Wall clock time and date at job start Tue Mar 31 2020 19:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30012 * 127.33582 * 2 1 4 4 O 1.20665 * 112.30274 * 179.73497 * 3 2 1 5 5 C 1.33492 * 113.15306 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.82751 * 179.97438 * 5 4 3 7 7 C 1.37352 * 106.34565 * 0.02562 * 5 4 3 8 8 C 1.47397 * 128.56951 * 180.02562 * 7 5 4 9 9 O 1.21613 * 120.00108 * 269.99953 * 8 7 5 10 10 N 1.34780 * 120.00296 * 89.99245 * 8 7 5 11 11 C 1.47083 * 125.62816 * 0.03329 * 10 8 7 12 12 C 1.54459 * 107.29575 * 180.98711 * 11 10 8 13 13 C 1.54374 * 102.87429 * 21.49640 * 12 11 10 14 14 C 1.47577 * 125.63044 * 179.72026 * 10 8 7 15 15 C 1.52354 * 110.38790 * 207.59349 * 13 12 11 16 16 N 1.47326 * 108.45361 * 186.60212 * 15 13 12 17 17 C 1.36939 * 121.07253 * 229.15307 * 16 15 13 18 18 H 1.08001 * 119.99910 * 153.76526 * 17 16 15 19 19 C 1.38812 * 120.00326 * 333.76911 * 17 16 15 20 20 N 1.31626 * 120.00059 * 344.16369 * 19 17 16 21 21 Si 1.86801 * 120.00085 * 164.16541 * 19 17 16 22 22 H 1.48500 * 109.47219 * 89.99937 * 21 19 17 23 23 H 1.48501 * 109.46801 * 209.99787 * 21 19 17 24 24 H 1.48499 * 109.46851 * 330.00004 * 21 19 17 25 25 C 1.47158 * 117.84937 * 49.13550 * 16 15 13 26 26 C 1.53281 * 108.53686 * 308.71996 * 25 16 15 27 27 O 1.41885 * 110.71482 * 83.66847 * 13 12 11 28 28 H 1.09000 * 109.46554 * 90.02549 * 1 2 3 29 29 H 1.08995 * 109.47226 * 210.02840 * 1 2 3 30 30 H 1.09004 * 109.46988 * 330.03096 * 1 2 3 31 31 H 1.09006 * 109.47145 * 0.02562 * 6 5 4 32 32 H 1.08998 * 109.47386 * 120.02328 * 6 5 4 33 33 H 1.08999 * 109.47264 * 240.02495 * 6 5 4 34 34 H 1.09000 * 109.87784 * 300.41354 * 11 10 8 35 35 H 1.09000 * 109.87940 * 61.41027 * 11 10 8 36 36 H 1.08998 * 110.73527 * 139.84413 * 12 11 10 37 37 H 1.09002 * 110.73065 * 263.15783 * 12 11 10 38 38 H 1.08997 * 110.37313 * 275.51176 * 14 10 8 39 39 H 1.08993 * 110.37324 * 37.86036 * 14 10 8 40 40 H 1.08997 * 109.64060 * 306.29476 * 15 13 12 41 41 H 1.09000 * 109.63528 * 66.70298 * 15 13 12 42 42 H 0.96994 * 119.99805 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.63023 * 68.43445 * 25 16 15 44 44 H 1.09005 * 109.62593 * 189.00370 * 25 16 15 45 45 H 1.09004 * 109.51430 * 172.99110 * 26 25 16 46 46 H 1.08999 * 109.51113 * 293.08640 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0052 5 6 3.6494 -0.6008 0.0101 6 6 4.9711 -1.3246 0.0166 7 6 2.3992 -1.1696 0.0069 8 6 2.0400 -2.5992 0.0105 9 8 1.8962 -3.1927 -1.0412 10 7 1.8710 -3.2487 1.1794 11 6 2.0128 -2.6551 2.5176 12 6 1.7524 -3.7767 3.5473 13 6 2.0165 -5.0605 2.7317 14 6 1.5069 -4.6711 1.3276 15 6 1.2025 -6.2209 3.2902 16 7 1.6036 -7.4525 2.5880 17 6 0.6681 -8.3004 2.0579 18 1 0.9250 -8.9325 1.2207 19 6 -0.6104 -8.3476 2.5965 20 7 -0.8437 -7.8306 3.7843 21 14 -1.9999 -9.1448 1.6356 22 1 -2.0721 -10.5886 1.9756 23 1 -3.2848 -8.4886 1.9871 24 1 -1.7472 -8.9910 0.1804 25 6 3.0420 -7.7416 2.4745 26 6 3.7453 -6.5019 1.9106 27 8 3.4025 -5.3629 2.7066 28 1 -0.3632 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 5.7835 -0.5978 0.0172 32 1 5.0401 -1.9472 0.9087 33 1 5.0460 -1.9524 -0.8713 34 1 3.0219 -2.2628 2.6441 35 1 1.2850 -1.8540 2.6468 36 1 2.4470 -3.7013 4.3839 37 1 0.7205 -3.7473 3.8971 38 1 0.4257 -4.7944 1.2657 39 1 2.0025 -5.2712 0.5647 40 1 1.3995 -6.3267 4.3570 41 1 0.1406 -6.0338 3.1305 42 1 -1.7370 -7.8639 4.1607 43 1 3.4472 -7.9763 3.4588 44 1 3.1937 -8.5861 1.8022 45 1 4.8246 -6.6524 1.9359 46 1 3.4247 -6.3378 0.8818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972249448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:48 Heat of formation + Delta-G solvation = -3.148986 kcal Electronic energy + Delta-G solvation = -30713.915490 eV Core-core repulsion = 26607.325206 eV Total energy + Delta-G solvation = -4106.590284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.95903 -41.64089 -40.05218 -37.59226 -36.26228 -35.65792 -34.63124 -33.31324 -33.03271 -30.49524 -29.88122 -29.53187 -28.91304 -27.63266 -25.58996 -24.96597 -24.10574 -22.66430 -21.55623 -20.68339 -20.32627 -19.06466 -18.92215 -18.65596 -17.70888 -17.63202 -16.90208 -16.57586 -16.39734 -16.11556 -15.70422 -15.30049 -15.21561 -14.97992 -14.76849 -14.56708 -14.42994 -14.28575 -14.07233 -13.96868 -13.65762 -13.56949 -13.43184 -13.32658 -13.01577 -12.85466 -12.69344 -12.49956 -12.32269 -12.17334 -12.15931 -12.15572 -11.80237 -11.44835 -11.15777 -10.99024 -10.78946 -10.52946 -10.44311 -9.80753 -8.71597 -7.90977 -5.35906 0.23438 0.78438 1.19015 1.44170 1.47329 1.55585 1.62949 2.06689 2.46768 2.75615 2.98641 3.20469 3.22740 3.33725 3.52441 3.61166 3.78447 3.87142 4.02574 4.18234 4.21761 4.23571 4.33025 4.43508 4.47778 4.50710 4.54482 4.58117 4.60692 4.62969 4.72760 4.74458 4.77358 4.90779 5.00280 5.01794 5.02909 5.06022 5.10167 5.17739 5.24240 5.52656 5.61682 6.27795 6.29937 6.38494 6.86029 7.08131 7.13303 7.75592 8.29013 9.15080 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.003644 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.420562 B = 7681.154754 C = 8406.205102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.054 3.946 3 N -0.371 5.371 4 O 0.096 5.904 5 C 0.039 3.961 6 C -0.081 4.081 7 C -0.271 4.271 8 C 0.616 3.384 9 O -0.575 6.575 10 N -0.596 5.596 11 C 0.110 3.890 12 C -0.109 4.109 13 C 0.093 3.907 14 C 0.105 3.895 15 C 0.174 3.826 16 N -0.614 5.614 17 C -0.263 4.263 18 H 0.066 0.934 19 C -0.041 4.041 20 N -0.930 5.930 21 Si 0.958 3.042 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.106 3.894 26 C 0.052 3.948 27 O -0.369 6.369 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.012 0.988 41 H 0.070 0.930 42 H 0.252 0.748 43 H 0.025 0.975 44 H 0.067 0.933 45 H 0.122 0.878 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.909 15.918 -2.289 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 N -0.080 5.080 4 O 0.037 5.963 5 C -0.025 4.025 6 C -0.138 4.138 7 C -0.278 4.278 8 C 0.404 3.596 9 O -0.455 6.455 10 N -0.328 5.328 11 C -0.012 4.012 12 C -0.147 4.147 13 C 0.051 3.949 14 C -0.018 4.018 15 C 0.048 3.952 16 N -0.339 5.339 17 C -0.392 4.392 18 H 0.084 0.916 19 C -0.237 4.237 20 N -0.576 5.576 21 Si 0.787 3.213 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.201 1.201 25 C -0.020 4.020 26 C -0.025 4.025 27 O -0.288 6.288 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.138 0.862 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.030 0.970 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.140 0.860 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.658 17.056 -2.723 19.789 hybrid contribution -1.446 -1.925 -0.564 2.473 sum 8.212 15.131 -3.287 17.527 Atomic orbital electron populations 1.20334 0.83844 1.04922 1.04548 1.25069 0.99535 0.86027 1.00212 1.73587 0.89497 1.23525 1.21370 1.84515 1.21158 1.22752 1.67909 1.25119 0.97951 0.83253 0.96197 1.20703 0.87981 0.99866 1.05241 1.21668 0.94318 0.93851 1.17996 1.16694 0.76337 0.84497 0.82096 1.90806 1.53331 1.68982 1.32342 1.48515 1.66879 1.11055 1.06320 1.22209 1.03063 0.96217 0.79704 1.22595 1.04252 0.90020 0.97817 1.22518 0.83030 0.96097 0.93246 1.22530 0.99571 0.80835 0.98878 1.20942 0.97797 0.83507 0.92995 1.44371 1.01009 1.22231 1.66270 1.19438 0.92179 1.18240 1.09391 0.91645 1.25631 1.00827 1.00977 0.96220 1.70119 1.21037 1.50700 1.15715 0.85416 0.79218 0.78064 0.78626 1.21086 1.21586 1.20130 1.21755 0.84651 0.96951 0.98636 1.23113 1.00558 0.85501 0.93346 1.87626 1.22504 1.47855 1.70772 0.89134 0.90004 0.88030 0.86168 0.87685 0.88686 0.89488 0.89598 0.87158 0.88466 0.92074 0.91935 0.97028 0.91209 0.93866 0.95729 0.91429 0.85986 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 10.49 71.24 0.75 -0.78 16 2 C 0.05 1.31 7.59 45.16 0.34 1.65 16 3 N -0.37 -9.14 12.01 -44.77 -0.54 -9.68 16 4 O 0.10 2.13 11.06 76.99 0.85 2.98 16 5 C 0.04 0.80 7.55 25.48 0.19 1.00 16 6 C -0.08 -1.09 10.33 71.24 0.74 -0.35 16 7 C -0.27 -7.09 5.42 -18.75 -0.10 -7.19 16 8 C 0.62 19.85 7.66 86.65 0.66 20.51 16 9 O -0.57 -23.43 17.37 -4.07 -0.07 -23.50 16 10 N -0.60 -18.08 3.33 -815.97 -2.72 -20.80 16 11 C 0.11 2.54 6.48 86.76 0.56 3.10 16 12 C -0.11 -2.85 6.11 31.56 0.19 -2.65 16 13 C 0.09 3.26 0.83 -10.08 -0.01 3.25 16 14 C 0.10 3.83 5.87 86.64 0.51 4.34 16 15 C 0.17 7.79 4.05 86.01 0.35 8.14 16 16 N -0.61 -29.62 2.99 -698.90 -2.09 -31.71 16 17 C -0.26 -14.02 9.66 84.03 0.81 -13.21 16 18 H 0.07 3.45 7.88 -2.91 -0.02 3.43 16 19 C -0.04 -2.19 4.98 84.86 0.42 -1.77 16 20 N -0.93 -52.24 11.11 21.65 0.24 -52.00 16 21 Si 0.96 43.97 29.58 68.60 2.03 46.00 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 C 0.11 4.18 6.71 86.35 0.58 4.76 16 26 C 0.05 1.72 6.79 72.08 0.49 2.21 16 27 O -0.37 -12.51 10.28 -148.95 -1.53 -14.04 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.10 2.49 8.00 -2.39 -0.02 2.47 16 38 H 0.06 2.48 7.82 -2.39 -0.02 2.46 16 39 H 0.06 2.58 6.05 -2.39 -0.01 2.56 16 40 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.07 3.51 5.95 -2.39 -0.01 3.49 16 42 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 43 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.07 2.57 7.96 -2.38 -0.02 2.55 16 45 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 46 H 0.04 1.36 6.29 -2.39 -0.02 1.34 16 Total: -1.00 -69.83 375.54 3.65 -66.17 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.99 Total: 13.57 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 6.49 Total: 23.01 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -5.11 Total: -114.20 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.75 Total: -34.56 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -69.83 3.65 -66.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972249448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.024 kcal (2) G-P(sol) polarization free energy of solvation -69.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds