Wall clock time and date at job start Tue Mar 31 2020 18:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35456 * 126.77778 * 2 1 4 4 C 1.41374 * 103.98786 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.80319 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.46944 * 124.99931 * 5 4 3 7 7 O 1.21278 * 120.00208 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99841 * 180.02562 * 6 5 4 9 9 C 1.47481 * 125.66241 * 0.03615 * 8 6 5 10 10 C 1.55023 * 104.90592 * 203.97690 * 9 8 6 11 11 C 1.54491 * 101.53239 * 323.64387 * 10 9 8 12 12 C 1.47188 * 125.66138 * 180.02562 * 8 6 5 13 13 C 1.52521 * 110.09365 * 153.03394 * 11 10 9 14 14 N 1.47300 * 108.39817 * 173.02811 * 13 11 10 15 15 C 1.36937 * 121.05974 * 130.57620 * 14 13 11 16 16 H 1.07992 * 120.00135 * 205.76896 * 15 14 13 17 17 C 1.38821 * 119.99614 * 25.77405 * 15 14 13 18 18 N 1.31609 * 120.00222 * 16.75757 * 17 15 14 19 19 Si 1.86806 * 119.99648 * 196.76269 * 17 15 14 20 20 H 1.48500 * 109.46930 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46805 * 119.99776 * 19 17 15 22 22 H 1.48491 * 109.46922 * 239.99894 * 19 17 15 23 23 C 1.47164 * 117.88437 * 310.59656 * 14 13 11 24 24 C 1.53287 * 108.53095 * 51.12470 * 23 14 13 25 25 O 1.42066 * 110.38699 * 276.05715 * 11 10 9 26 26 N 1.30175 * 106.39880 * 0.26338 * 4 3 2 27 27 O 1.20927 * 111.60149 * 359.53177 * 26 4 3 28 28 H 1.09002 * 109.47018 * 90.00360 * 1 2 3 29 29 H 1.09006 * 109.46970 * 209.99823 * 1 2 3 30 30 H 1.08997 * 109.47074 * 330.00253 * 1 2 3 31 31 H 1.08000 * 128.00598 * 359.94059 * 3 2 1 32 32 H 1.09001 * 109.46690 * 5.00002 * 5 4 3 33 33 H 1.08999 * 109.47295 * 244.99748 * 5 4 3 34 34 H 1.08999 * 110.35671 * 322.83684 * 9 8 6 35 35 H 1.09004 * 110.35116 * 85.01271 * 9 8 6 36 36 H 1.08997 * 111.01444 * 205.58548 * 10 9 8 37 37 H 1.08993 * 111.01666 * 81.70667 * 10 9 8 38 38 H 1.08996 * 109.90890 * 59.15232 * 12 8 6 39 39 H 1.08998 * 109.90808 * 297.88765 * 12 8 6 40 40 H 1.08998 * 109.68018 * 292.76001 * 13 11 10 41 41 H 1.09002 * 109.67480 * 53.25920 * 13 11 10 42 42 H 0.97004 * 119.99987 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.62634 * 170.83629 * 23 14 13 44 44 H 1.09003 * 109.62838 * 291.21957 * 23 14 13 45 45 H 1.08993 * 109.50518 * 187.18890 * 24 23 14 46 46 H 1.09003 * 109.50958 * 67.04195 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6213 0.5373 0.0006 5 6 4.9211 1.3001 0.0003 6 6 5.7665 0.8523 1.1647 7 8 5.3545 -0.0024 1.9200 8 7 6.9806 1.4017 1.3666 9 6 7.6018 2.4458 0.5304 10 6 9.1263 2.2895 0.7644 11 6 9.1717 1.9092 2.2611 12 6 7.9066 1.0593 2.4582 13 6 10.4206 1.0844 2.5545 14 7 10.5152 0.8862 4.0110 15 6 10.7250 -0.3583 4.5425 16 1 10.3914 -0.5804 5.5453 17 6 11.3665 -1.3343 3.7922 18 7 12.0586 -0.9953 2.7254 19 14 11.2471 -3.1290 4.2967 20 1 10.4173 -3.2443 5.5228 21 1 10.6220 -3.9109 3.1999 22 1 12.6076 -3.6582 4.5687 23 6 10.3767 2.0680 4.8769 24 6 9.1013 2.8182 4.4769 25 8 9.1278 3.0764 3.0698 26 7 3.4764 -0.7563 -0.0048 27 8 2.3096 -1.0736 0.0006 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 2.0345 2.1271 -0.0009 32 1 4.7162 2.3670 0.0891 33 1 5.4545 1.1088 -0.9308 34 1 7.3608 2.2834 -0.5201 35 1 7.2673 3.4337 0.8470 36 1 9.6478 3.2294 0.5840 37 1 9.5369 1.4916 0.1458 38 1 8.1598 0.0002 2.4117 39 1 7.4491 1.2923 3.4198 40 1 10.3474 0.1177 2.0564 41 1 11.3032 1.6152 2.1975 42 1 12.5072 -1.6773 2.2013 43 1 10.3049 1.7528 5.9178 44 1 11.2424 2.7182 4.7502 45 1 9.0490 3.7622 5.0193 46 1 8.2299 2.2097 4.7190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972301425.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:51 Heat of formation + Delta-G solvation = -5.515459 kcal Electronic energy + Delta-G solvation = -29804.734610 eV Core-core repulsion = 25698.041707 eV Total energy + Delta-G solvation = -4106.692902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.90358 -41.65182 -40.15758 -37.59754 -36.31528 -35.65406 -34.25687 -33.40290 -33.12590 -30.79161 -30.40191 -29.13256 -28.58074 -27.34432 -25.10417 -24.65437 -24.03818 -22.66976 -21.93463 -20.41532 -20.00038 -18.92533 -18.78521 -18.29297 -17.97014 -17.83237 -17.00893 -16.66151 -16.27962 -16.14098 -15.74861 -15.53381 -15.25338 -15.15044 -14.86492 -14.56193 -14.44587 -14.14948 -13.93509 -13.88739 -13.54319 -13.41590 -13.23504 -13.11521 -13.06483 -12.91981 -12.77791 -12.53082 -12.30482 -12.20512 -12.16882 -12.01163 -11.81332 -11.29150 -11.19629 -10.91016 -10.81478 -10.55412 -10.21069 -9.75411 -8.78108 -7.97282 -5.41240 0.59704 1.20755 1.36258 1.40632 1.48726 1.51194 1.93780 2.32749 2.40172 2.73574 3.13085 3.17417 3.33911 3.46302 3.57551 3.69132 3.83453 3.99906 4.13442 4.18946 4.21144 4.26233 4.31498 4.36952 4.47426 4.51298 4.56144 4.62546 4.67110 4.74097 4.76308 4.79642 4.88950 4.93676 5.00574 5.01960 5.05199 5.14535 5.18629 5.22435 5.30295 5.47214 5.55526 6.23218 6.31562 6.45667 7.01859 7.04519 7.40235 7.70352 8.22742 9.08678 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.003158 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.154368 B = 8863.248601 C =10031.965747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.041 4.041 3 C -0.229 4.229 4 C 0.010 3.990 5 C -0.046 4.046 6 C 0.517 3.483 7 O -0.589 6.589 8 N -0.615 5.615 9 C 0.104 3.896 10 C -0.114 4.114 11 C 0.093 3.907 12 C 0.110 3.890 13 C 0.172 3.828 14 N -0.616 5.616 15 C -0.260 4.260 16 H 0.066 0.934 17 C -0.046 4.046 18 N -0.929 5.929 19 Si 0.957 3.043 20 H -0.271 1.271 21 H -0.295 1.295 22 H -0.284 1.284 23 C 0.105 3.895 24 C 0.051 3.949 25 O -0.368 6.368 26 N -0.392 5.392 27 O 0.081 5.919 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.208 0.792 32 H 0.160 0.840 33 H 0.136 0.864 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.034 0.966 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.013 0.987 42 H 0.251 0.749 43 H 0.067 0.933 44 H 0.027 0.973 45 H 0.127 0.873 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.555 13.273 -10.179 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 C -0.250 4.250 4 C -0.149 4.149 5 C -0.085 4.085 6 C 0.307 3.693 7 O -0.469 6.469 8 N -0.348 5.348 9 C -0.017 4.017 10 C -0.152 4.152 11 C 0.051 3.949 12 C -0.013 4.013 13 C 0.046 3.954 14 N -0.340 5.340 15 C -0.390 4.390 16 H 0.084 0.916 17 C -0.241 4.241 18 N -0.575 5.575 19 Si 0.785 3.215 20 H -0.195 1.195 21 H -0.222 1.222 22 H -0.211 1.211 23 C -0.021 4.021 24 C -0.027 4.027 25 O -0.286 6.286 26 N -0.097 5.097 27 O 0.014 5.986 28 H 0.126 0.874 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.225 0.775 32 H 0.178 0.822 33 H 0.153 0.847 34 H 0.135 0.865 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.031 0.969 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.045 0.955 45 H 0.144 0.856 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -19.898 11.842 -9.951 25.203 hybrid contribution 0.495 -1.207 0.870 1.568 sum -19.403 10.635 -9.080 23.918 Atomic orbital electron populations 1.20565 0.80728 1.05872 1.05604 1.25444 0.98235 0.85467 1.01251 1.22786 0.89389 1.02648 1.10187 1.23349 0.97958 0.89902 1.03699 1.20116 0.88803 1.02301 0.97317 1.20901 0.80636 0.80809 0.86966 1.90733 1.72452 1.34004 1.49729 1.48704 1.16107 1.40556 1.29478 1.22709 0.91346 0.91216 0.96437 1.22775 0.96946 1.04498 0.90980 1.22437 0.93058 0.86152 0.93223 1.22068 0.90424 0.98390 0.90460 1.21027 0.92161 0.97576 0.84683 1.44395 1.84409 1.03366 1.01862 1.19471 1.30567 0.88530 1.00415 0.91628 1.25649 0.97292 1.02113 0.99080 1.70126 1.34493 1.32760 1.20154 0.85358 0.77316 0.81139 0.77638 1.19530 1.22192 1.21072 1.21778 0.96216 0.88847 0.95231 1.23130 0.96650 1.01239 0.81665 1.87668 1.94562 1.29389 1.17018 1.73920 0.97641 1.18251 1.19859 1.84800 1.11303 1.34810 1.67687 0.87417 0.89539 0.86914 0.77468 0.82220 0.84674 0.86515 0.88310 0.86543 0.89515 0.94745 0.93023 0.92010 0.96881 0.93923 0.91438 0.95469 0.85575 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.45 71.24 0.74 0.21 16 2 C -0.04 -0.75 7.49 25.04 0.19 -0.57 16 3 C -0.23 -4.11 11.05 22.40 0.25 -3.86 16 4 C 0.01 0.25 6.10 43.58 0.27 0.52 16 5 C -0.05 -0.96 5.30 29.10 0.15 -0.80 16 6 C 0.52 17.25 7.84 87.65 0.69 17.94 16 7 O -0.59 -26.72 15.93 -3.02 -0.05 -26.77 16 8 N -0.61 -19.47 3.33 -812.27 -2.71 -22.17 16 9 C 0.10 2.17 6.69 86.88 0.58 2.76 16 10 C -0.11 -3.08 6.21 31.79 0.20 -2.89 16 11 C 0.09 3.49 0.81 -10.22 -0.01 3.48 16 12 C 0.11 4.46 5.96 86.48 0.52 4.98 16 13 C 0.17 8.26 3.98 86.07 0.34 8.60 16 14 N -0.62 -31.49 2.97 -698.63 -2.08 -33.56 16 15 C -0.26 -14.71 9.66 84.04 0.81 -13.90 16 16 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 17 C -0.05 -2.62 4.96 84.87 0.42 -2.20 16 18 N -0.93 -55.34 11.12 21.65 0.24 -55.10 16 19 Si 0.96 47.15 29.59 68.60 2.03 49.18 16 20 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 22 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 23 C 0.10 4.34 6.72 86.35 0.58 4.92 16 24 C 0.05 1.73 6.76 72.08 0.49 2.22 16 25 O -0.37 -12.96 10.26 -148.97 -1.53 -14.49 16 26 N -0.39 -13.05 11.48 -49.56 -0.57 -13.62 16 27 O 0.08 2.27 11.20 71.58 0.80 3.08 16 28 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.14 2.18 7.85 -2.39 -0.02 2.16 16 34 H 0.12 1.52 7.48 -2.39 -0.02 1.51 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.09 2.45 8.01 -2.39 -0.02 2.43 16 38 H 0.03 1.70 7.61 -2.39 -0.02 1.68 16 39 H 0.05 2.24 6.00 -2.39 -0.01 2.22 16 40 H 0.06 3.40 5.90 -2.39 -0.01 3.39 16 41 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.07 2.68 7.96 -2.39 -0.02 2.67 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 46 H 0.04 1.40 6.22 -2.39 -0.01 1.39 16 Total: -1.00 -85.57 371.75 3.35 -82.22 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.99 Total: 9.83 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 6.22 Total: 21.42 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -5.11 Total: -124.46 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.78 Total: -38.18 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -85.57 3.35 -82.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972301425.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.707 kcal (2) G-P(sol) polarization free energy of solvation -85.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds