Wall clock time and date at job start Tue Mar 31 2020 19:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35264 * 126.71083 * 2 1 4 4 C 1.41932 * 103.96144 * 179.97438 * 3 2 1 5 5 O 1.35710 * 126.88595 * 179.97438 * 4 3 2 6 6 C 1.42899 * 117.00153 * 179.97438 * 5 4 3 7 7 C 1.50707 * 109.46849 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99877 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99949 * 180.02562 * 7 6 5 10 10 C 1.47676 * 134.45374 * 180.02562 * 9 7 6 11 11 C 1.53431 * 85.97287 * 155.70914 * 10 9 7 12 12 C 1.47665 * 134.45091 * 0.02562 * 9 7 6 13 13 C 1.52633 * 113.72891 * 268.85626 * 11 10 9 14 14 C 1.53187 * 109.34165 * 171.20081 * 13 11 10 15 15 C 1.52673 * 109.42726 * 58.93274 * 14 13 11 16 16 N 1.46904 * 109.35279 * 303.79041 * 15 14 13 17 17 C 1.36939 * 120.68653 * 235.29482 * 16 15 14 18 18 H 1.07997 * 120.00161 * 151.50478 * 17 16 15 19 19 C 1.38811 * 119.99885 * 331.50158 * 17 16 15 20 20 N 1.31622 * 120.00512 * 335.53428 * 19 17 16 21 21 Si 1.86800 * 119.99833 * 155.53497 * 19 17 16 22 22 H 1.48507 * 109.47405 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47472 * 300.00014 * 21 19 17 24 24 H 1.48500 * 109.47089 * 60.00034 * 21 19 17 25 25 C 1.47113 * 118.62011 * 55.02518 * 16 15 14 26 26 N 1.30620 * 106.24079 * 0.23617 * 4 3 2 27 27 O 1.20915 * 111.49557 * 359.57818 * 26 4 3 28 28 H 1.08998 * 109.47045 * 89.99814 * 1 2 3 29 29 H 1.08995 * 109.47420 * 210.00304 * 1 2 3 30 30 H 1.09009 * 109.46280 * 330.00345 * 1 2 3 31 31 H 1.08001 * 128.02606 * 359.95340 * 3 2 1 32 32 H 1.08999 * 109.47101 * 60.00112 * 6 5 4 33 33 H 1.08995 * 109.47041 * 299.99689 * 6 5 4 34 34 H 1.09000 * 113.79067 * 41.44469 * 10 9 7 35 35 H 1.09003 * 113.79154 * 269.97612 * 10 9 7 36 36 H 1.08997 * 113.79642 * 90.02831 * 12 9 7 37 37 H 1.09002 * 113.79724 * 318.54395 * 12 9 7 38 38 H 1.09010 * 109.49195 * 291.16140 * 13 11 10 39 39 H 1.09000 * 109.49440 * 51.23450 * 13 11 10 40 40 H 1.09003 * 109.49164 * 179.03132 * 14 13 11 41 41 H 1.09004 * 109.48659 * 299.08013 * 14 13 11 42 42 H 1.08994 * 109.43909 * 183.80006 * 15 14 13 43 43 H 1.08994 * 109.36558 * 63.72743 * 15 14 13 44 44 H 0.97000 * 119.99716 * 354.26397 * 20 19 17 45 45 H 1.09002 * 109.63888 * 68.56014 * 25 16 15 46 46 H 1.08998 * 109.64034 * 189.17578 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5355 0.0006 5 8 4.7955 1.2215 0.0004 6 6 5.9989 0.4509 0.0017 7 6 7.1881 1.3766 0.0006 8 8 7.0214 2.5780 -0.0007 9 7 8.4368 0.8695 0.0010 10 6 9.7917 1.4570 0.0007 11 6 10.2478 0.1347 0.6312 12 6 8.9983 -0.4962 0.0019 13 6 10.2279 0.1429 2.1574 14 6 10.4846 -1.2755 2.6757 15 6 11.8362 -1.7667 2.1631 16 7 11.8581 -1.6885 0.6963 17 6 12.1463 -2.7943 -0.0583 18 1 11.7380 -2.8904 -1.0534 19 6 12.9632 -3.7918 0.4560 20 7 13.8300 -3.5085 1.4052 21 14 12.8326 -5.5363 -0.1991 22 1 13.8064 -6.4054 0.5093 23 1 11.4568 -6.0479 0.0260 24 1 13.1312 -5.5424 -1.6537 25 6 11.5582 -0.3990 0.0547 26 7 3.4765 -0.7623 -0.0043 27 8 2.3085 -1.0750 0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8901 0.5138 31 1 2.0313 2.1263 -0.0007 32 1 6.0281 -0.1787 -0.8876 33 1 6.0274 -0.1767 0.8923 34 1 9.8976 2.3183 0.6602 35 1 10.1953 1.6309 -0.9968 36 1 9.1660 -0.9035 -0.9951 37 1 8.4741 -1.1868 0.6626 38 1 11.0050 0.8118 2.5277 39 1 9.2544 0.4872 2.5066 40 1 10.4880 -1.2694 3.7658 41 1 9.6989 -1.9411 2.3182 42 1 11.9891 -2.7996 2.4754 43 1 12.6279 -1.1397 2.5733 44 1 13.9571 -2.5892 1.6873 45 1 12.3629 0.3075 0.2586 46 1 11.4546 -0.5404 -1.0211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981823939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:18 Heat of formation + Delta-G solvation = 53.830501 kcal Electronic energy + Delta-G solvation = -28933.832813 eV Core-core repulsion = 24829.713344 eV Total energy + Delta-G solvation = -4104.119468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.18444 -40.80393 -39.42195 -37.94681 -36.09924 -34.18070 -32.93140 -32.81278 -30.98109 -30.33237 -28.71016 -28.05408 -26.23217 -25.58451 -25.15813 -23.70941 -22.41276 -21.70683 -20.77111 -19.37640 -18.17858 -18.14890 -17.99916 -17.42200 -17.13815 -16.77957 -16.48660 -15.85277 -15.37754 -14.58127 -14.35776 -14.24546 -14.16135 -13.89885 -13.77462 -13.66072 -13.59465 -13.38831 -13.17905 -12.89713 -12.77401 -12.44712 -12.12813 -11.89918 -11.83156 -11.50527 -11.37419 -11.11413 -10.76927 -10.52017 -10.33293 -10.11693 -10.06918 -9.89053 -9.85272 -9.75793 -9.48329 -9.31230 -8.70754 -8.42190 -6.94516 -6.12118 -3.30646 1.09751 1.97898 2.00980 2.46810 2.75943 3.10524 3.46055 3.49136 3.66973 3.89042 4.16885 4.43564 4.43803 4.60037 4.60736 4.78717 4.82321 4.88051 4.92612 4.96239 5.09502 5.18060 5.24622 5.30216 5.40197 5.44031 5.53933 5.55751 5.62413 5.63256 5.71476 5.79262 5.87348 6.08351 6.22122 6.35749 6.41180 6.51296 6.59478 6.64126 6.69091 7.01418 7.14652 7.61711 7.92502 7.94205 8.02395 8.51652 9.03943 9.77525 10.21884 11.16114 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.002523 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.445165 B =11096.997357 C =12321.627421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.233 4.233 4 C 0.213 3.787 5 O -0.258 6.258 6 C 0.052 3.948 7 C 0.538 3.462 8 O -0.530 6.530 9 N -0.638 5.638 10 C 0.120 3.880 11 C -0.101 4.101 12 C 0.117 3.883 13 C -0.084 4.084 14 C -0.136 4.136 15 C 0.148 3.852 16 N -0.595 5.595 17 C -0.350 4.350 18 H 0.056 0.944 19 C -0.022 4.022 20 N -0.914 5.914 21 Si 1.063 2.937 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.164 3.836 26 N -0.409 5.409 27 O 0.100 5.900 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.179 0.821 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.017 0.983 44 H 0.269 0.731 45 H 0.024 0.976 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.366 7.685 -1.510 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.255 4.255 4 C 0.015 3.985 5 O -0.163 6.163 6 C -0.027 4.027 7 C 0.326 3.674 8 O -0.406 6.406 9 N -0.375 5.375 10 C -0.002 4.002 11 C -0.104 4.104 12 C -0.005 4.005 13 C -0.122 4.122 14 C -0.175 4.175 15 C 0.022 3.978 16 N -0.319 5.319 17 C -0.479 4.479 18 H 0.074 0.926 19 C -0.225 4.225 20 N -0.554 5.554 21 Si 0.893 3.107 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.220 1.220 25 C 0.037 3.963 26 N -0.136 5.136 27 O 0.040 5.960 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.196 0.804 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.035 0.965 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.160 6.108 -1.342 22.065 hybrid contribution -0.769 2.195 -0.324 2.348 sum -21.930 8.303 -1.666 23.508 Atomic orbital electron populations 1.20384 0.83455 1.04954 1.04409 1.24367 0.96521 0.85603 1.00888 1.21792 0.88244 1.01707 1.13745 1.22066 0.88419 0.88058 1.00000 1.86257 1.10041 1.30904 1.89081 1.22399 0.81957 0.93492 1.04817 1.19478 0.82503 0.88356 0.77097 1.90733 1.84933 1.15149 1.49826 1.50056 1.03776 1.11220 1.72446 1.23289 0.77935 0.97871 1.01079 1.22596 0.97240 0.93736 0.96812 1.23375 0.91750 0.83920 1.01414 1.21129 1.00597 0.98181 0.92246 1.22000 1.01172 0.95466 0.98904 1.20850 0.91995 1.00825 0.84105 1.44090 1.81642 1.05210 1.00932 1.19915 1.28199 0.98699 1.01096 0.92636 1.25833 0.92712 1.04504 0.99408 1.70785 1.29984 1.22618 1.31978 0.83553 0.75889 0.76003 0.75297 1.21104 1.22014 1.21987 1.20778 0.91051 0.88458 0.96054 1.74206 0.97883 1.14198 1.27337 1.84806 1.10283 1.31965 1.68995 0.89064 0.89469 0.88777 0.80395 0.88634 0.88641 0.90105 0.89427 0.89029 0.89990 0.91896 0.93114 0.92787 0.92371 0.90134 0.96528 0.91955 0.95818 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.23 10.45 36.01 0.38 0.14 16 2 C -0.01 -0.08 7.48 -35.37 -0.26 -0.34 16 3 C -0.23 -2.25 11.10 -39.23 -0.44 -2.69 16 4 C 0.21 2.79 8.01 -16.65 -0.13 2.65 16 5 O -0.26 -3.85 9.74 -38.75 -0.38 -4.23 16 6 C 0.05 0.71 5.89 36.01 0.21 0.92 16 7 C 0.54 8.56 8.13 -10.98 -0.09 8.47 16 8 O -0.53 -10.28 17.23 -14.36 -0.25 -10.52 16 9 N -0.64 -9.35 3.45 -180.49 -0.62 -9.97 16 10 C 0.12 1.68 7.97 -3.18 -0.03 1.65 16 11 C -0.10 -1.56 0.87 -154.44 -0.13 -1.69 16 12 C 0.12 1.69 7.59 -3.17 -0.02 1.67 16 13 C -0.08 -1.30 5.03 -26.82 -0.13 -1.44 16 14 C -0.14 -2.37 5.99 -26.80 -0.16 -2.54 16 15 C 0.15 3.22 4.62 -3.99 -0.02 3.20 16 16 N -0.60 -13.61 2.86 -172.75 -0.49 -14.10 16 17 C -0.35 -9.10 9.50 -15.06 -0.14 -9.24 16 18 H 0.06 1.44 7.94 -52.49 -0.42 1.03 16 19 C -0.02 -0.60 4.70 -17.43 -0.08 -0.68 16 20 N -0.91 -26.34 12.39 55.49 0.69 -25.65 16 21 Si 1.06 24.30 29.98 -169.99 -5.10 19.20 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.16 3.05 5.71 -3.82 -0.02 3.03 16 26 N -0.41 -5.38 11.54 30.38 0.35 -5.03 16 27 O 0.10 1.09 11.19 17.06 0.19 1.28 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.15 8.14 -51.92 -0.42 -0.27 16 31 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 35 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 36 H 0.09 1.30 7.97 -51.93 -0.41 0.89 16 37 H 0.08 1.17 7.36 -51.93 -0.38 0.79 16 38 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.05 0.75 8.02 -51.93 -0.42 0.34 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.04 7.36 -51.93 -0.38 0.66 16 42 H 0.08 2.01 6.24 -51.93 -0.32 1.68 16 43 H 0.02 0.37 7.93 -51.93 -0.41 -0.04 16 44 H 0.27 7.81 6.74 -40.82 -0.28 7.54 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.11 7.78 -51.93 -0.40 0.71 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -33.10 379.44 -7.84 -40.94 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.87 Total: -0.75 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.08 Total: 3.13 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.08 Total: -54.76 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.43 Total: -13.47 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.10 Total: 19.20 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.10 -7.84 -40.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981823939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.767 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds