Wall clock time and date at job start Tue Mar 31 2020 19:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30014 * 127.33614 * 2 1 4 4 O 1.20661 * 112.30039 * 180.30509 * 3 2 1 5 5 C 1.33495 * 113.15463 * 359.71481 * 4 3 2 6 6 C 1.50693 * 126.82555 * 180.02562 * 5 4 3 7 7 C 1.52996 * 117.50132 * 8.60147 * 6 5 4 8 8 C 1.52996 * 60.00360 * 252.50589 * 7 6 5 9 9 C 1.37359 * 106.34248 * 0.02562 * 5 4 3 10 10 C 1.47403 * 128.56278 * 179.97438 * 9 5 4 11 11 O 1.21604 * 120.00064 * 89.99774 * 10 9 5 12 12 N 1.34778 * 119.99434 * 269.99534 * 10 9 5 13 13 C 1.46502 * 119.99368 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47019 * 180.02562 * 13 12 10 15 15 H 1.09003 * 110.91724 * 308.90657 * 14 13 12 16 16 C 1.54914 * 111.00639 * 72.80268 * 14 13 12 17 17 N 1.47426 * 104.83155 * 155.08560 * 16 14 13 18 18 C 1.36931 * 125.64651 * 155.91316 * 17 16 14 19 19 H 1.07995 * 120.00300 * 353.89503 * 18 17 16 20 20 C 1.38815 * 119.99938 * 173.90046 * 18 17 16 21 21 N 1.31622 * 120.00071 * 6.82561 * 20 18 17 22 22 Si 1.86796 * 119.99997 * 186.82740 * 20 18 17 23 23 H 1.48497 * 109.47287 * 94.98367 * 22 20 18 24 24 H 1.48502 * 109.47239 * 214.98409 * 22 20 18 25 25 H 1.48501 * 109.47187 * 334.98415 * 22 20 18 26 26 C 1.47027 * 108.70332 * 335.87005 * 17 16 14 27 27 C 1.54325 * 107.27137 * 1.06265 * 26 17 16 28 28 H 1.08998 * 110.87319 * 140.62321 * 27 26 17 29 29 O 1.42900 * 110.71958 * 263.82507 * 27 26 17 30 30 H 1.09009 * 109.47082 * 270.14091 * 1 2 3 31 31 H 1.08996 * 109.47255 * 30.13947 * 1 2 3 32 32 H 1.08998 * 109.47604 * 150.14128 * 1 2 3 33 33 H 1.09003 * 115.55153 * 154.30616 * 6 5 4 34 34 H 1.09002 * 117.50129 * 0.02562 * 7 6 5 35 35 H 1.09008 * 117.49920 * 145.02080 * 7 6 5 36 36 H 1.08997 * 117.50504 * 252.51392 * 8 7 6 37 37 H 1.08999 * 117.51846 * 107.47198 * 8 7 6 38 38 H 0.96994 * 120.00851 * 0.02562 * 12 10 9 39 39 H 1.08999 * 109.47199 * 60.00423 * 13 12 10 40 40 H 1.08998 * 109.47634 * 300.00155 * 13 12 10 41 41 H 1.08997 * 110.36989 * 273.92572 * 16 14 13 42 42 H 1.08996 * 110.36117 * 36.24917 * 16 14 13 43 43 H 0.96996 * 120.00027 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.88261 * 241.64040 * 26 17 16 45 45 H 1.09002 * 109.87880 * 120.47783 * 26 17 16 46 46 H 0.96696 * 113.99954 * 293.52589 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0059 5 6 3.6494 -0.6008 -0.0049 6 6 4.9711 -1.3247 -0.0105 7 6 6.2362 -0.4868 0.1847 8 6 5.9105 -1.0710 -1.1912 9 6 2.3991 -1.1696 0.0023 10 6 2.0400 -2.5992 0.0058 11 8 1.8974 -3.1878 1.0603 12 7 1.8696 -3.2540 -1.1599 13 6 1.5132 -4.6750 -1.1564 14 6 1.3818 -5.1713 -2.5977 15 1 0.7254 -4.5203 -3.1751 16 6 2.7714 -5.2967 -3.2708 17 7 2.5874 -6.3036 -4.3317 18 6 3.3520 -6.4212 -5.4616 19 1 4.1073 -5.6815 -5.6819 20 6 3.1561 -7.4913 -6.3239 21 7 2.1502 -8.3176 -6.1295 22 14 4.3201 -7.7586 -7.7602 23 1 5.3764 -8.7258 -7.3679 24 1 3.5620 -8.2963 -8.9184 25 1 4.9474 -6.4661 -8.1361 26 6 1.4476 -7.1613 -3.9752 27 6 0.8831 -6.6401 -2.6368 28 1 -0.2063 -6.6776 -2.6339 29 8 1.4157 -7.3843 -1.5394 30 1 -0.3634 0.0025 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3634 -0.8912 -0.5116 33 1 4.9600 -2.3271 0.4174 34 1 6.1126 0.5880 0.3177 35 1 7.0578 -0.9379 0.7414 36 1 6.5176 -1.9065 -1.5399 37 1 5.5723 -0.3809 -1.9642 38 1 1.9836 -2.7847 -2.0010 39 1 0.5644 -4.8104 -0.6372 40 1 2.2909 -5.2434 -0.6463 41 1 3.0716 -4.3417 -3.7020 42 1 3.5132 -5.6377 -2.5486 43 1 2.0135 -9.0655 -6.7318 44 1 1.7814 -8.1925 -3.8603 45 1 0.6822 -7.1011 -4.7490 46 1 1.1342 -8.3091 -1.5178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958277549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:01 Heat of formation + Delta-G solvation = 3.326769 kcal Electronic energy + Delta-G solvation = -29218.807162 eV Core-core repulsion = 25112.497687 eV Total energy + Delta-G solvation = -4106.309475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.98486 -40.88103 -39.77150 -38.36743 -36.39416 -36.10644 -35.65820 -33.95503 -32.86933 -31.33908 -29.81866 -29.44330 -27.44757 -26.16010 -24.73020 -24.40558 -23.32331 -22.30730 -21.73882 -21.25188 -20.52203 -19.20470 -19.00054 -18.84231 -18.08070 -17.55663 -17.08113 -16.86407 -16.78573 -16.08381 -15.74955 -15.51715 -15.30956 -14.83253 -14.78859 -14.37668 -14.33690 -14.31575 -14.22899 -13.92345 -13.53230 -13.13455 -13.11592 -13.05476 -12.68671 -12.53315 -12.43668 -12.36589 -12.20877 -12.08256 -11.91046 -11.77907 -11.65598 -11.45577 -11.25490 -11.00156 -10.78909 -10.69266 -10.25575 -10.19683 -8.88955 -7.86824 -5.20353 0.14670 0.79012 1.25127 1.46707 1.48497 1.56736 1.63246 2.15566 2.49233 2.78723 3.03023 3.12296 3.29454 3.34692 3.57082 3.58277 3.67522 3.84570 3.92408 3.94740 3.97366 4.01477 4.15436 4.40373 4.43737 4.49852 4.56525 4.59558 4.64722 4.69483 4.75261 4.85380 4.90883 4.91795 4.99886 5.03784 5.07189 5.19347 5.24624 5.38648 5.41835 5.55537 5.71403 6.18537 6.36235 6.94096 7.02113 7.09952 7.10127 7.76896 8.41461 9.23913 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.002990 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.471601 B = 9362.382600 C =10523.417749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.057 3.943 3 N -0.373 5.373 4 O 0.092 5.908 5 C 0.065 3.935 6 C -0.120 4.120 7 C -0.146 4.146 8 C -0.148 4.148 9 C -0.269 4.269 10 C 0.608 3.392 11 O -0.566 6.566 12 N -0.700 5.700 13 C 0.156 3.844 14 C -0.093 4.093 15 H 0.108 0.892 16 C 0.144 3.856 17 N -0.624 5.624 18 C -0.242 4.242 19 H 0.083 0.917 20 C -0.063 4.063 21 N -0.949 5.949 22 Si 0.974 3.026 23 H -0.291 1.291 24 H -0.295 1.295 25 H -0.266 1.266 26 C 0.158 3.842 27 C 0.097 3.903 28 H 0.088 0.912 29 O -0.570 6.570 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.413 0.587 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.015 0.985 43 H 0.247 0.753 44 H 0.017 0.983 45 H 0.019 0.981 46 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 15.770 11.876 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 N -0.082 5.082 4 O 0.033 5.967 5 C 0.002 3.998 6 C -0.139 4.139 7 C -0.182 4.182 8 C -0.185 4.185 9 C -0.276 4.276 10 C 0.392 3.608 11 O -0.445 6.445 12 N -0.351 5.351 13 C 0.032 3.968 14 C -0.112 4.112 15 H 0.127 0.873 16 C 0.019 3.981 17 N -0.350 5.350 18 C -0.371 4.371 19 H 0.101 0.899 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.802 3.198 23 H -0.218 1.218 24 H -0.222 1.222 25 H -0.191 1.191 26 C 0.033 3.967 27 C 0.037 3.963 28 H 0.106 0.894 29 O -0.378 6.378 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.152 0.848 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.249 0.751 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.056 0.944 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.239 17.103 12.565 21.224 hybrid contribution 0.146 -1.848 -1.439 2.347 sum 0.385 15.255 11.126 18.885 Atomic orbital electron populations 1.20386 0.83171 1.05280 1.04802 1.25191 0.99796 0.85857 0.99709 1.73608 0.89317 1.23688 1.21592 1.84480 1.21450 1.22477 1.68274 1.23890 0.96092 0.83223 0.96615 1.20647 0.84062 0.99726 1.09429 1.23223 0.95495 1.00204 0.99320 1.23235 0.99496 1.04241 0.91496 1.21770 0.93387 0.94854 1.17602 1.16880 0.76128 0.84076 0.83668 1.90810 1.52252 1.68945 1.32478 1.45947 1.69282 1.11492 1.08353 1.20970 1.01181 0.79063 0.95549 1.22578 0.98188 0.95209 0.95243 0.87347 1.21687 0.94727 0.92125 0.89594 1.44676 1.34627 1.35129 1.20618 1.19459 1.12722 1.06688 0.98223 0.89902 1.25602 1.00058 0.97641 1.02292 1.70145 1.31235 1.18182 1.40205 0.85127 0.78126 0.78089 0.78429 1.21784 1.22180 1.19077 1.21695 0.89050 0.93380 0.92575 1.22947 0.96777 0.90938 0.85688 0.89444 1.86377 1.76039 1.27592 1.47805 0.88785 0.88372 0.89024 0.84821 0.87220 0.85612 0.86137 0.87765 0.75097 0.90630 0.92052 0.93225 0.96751 0.94407 0.96494 0.96269 0.75961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.49 71.24 0.75 -0.52 16 2 C 0.06 1.28 7.59 45.16 0.34 1.63 16 3 N -0.37 -9.04 12.01 -44.78 -0.54 -9.57 16 4 O 0.09 2.10 10.86 76.97 0.84 2.93 16 5 C 0.07 1.44 7.00 25.48 0.18 1.62 16 6 C -0.12 -2.11 6.15 -11.54 -0.07 -2.18 16 7 C -0.15 -1.79 10.18 30.59 0.31 -1.48 16 8 C -0.15 -2.03 10.23 30.59 0.31 -1.72 16 9 C -0.27 -6.56 6.24 -18.74 -0.12 -6.68 16 10 C 0.61 16.62 7.63 86.66 0.66 17.28 16 11 O -0.57 -19.75 17.11 -4.04 -0.07 -19.82 16 12 N -0.70 -16.85 5.50 -466.40 -2.56 -19.41 16 13 C 0.16 4.28 4.60 86.38 0.40 4.67 16 14 C -0.09 -2.80 2.98 -9.40 -0.03 -2.82 16 15 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 16 C 0.14 5.47 6.64 86.86 0.58 6.05 16 17 N -0.62 -30.60 3.39 -691.98 -2.35 -32.95 16 18 C -0.24 -13.12 10.26 84.04 0.86 -12.26 16 19 H 0.08 4.28 7.84 -2.91 -0.02 4.26 16 20 C -0.06 -3.47 5.48 84.86 0.47 -3.00 16 21 N -0.95 -55.23 10.36 21.65 0.22 -55.01 16 22 Si 0.97 44.58 29.56 68.60 2.03 46.61 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 C 0.16 7.31 5.14 86.73 0.45 7.76 16 27 C 0.10 3.23 4.09 31.78 0.13 3.36 16 28 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 29 O -0.57 -18.38 12.24 -148.98 -1.82 -20.21 16 30 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.11 1.27 8.02 -2.39 -0.02 1.25 16 35 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.41 8.44 8.46 -92.71 -0.78 7.65 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 1.99 7.55 -2.39 -0.02 1.97 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.01 0.59 7.90 -2.39 -0.02 0.58 16 43 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.02 0.89 7.30 -2.39 -0.02 0.87 16 45 H 0.02 0.99 7.55 -2.39 -0.02 0.97 16 46 H 0.39 9.90 9.12 -74.06 -0.68 9.23 16 Total: -1.00 -72.95 388.67 0.52 -72.43 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -0.44 Total: 23.29 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 5.22 Total: 11.71 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -5.23 Total: -116.95 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -1.06 Total: -37.09 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.95 0.52 -72.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958277549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.757 kcal (2) G-P(sol) polarization free energy of solvation -72.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds