Wall clock time and date at job start Tue Mar 31 2020 19:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30012 * 127.33582 * 2 1 4 4 O 1.20665 * 112.30274 * 179.73497 * 3 2 1 5 5 C 1.33492 * 113.15306 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.82751 * 179.97438 * 5 4 3 7 7 C 1.37352 * 106.34565 * 0.02562 * 5 4 3 8 8 C 1.47397 * 128.56951 * 180.02562 * 7 5 4 9 9 O 1.21613 * 120.00108 * 269.99953 * 8 7 5 10 10 N 1.34780 * 120.00296 * 89.99245 * 8 7 5 11 11 C 1.47083 * 125.62816 * 0.03329 * 10 8 7 12 12 C 1.54459 * 107.29575 * 180.98711 * 11 10 8 13 13 C 1.54374 * 102.87429 * 21.49640 * 12 11 10 14 14 C 1.47577 * 125.63044 * 179.72026 * 10 8 7 15 15 C 1.52354 * 110.38790 * 207.59349 * 13 12 11 16 16 N 1.47326 * 108.45361 * 186.60212 * 15 13 12 17 17 C 1.36939 * 121.07253 * 229.15307 * 16 15 13 18 18 H 1.08001 * 119.99910 * 153.76526 * 17 16 15 19 19 C 1.38812 * 120.00326 * 333.76911 * 17 16 15 20 20 N 1.31626 * 120.00059 * 344.16369 * 19 17 16 21 21 Si 1.86801 * 120.00085 * 164.16541 * 19 17 16 22 22 H 1.48500 * 109.47219 * 89.99937 * 21 19 17 23 23 H 1.48501 * 109.46801 * 209.99787 * 21 19 17 24 24 H 1.48499 * 109.46851 * 330.00004 * 21 19 17 25 25 C 1.47158 * 117.84937 * 49.13550 * 16 15 13 26 26 C 1.53281 * 108.53686 * 308.71996 * 25 16 15 27 27 O 1.41885 * 110.71482 * 83.66847 * 13 12 11 28 28 H 1.09000 * 109.46554 * 90.02549 * 1 2 3 29 29 H 1.08995 * 109.47226 * 210.02840 * 1 2 3 30 30 H 1.09004 * 109.46988 * 330.03096 * 1 2 3 31 31 H 1.09006 * 109.47145 * 0.02562 * 6 5 4 32 32 H 1.08998 * 109.47386 * 120.02328 * 6 5 4 33 33 H 1.08999 * 109.47264 * 240.02495 * 6 5 4 34 34 H 1.09000 * 109.87784 * 300.41354 * 11 10 8 35 35 H 1.09000 * 109.87940 * 61.41027 * 11 10 8 36 36 H 1.08998 * 110.73527 * 139.84413 * 12 11 10 37 37 H 1.09002 * 110.73065 * 263.15783 * 12 11 10 38 38 H 1.08997 * 110.37313 * 275.51176 * 14 10 8 39 39 H 1.08993 * 110.37324 * 37.86036 * 14 10 8 40 40 H 1.08997 * 109.64060 * 306.29476 * 15 13 12 41 41 H 1.09000 * 109.63528 * 66.70298 * 15 13 12 42 42 H 0.96994 * 119.99805 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.63023 * 68.43445 * 25 16 15 44 44 H 1.09005 * 109.62593 * 189.00370 * 25 16 15 45 45 H 1.09004 * 109.51430 * 172.99110 * 26 25 16 46 46 H 1.08999 * 109.51113 * 293.08640 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0052 5 6 3.6494 -0.6008 0.0101 6 6 4.9711 -1.3246 0.0166 7 6 2.3992 -1.1696 0.0069 8 6 2.0400 -2.5992 0.0105 9 8 1.8962 -3.1927 -1.0412 10 7 1.8710 -3.2487 1.1794 11 6 2.0128 -2.6551 2.5176 12 6 1.7524 -3.7767 3.5473 13 6 2.0165 -5.0605 2.7317 14 6 1.5069 -4.6711 1.3276 15 6 1.2025 -6.2209 3.2902 16 7 1.6036 -7.4525 2.5880 17 6 0.6681 -8.3004 2.0579 18 1 0.9250 -8.9325 1.2207 19 6 -0.6104 -8.3476 2.5965 20 7 -0.8437 -7.8306 3.7843 21 14 -1.9999 -9.1448 1.6356 22 1 -2.0721 -10.5886 1.9756 23 1 -3.2848 -8.4886 1.9871 24 1 -1.7472 -8.9910 0.1804 25 6 3.0420 -7.7416 2.4745 26 6 3.7453 -6.5019 1.9106 27 8 3.4025 -5.3629 2.7066 28 1 -0.3632 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 5.7835 -0.5978 0.0172 32 1 5.0401 -1.9472 0.9087 33 1 5.0460 -1.9524 -0.8713 34 1 3.0219 -2.2628 2.6441 35 1 1.2850 -1.8540 2.6468 36 1 2.4470 -3.7013 4.3839 37 1 0.7205 -3.7473 3.8971 38 1 0.4257 -4.7944 1.2657 39 1 2.0025 -5.2712 0.5647 40 1 1.3995 -6.3267 4.3570 41 1 0.1406 -6.0338 3.1305 42 1 -1.7370 -7.8639 4.1607 43 1 3.4472 -7.9763 3.4588 44 1 3.1937 -8.5861 1.8022 45 1 4.8246 -6.6524 1.9359 46 1 3.4247 -6.3378 0.8818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972249448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:49 Heat of formation + Delta-G solvation = 16.795621 kcal Electronic energy + Delta-G solvation = -30713.050627 eV Core-core repulsion = 26607.325206 eV Total energy + Delta-G solvation = -4105.725421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.99125 -40.26336 -38.63488 -36.18112 -34.69087 -34.50978 -33.72902 -31.78968 -31.28031 -29.18759 -28.97183 -28.40555 -27.57807 -26.06204 -24.26257 -23.33183 -22.86479 -21.15008 -20.56897 -19.50367 -18.85162 -17.98513 -17.66028 -17.02878 -16.52310 -16.22854 -15.41958 -15.26345 -14.94998 -14.41951 -14.25312 -14.24202 -13.74149 -13.68852 -13.55575 -13.35935 -13.30977 -13.20465 -12.93656 -12.87642 -12.69557 -12.53764 -12.18063 -11.92923 -11.42863 -11.23697 -11.14937 -11.11988 -10.89366 -10.79185 -10.53830 -10.33315 -10.16433 -9.99834 -9.96932 -9.60909 -9.48725 -9.14182 -8.60312 -8.48641 -6.80644 -5.90252 -3.33060 1.17295 1.77363 2.43348 2.68254 3.15840 3.31776 3.39483 3.42380 3.93582 4.09955 4.13489 4.38812 4.52855 4.76552 4.78198 4.93182 5.02830 5.14922 5.20872 5.23355 5.28155 5.29300 5.33758 5.39993 5.46225 5.50411 5.61640 5.69737 5.75854 5.82307 5.85794 5.96246 6.01317 6.11908 6.16763 6.19725 6.38000 6.43968 6.56748 6.72917 6.98041 7.34453 7.54739 7.67543 7.84110 8.07297 8.14119 8.26462 9.05452 9.68002 10.24799 11.18376 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.003644 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.420562 B = 7681.154754 C = 8406.205102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.358 5.358 4 O 0.094 5.906 5 C 0.017 3.983 6 C -0.079 4.079 7 C -0.241 4.241 8 C 0.610 3.390 9 O -0.529 6.529 10 N -0.600 5.600 11 C 0.107 3.893 12 C -0.115 4.115 13 C 0.086 3.914 14 C 0.095 3.905 15 C 0.164 3.836 16 N -0.595 5.595 17 C -0.253 4.253 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.905 5.905 21 Si 0.902 3.098 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.110 3.890 26 C 0.044 3.956 27 O -0.373 6.373 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.098 0.902 42 H 0.255 0.745 43 H 0.027 0.973 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.394 14.247 -2.401 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 N -0.066 5.066 4 O 0.033 5.967 5 C -0.047 4.047 6 C -0.137 4.137 7 C -0.248 4.248 8 C 0.396 3.604 9 O -0.406 6.406 10 N -0.333 5.333 11 C -0.016 4.016 12 C -0.154 4.154 13 C 0.044 3.956 14 C -0.026 4.026 15 C 0.037 3.963 16 N -0.319 5.319 17 C -0.382 4.382 18 H 0.087 0.913 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.731 3.269 22 H -0.213 1.213 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.016 4.016 26 C -0.033 4.033 27 O -0.292 6.292 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.107 15.361 -2.856 17.602 hybrid contribution -1.043 -1.359 -0.526 1.792 sum 7.063 14.001 -3.382 16.043 Atomic orbital electron populations 1.20228 0.85169 1.04129 1.03990 1.24733 0.98561 0.86492 1.00888 1.73589 0.89157 1.23328 1.20486 1.84519 1.21487 1.22600 1.68126 1.24589 0.97429 0.83616 0.99037 1.20485 0.88816 0.99301 1.05052 1.21895 0.92874 0.95240 1.14816 1.16441 0.77438 0.83702 0.82836 1.90836 1.51287 1.67702 1.30733 1.48527 1.67503 1.12156 1.05133 1.22042 1.01108 0.96486 0.81966 1.22553 1.03402 0.92014 0.97393 1.22761 0.83619 0.96223 0.93025 1.22880 1.01126 0.79251 0.99342 1.21168 0.98557 0.82339 0.94197 1.44109 0.99711 1.21774 1.66283 1.19180 0.91250 1.18236 1.09515 0.91340 1.25014 0.99039 0.99920 0.95436 1.69993 1.21001 1.49363 1.14582 0.86301 0.81788 0.78987 0.79798 1.21289 1.21445 1.20338 1.21590 0.86439 0.95117 0.98495 1.23112 0.98780 0.87197 0.94254 1.87612 1.22979 1.47840 1.70757 0.89589 0.89764 0.89903 0.89247 0.88469 0.88593 0.91590 0.91727 0.89089 0.88801 0.89977 0.89666 0.94788 0.88434 0.93474 0.95475 0.91846 0.89852 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.49 36.01 0.38 -0.43 16 2 C 0.06 0.72 7.59 -79.77 -0.61 0.12 16 3 N -0.36 -4.77 12.01 34.78 0.42 -4.35 16 4 O 0.09 1.15 11.06 18.65 0.21 1.36 16 5 C 0.02 0.19 7.55 -34.63 -0.26 -0.07 16 6 C -0.08 -0.66 10.33 36.01 0.37 -0.29 16 7 C -0.24 -3.35 5.42 -102.89 -0.56 -3.90 16 8 C 0.61 10.02 7.66 -12.53 -0.10 9.93 16 9 O -0.53 -10.64 17.37 5.27 0.09 -10.55 16 10 N -0.60 -9.39 3.33 -171.89 -0.57 -9.96 16 11 C 0.11 1.37 6.48 -2.96 -0.02 1.36 16 12 C -0.12 -1.61 6.11 -25.25 -0.15 -1.77 16 13 C 0.09 1.52 0.83 -89.52 -0.07 1.45 16 14 C 0.10 1.73 5.87 -2.74 -0.02 1.71 16 15 C 0.16 3.59 4.05 -3.92 -0.02 3.57 16 16 N -0.59 -14.07 2.99 -172.26 -0.52 -14.59 16 17 C -0.25 -6.60 9.66 -15.06 -0.15 -6.74 16 18 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 19 C 0.00 0.12 4.98 -17.43 -0.09 0.03 16 20 N -0.90 -24.77 11.11 55.49 0.62 -24.16 16 21 Si 0.90 21.00 29.58 -169.99 -5.03 15.97 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.11 2.19 6.71 -3.54 -0.02 2.17 16 26 C 0.04 0.76 6.79 37.30 0.25 1.02 16 27 O -0.37 -6.65 10.28 -35.22 -0.36 -7.02 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.26 8.00 -51.93 -0.42 0.84 16 38 H 0.08 1.59 7.82 -51.93 -0.41 1.18 16 39 H 0.09 1.71 6.05 -51.93 -0.31 1.40 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 2.36 5.95 -51.93 -0.31 2.05 16 42 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 45 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.05 0.84 6.29 -51.93 -0.33 0.52 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -31.52 375.54 -7.35 -38.87 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.81 Total: 0.62 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.05 Total: 8.15 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.05 Total: -53.06 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.06 Total: -16.21 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.52 -7.35 -38.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972249448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.667 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds