 13 C 0.14 2.06 4.60 -4.04 -0.02 2.04 16 14 C -0.11 -1.77 2.98 -88.47 -0.26 -2.03 16 15 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 16 C 0.15 2.85 6.64 -2.53 -0.02 2.83 16 17 N -0.60 -14.74 3.39 -170.07 -0.58 -15.32 16 18 C -0.23 -6.19 10.26 -15.06 -0.15 -6.35 16 19 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 21 N -0.92 -26.20 10.36 55.49 0.58 -25.62 16 22 Si 0.91 21.56 29.56 -169.99 -5.02 16.54 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.15 3.47 5.14 -3.06 -0.02 3.46 16 27 C 0.08 1.45 4.09 -24.89 -0.10 1.35 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 O -0.56 -9.44 12.24 -35.23 -0.43 -9.87 16 30 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.14 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.10 0.72 8.02 -51.93 -0.42 0.30 16 35 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 4.55 8.46 -40.82 -0.35 4.21 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.36 7.55 -51.93 -0.39 0.97 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.54 7.90 -51.93 -0.41 0.12 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.05 1.35 7.30 -51.93 -0.38 0.97 16 45 H 0.05 1.22 7.55 -51.93 -0.39 0.83 16 46 H 0.38 4.95 9.12 45.56 0.42 5.37 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -33.37 388.67 -8.33 -41.70 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.12 Total: 6.84 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -2.98 Total: 1.42 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.08 Total: -54.56 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.14 Total: -17.79 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.37 -8.33 -41.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958277549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.764 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds