Wall clock time and date at job start Tue Mar 31 2020 18:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35456 * 126.77778 * 2 1 4 4 C 1.41374 * 103.98786 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.80319 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.46944 * 124.99931 * 5 4 3 7 7 O 1.21278 * 120.00208 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99841 * 180.02562 * 6 5 4 9 9 C 1.47481 * 125.66241 * 0.03615 * 8 6 5 10 10 C 1.55023 * 104.90592 * 203.97690 * 9 8 6 11 11 C 1.54491 * 101.53239 * 323.64387 * 10 9 8 12 12 C 1.47188 * 125.66138 * 180.02562 * 8 6 5 13 13 C 1.52521 * 110.09365 * 153.03394 * 11 10 9 14 14 N 1.47300 * 108.39817 * 173.02811 * 13 11 10 15 15 C 1.36937 * 121.05974 * 130.57620 * 14 13 11 16 16 H 1.07992 * 120.00135 * 205.76896 * 15 14 13 17 17 C 1.38821 * 119.99614 * 25.77405 * 15 14 13 18 18 N 1.31609 * 120.00222 * 16.75757 * 17 15 14 19 19 Si 1.86806 * 119.99648 * 196.76269 * 17 15 14 20 20 H 1.48500 * 109.46930 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46805 * 119.99776 * 19 17 15 22 22 H 1.48491 * 109.46922 * 239.99894 * 19 17 15 23 23 C 1.47164 * 117.88437 * 310.59656 * 14 13 11 24 24 C 1.53287 * 108.53095 * 51.12470 * 23 14 13 25 25 O 1.42066 * 110.38699 * 276.05715 * 11 10 9 26 26 N 1.30175 * 106.39880 * 0.26338 * 4 3 2 27 27 O 1.20927 * 111.60149 * 359.53177 * 26 4 3 28 28 H 1.09002 * 109.47018 * 90.00360 * 1 2 3 29 29 H 1.09006 * 109.46970 * 209.99823 * 1 2 3 30 30 H 1.08997 * 109.47074 * 330.00253 * 1 2 3 31 31 H 1.08000 * 128.00598 * 359.94059 * 3 2 1 32 32 H 1.09001 * 109.46690 * 5.00002 * 5 4 3 33 33 H 1.08999 * 109.47295 * 244.99748 * 5 4 3 34 34 H 1.08999 * 110.35671 * 322.83684 * 9 8 6 35 35 H 1.09004 * 110.35116 * 85.01271 * 9 8 6 36 36 H 1.08997 * 111.01444 * 205.58548 * 10 9 8 37 37 H 1.08993 * 111.01666 * 81.70667 * 10 9 8 38 38 H 1.08996 * 109.90890 * 59.15232 * 12 8 6 39 39 H 1.08998 * 109.90808 * 297.88765 * 12 8 6 40 40 H 1.08998 * 109.68018 * 292.76001 * 13 11 10 41 41 H 1.09002 * 109.67480 * 53.25920 * 13 11 10 42 42 H 0.97004 * 119.99987 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.62634 * 170.83629 * 23 14 13 44 44 H 1.09003 * 109.62838 * 291.21957 * 23 14 13 45 45 H 1.08993 * 109.50518 * 187.18890 * 24 23 14 46 46 H 1.09003 * 109.50958 * 67.04195 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6213 0.5373 0.0006 5 6 4.9211 1.3001 0.0003 6 6 5.7665 0.8523 1.1647 7 8 5.3545 -0.0024 1.9200 8 7 6.9806 1.4017 1.3666 9 6 7.6018 2.4458 0.5304 10 6 9.1263 2.2895 0.7644 11 6 9.1717 1.9092 2.2611 12 6 7.9066 1.0593 2.4582 13 6 10.4206 1.0844 2.5545 14 7 10.5152 0.8862 4.0110 15 6 10.7250 -0.3583 4.5425 16 1 10.3914 -0.5804 5.5453 17 6 11.3665 -1.3343 3.7922 18 7 12.0586 -0.9953 2.7254 19 14 11.2471 -3.1290 4.2967 20 1 10.4173 -3.2443 5.5228 21 1 10.6220 -3.9109 3.1999 22 1 12.6076 -3.6582 4.5687 23 6 10.3767 2.0680 4.8769 24 6 9.1013 2.8182 4.4769 25 8 9.1278 3.0764 3.0698 26 7 3.4764 -0.7563 -0.0048 27 8 2.3096 -1.0736 0.0006 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 2.0345 2.1271 -0.0009 32 1 4.7162 2.3670 0.0891 33 1 5.4545 1.1088 -0.9308 34 1 7.3608 2.2834 -0.5201 35 1 7.2673 3.4337 0.8470 36 1 9.6478 3.2294 0.5840 37 1 9.5369 1.4916 0.1458 38 1 8.1598 0.0002 2.4117 39 1 7.4491 1.2923 3.4198 40 1 10.3474 0.1177 2.0564 41 1 11.3032 1.6152 2.1975 42 1 12.5072 -1.6773 2.2013 43 1 10.3049 1.7528 5.9178 44 1 11.2424 2.7182 4.7502 45 1 9.0490 3.7622 5.0193 46 1 8.2299 2.2097 4.7190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972301425.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:52 Heat of formation + Delta-G solvation = 19.697062 kcal Electronic energy + Delta-G solvation = -29803.641313 eV Core-core repulsion = 25698.041707 eV Total energy + Delta-G solvation = -4105.599605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.98810 -40.23388 -38.70239 -36.15631 -34.71229 -34.47946 -33.52988 -31.85764 -31.24498 -29.66840 -29.04527 -27.98033 -27.44282 -25.61010 -23.40234 -23.26742 -23.08378 -21.11341 -20.86778 -19.01818 -18.66363 -17.79034 -17.34213 -17.01830 -16.76202 -16.39315 -15.43508 -15.28592 -14.83596 -14.59127 -14.35289 -14.14295 -14.08265 -13.67787 -13.54907 -13.49806 -13.23202 -13.04915 -12.95149 -12.75322 -12.56005 -12.32128 -11.98391 -11.78736 -11.43118 -11.18030 -11.09600 -11.06485 -10.83885 -10.74987 -10.47242 -10.27208 -10.24344 -9.93222 -9.65245 -9.55617 -9.40858 -9.07982 -8.55421 -8.38864 -6.77113 -5.85669 -3.27742 1.40303 2.10190 2.78014 3.00437 3.17220 3.36785 3.45425 3.47313 4.00880 4.17557 4.27138 4.44109 4.61743 4.80476 4.82005 4.92640 4.97586 5.05649 5.07415 5.19481 5.27094 5.31093 5.35322 5.38734 5.46370 5.53327 5.64200 5.67026 5.80028 5.83204 5.89681 6.01941 6.06956 6.17219 6.22440 6.29762 6.46879 6.55805 6.60534 6.75873 7.02818 7.40176 7.70097 7.72419 7.86977 8.26430 8.30923 8.32947 9.09951 9.72900 10.29115 11.22923 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.003158 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.154368 B = 8863.248601 C =10031.965747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.041 4.041 3 C -0.229 4.229 4 C 0.028 3.972 5 C -0.057 4.057 6 C 0.525 3.475 7 O -0.528 6.528 8 N -0.615 5.615 9 C 0.101 3.899 10 C -0.117 4.117 11 C 0.085 3.915 12 C 0.099 3.901 13 C 0.163 3.837 14 N -0.595 5.595 15 C -0.252 4.252 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.289 1.289 23 C 0.110 3.890 24 C 0.044 3.956 25 O -0.376 6.376 26 N -0.334 5.334 27 O 0.105 5.895 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.170 0.830 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.034 0.966 42 H 0.255 0.745 43 H 0.063 0.937 44 H 0.027 0.973 45 H 0.084 0.916 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.294 10.192 -8.915 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.250 4.250 4 C -0.131 4.131 5 C -0.097 4.097 6 C 0.312 3.688 7 O -0.404 6.404 8 N -0.350 5.350 9 C -0.022 4.022 10 C -0.155 4.155 11 C 0.044 3.956 12 C -0.023 4.023 13 C 0.037 3.963 14 N -0.319 5.319 15 C -0.381 4.381 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.549 5.549 19 Si 0.731 3.269 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.216 1.216 23 C -0.016 4.016 24 C -0.034 4.034 25 O -0.295 6.295 26 N -0.035 5.035 27 O 0.035 5.965 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.188 0.812 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.102 0.898 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.620 8.713 -8.674 21.486 hybrid contribution -0.183 -0.271 0.408 0.523 sum -17.803 8.442 -8.266 21.367 Atomic orbital electron populations 1.20304 0.84166 1.04601 1.03890 1.24480 0.96392 0.86380 1.03202 1.22324 0.91087 1.00902 1.10732 1.22793 0.95990 0.90154 1.04200 1.19966 0.90304 1.00228 0.99240 1.19874 0.80599 0.81950 0.86358 1.90761 1.71068 1.31313 1.47248 1.48602 1.16508 1.39858 1.30034 1.22401 0.93816 0.91401 0.94608 1.22700 0.94493 1.03548 0.94788 1.22690 0.96058 0.86609 0.90287 1.22505 0.89150 1.01013 0.89617 1.21250 0.90648 0.98830 0.85615 1.44125 1.84261 1.02820 1.00710 1.19221 1.31403 0.86968 1.00482 0.91285 1.25008 0.96928 0.98955 0.98649 1.70006 1.33490 1.32128 1.19237 0.86226 0.77353 0.85109 0.78180 1.20151 1.21385 1.21624 1.21583 0.94624 0.89977 0.95454 1.23105 0.98974 0.99755 0.81575 1.87653 1.94890 1.30107 1.16812 1.73925 0.96235 1.16216 1.17095 1.84875 1.11380 1.33180 1.67080 0.89539 0.89853 0.89206 0.81225 0.86825 0.87086 0.90883 0.90981 0.88969 0.88992 0.89910 0.91276 0.88480 0.94839 0.93544 0.91899 0.95470 0.89803 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.45 36.00 0.38 0.00 16 2 C -0.04 -0.41 7.49 -35.30 -0.26 -0.68 16 3 C -0.23 -2.37 11.05 -39.38 -0.44 -2.80 16 4 C 0.03 0.39 6.10 -82.10 -0.50 -0.12 16 5 C -0.06 -0.68 5.30 -29.04 -0.15 -0.84 16 6 C 0.53 8.95 7.84 -10.98 -0.09 8.87 16 7 O -0.53 -11.54 15.93 5.56 0.09 -11.46 16 8 N -0.62 -10.10 3.33 -170.67 -0.57 -10.67 16 9 C 0.10 1.25 6.69 -2.44 -0.02 1.24 16 10 C -0.12 -1.71 6.21 -24.88 -0.15 -1.86 16 11 C 0.09 1.60 0.81 -89.73 -0.07 1.53 16 12 C 0.10 1.95 5.96 -3.31 -0.02 1.93 16 13 C 0.16 3.77 3.98 -3.85 -0.02 3.76 16 14 N -0.60 -14.73 2.97 -172.17 -0.51 -15.25 16 15 C -0.25 -6.87 9.66 -15.06 -0.15 -7.01 16 16 H 0.07 1.87 7.88 -52.49 -0.41 1.45 16 17 C 0.00 0.09 4.96 -17.43 -0.09 0.00 16 18 N -0.90 -25.84 11.12 55.49 0.62 -25.23 16 19 Si 0.90 22.12 29.59 -169.99 -5.03 17.10 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C 0.11 2.28 6.72 -3.53 -0.02 2.26 16 24 C 0.04 0.78 6.76 37.31 0.25 1.03 16 25 O -0.38 -6.98 10.26 -35.23 -0.36 -7.34 16 26 N -0.33 -5.46 11.48 33.42 0.38 -5.07 16 27 O 0.10 1.45 11.20 17.16 0.19 1.64 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.11 1.11 7.85 -51.93 -0.41 0.70 16 34 H 0.07 0.68 7.48 -51.93 -0.39 0.30 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.09 1.34 8.01 -51.93 -0.42 0.92 16 38 H 0.08 1.90 7.61 -51.93 -0.40 1.50 16 39 H 0.07 1.44 6.00 -51.93 -0.31 1.13 16 40 H 0.10 2.51 5.90 -51.93 -0.31 2.21 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.05 0.87 6.22 -51.93 -0.32 0.55 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -35.55 371.75 -7.67 -43.22 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.74 Total: 0.15 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -1.35 Total: 7.31 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.08 Total: -56.22 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.08 Total: -17.15 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.55 -7.67 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972301425.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.914 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds