Wall clock time and date at job start Tue Mar 31 2020 19:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35272 * 126.70278 * 2 1 4 4 C 1.41931 * 103.95520 * 180.10789 * 3 2 1 5 5 O 1.35714 * 126.87917 * 179.91517 * 4 3 2 6 6 C 1.42899 * 117.00258 * 179.70909 * 5 4 3 7 7 C 1.50700 * 109.47143 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27800 * 7 6 5 10 10 C 1.49615 * 126.07422 * 359.41076 * 9 7 6 11 11 C 1.51778 * 102.37125 * 154.28859 * 10 9 7 12 12 H 1.08999 * 111.74643 * 288.26583 * 11 10 9 13 13 C 1.51557 * 123.23272 * 151.79190 * 11 10 9 14 14 C 1.56337 * 101.81492 * 208.18050 * 13 11 10 15 15 C 1.54830 * 105.55732 * 24.66539 * 14 13 11 16 16 H 1.09006 * 110.48268 * 249.24962 * 15 14 13 17 17 N 1.46497 * 110.02050 * 126.88047 * 15 14 13 18 18 C 1.36944 * 120.00369 * 90.03106 * 17 15 14 19 19 H 1.08000 * 119.99684 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00268 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00332 * 179.97438 * 20 18 17 22 22 Si 1.86810 * 119.99806 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47415 * 89.99451 * 22 20 18 24 24 H 1.48499 * 109.46707 * 210.00044 * 22 20 18 25 25 H 1.48503 * 109.47047 * 329.99424 * 22 20 18 26 26 C 1.49701 * 104.56295 * 8.18171 * 15 14 13 27 27 H 1.09003 * 108.54949 * 76.53068 * 26 15 14 28 28 C 1.49287 * 126.06846 * 179.72875 * 9 7 6 29 29 N 1.30619 * 106.24362 * 359.64592 * 4 3 2 30 30 O 1.20912 * 111.49462 * 0.22946 * 29 4 3 31 31 H 1.09004 * 109.46979 * 180.25968 * 1 2 3 32 32 H 1.08998 * 109.47832 * 300.25906 * 1 2 3 33 33 H 1.08995 * 109.47418 * 60.26482 * 1 2 3 34 34 H 1.08001 * 128.02256 * 359.97438 * 3 2 1 35 35 H 1.09009 * 109.46798 * 59.99487 * 6 5 4 36 36 H 1.08998 * 109.46844 * 299.99991 * 6 5 4 37 37 H 1.09004 * 110.80650 * 272.62289 * 10 9 7 38 38 H 1.09004 * 110.80720 * 36.12224 * 10 9 7 39 39 H 1.09001 * 110.96261 * 326.31256 * 13 11 10 40 40 H 1.09003 * 110.96121 * 90.01338 * 13 11 10 41 41 H 1.08999 * 110.19187 * 144.51691 * 14 13 11 42 42 H 1.09004 * 110.18887 * 266.36338 * 14 13 11 43 43 H 0.96997 * 120.00316 * 270.03081 * 17 15 14 44 44 H 0.97000 * 120.00362 * 180.02562 * 21 20 18 45 45 H 1.09006 * 110.39223 * 292.38542 * 28 9 7 46 46 H 1.08995 * 110.40082 * 54.67298 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6244 0.5357 -0.0026 5 8 4.7953 1.2219 -0.0052 6 6 5.9988 0.4516 -0.0011 7 6 7.1879 1.3774 -0.0054 8 8 7.0210 2.5787 -0.0119 9 7 8.4366 0.8703 -0.0082 10 6 8.7980 -0.5815 0.0049 11 6 10.1685 -0.5813 -0.6474 12 1 10.1070 -0.3760 -1.7161 13 6 11.2293 -1.6225 -0.3515 14 6 12.5459 -0.8230 -0.6186 15 6 12.1763 0.6664 -0.4127 16 1 12.1952 1.1990 -1.3636 17 7 13.0991 1.2849 0.5423 18 6 14.2508 1.8766 0.0965 19 1 14.4786 1.8878 -0.9591 20 6 15.1250 2.4631 1.0014 21 7 16.2321 3.0314 0.5731 22 14 14.7306 2.4444 2.8273 23 1 15.3040 1.2219 3.4452 24 1 15.3165 3.6468 3.4725 25 1 13.2576 2.4499 3.0156 26 6 10.7871 0.6360 0.1442 27 1 10.8410 0.3526 1.1954 28 6 9.7049 1.6577 -0.0183 29 7 3.4765 -0.7620 0.0039 30 8 2.3085 -1.0748 0.0054 31 1 -0.3633 -1.0277 0.0047 32 1 -0.3635 0.5178 0.8876 33 1 -0.3634 0.5097 -0.8923 34 1 2.0310 2.1264 -0.0004 35 1 6.0281 -0.1813 -0.8881 36 1 6.0273 -0.1729 0.8918 37 1 8.8530 -0.9575 1.0266 38 1 8.0889 -1.1624 -0.5849 39 1 11.1756 -1.9497 0.6869 40 1 11.1431 -2.4709 -1.0304 41 1 13.3223 -1.1320 0.0813 42 1 12.8794 -0.9793 -1.6445 43 1 12.8944 1.2752 1.4903 44 1 16.8432 3.4409 1.2054 45 1 9.8181 2.1834 -0.9665 46 1 9.7199 2.3646 0.8112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026286348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:38 Heat of formation + Delta-G solvation = 35.144562 kcal Electronic energy + Delta-G solvation = -28356.458044 eV Core-core repulsion = 24251.528292 eV Total energy + Delta-G solvation = -4104.929752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.27701 -40.82163 -39.61249 -38.23906 -35.57815 -34.26171 -33.52186 -32.92760 -31.22189 -30.64300 -28.90338 -28.52364 -27.87740 -25.68852 -23.79829 -23.46506 -22.60028 -21.68659 -20.42310 -19.56199 -19.32180 -18.28992 -18.23925 -17.61290 -17.29696 -16.86942 -16.54311 -16.24787 -15.30639 -15.02847 -14.76102 -14.37710 -14.30406 -14.20536 -13.83256 -13.70303 -13.66081 -13.54935 -12.97732 -12.90523 -12.74619 -12.53767 -12.19819 -12.06046 -11.89694 -11.65828 -11.50903 -11.20414 -10.94417 -10.86203 -10.57660 -10.43475 -10.11836 -10.00033 -9.92736 -9.85373 -9.59995 -9.58618 -8.97265 -8.84628 -7.31985 -5.79986 -3.16309 1.00391 1.88411 1.91250 2.36549 2.66652 2.98929 3.35233 3.37785 3.43732 3.78470 3.89930 4.17252 4.35787 4.52132 4.56109 4.60393 4.68265 4.73225 4.77024 4.85816 4.85898 5.09048 5.10512 5.13159 5.22399 5.23809 5.42214 5.47221 5.48768 5.55095 5.62585 5.73403 5.78237 5.87043 5.97176 5.99305 6.12225 6.18286 6.31624 6.45488 6.58670 6.66176 6.88284 7.24864 7.83609 7.91429 7.95392 8.38879 9.16433 9.88979 10.07874 11.38164 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024830 B = 0.002064 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.378695 B =13559.963152 C =14149.800034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.008 4.008 3 C -0.233 4.233 4 C 0.214 3.786 5 O -0.256 6.256 6 C 0.052 3.948 7 C 0.531 3.469 8 O -0.519 6.519 9 N -0.622 5.622 10 C 0.112 3.888 11 C -0.125 4.125 12 H 0.091 0.909 13 C -0.102 4.102 14 C -0.140 4.140 15 C 0.203 3.797 16 H 0.065 0.935 17 N -0.745 5.745 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.932 5.932 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.125 4.125 27 H 0.075 0.925 28 C 0.136 3.864 29 N -0.412 5.412 30 O 0.098 5.902 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.179 0.821 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.361 0.639 44 H 0.260 0.740 45 H 0.075 0.925 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.766 -11.712 -1.830 32.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.255 4.255 4 C 0.016 3.984 5 O -0.161 6.161 6 C -0.027 4.027 7 C 0.318 3.682 8 O -0.394 6.394 9 N -0.359 5.359 10 C -0.010 4.010 11 C -0.145 4.145 12 H 0.110 0.890 13 C -0.140 4.140 14 C -0.181 4.181 15 C 0.093 3.907 16 H 0.083 0.917 17 N -0.387 5.387 18 C -0.376 4.376 19 H 0.109 0.891 20 C -0.190 4.190 21 N -0.580 5.580 22 Si 0.713 3.287 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.145 4.145 27 H 0.093 0.907 28 C 0.016 3.984 29 N -0.140 5.140 30 O 0.038 5.962 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.197 0.803 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.194 0.806 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.826 -11.594 -1.958 32.060 hybrid contribution -0.230 0.624 1.400 1.550 sum -30.055 -10.970 -0.558 32.000 Atomic orbital electron populations 1.20396 0.83419 1.04994 1.04483 1.24361 0.96513 0.85537 1.00790 1.21806 0.88247 1.01818 1.13601 1.22062 0.88411 0.88044 0.99866 1.86283 1.10007 1.30809 1.89034 1.22451 0.82133 0.93459 1.04641 1.19459 0.82551 0.88588 0.77632 1.90778 1.84812 1.15041 1.48771 1.49746 1.04783 1.08150 1.73180 1.21946 0.96909 0.80958 1.01160 1.22641 0.93048 0.98320 1.00499 0.89022 1.21900 0.94378 0.96467 1.01269 1.23553 0.96204 0.96543 1.01803 1.19749 0.85183 0.92020 0.93777 0.91700 1.42870 1.23167 1.68523 1.04168 1.19080 0.95131 1.28485 0.94863 0.89126 1.24670 0.96709 1.00220 0.97369 1.69694 1.12139 1.42571 1.33566 0.86575 0.77609 0.77359 0.87115 1.21111 1.21733 1.20368 1.22149 0.95912 0.95201 1.01255 0.90687 1.21014 0.80781 0.93536 1.03055 1.74161 0.97979 1.14172 1.27663 1.84793 1.10285 1.32010 1.69077 0.89558 0.88805 0.88801 0.80321 0.88618 0.88646 0.90447 0.90417 0.91524 0.91829 0.90532 0.92127 0.80562 0.93029 0.90657 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.16 10.45 36.01 0.38 0.22 16 2 C -0.01 -0.06 7.48 -35.36 -0.26 -0.32 16 3 C -0.23 -1.98 11.11 -39.23 -0.44 -2.42 16 4 C 0.21 2.48 8.01 -16.65 -0.13 2.34 16 5 O -0.26 -3.44 9.74 -38.76 -0.38 -3.82 16 6 C 0.05 0.59 5.19 36.01 0.19 0.78 16 7 C 0.53 7.65 7.95 -10.98 -0.09 7.56 16 8 O -0.52 -9.70 16.86 -14.36 -0.24 -9.94 16 9 N -0.62 -8.07 3.42 -171.42 -0.59 -8.65 16 10 C 0.11 1.10 6.50 -2.93 -0.02 1.08 16 11 C -0.13 -1.40 3.14 -89.32 -0.28 -1.68 16 12 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 13 C -0.10 -1.14 6.61 -25.67 -0.17 -1.31 16 14 C -0.14 -2.12 6.68 -23.97 -0.16 -2.28 16 15 C 0.20 3.57 3.37 -68.60 -0.23 3.34 16 16 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 17 N -0.75 -16.74 4.87 -54.08 -0.26 -17.00 16 18 C -0.25 -6.72 10.44 -15.06 -0.16 -6.88 16 19 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -28.97 13.97 55.49 0.78 -28.19 16 22 Si 0.88 21.89 27.74 -169.99 -4.71 17.17 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 26 C -0.13 -1.81 2.23 -91.23 -0.20 -2.01 16 27 H 0.07 1.11 7.78 -51.93 -0.40 0.71 16 28 C 0.14 2.02 6.82 -4.12 -0.03 1.99 16 29 N -0.41 -4.62 11.54 30.38 0.35 -4.27 16 30 O 0.10 0.91 11.19 17.09 0.19 1.10 16 31 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 33 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.18 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.10 0.92 7.91 -51.92 -0.41 0.51 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.59 7.57 -51.93 -0.39 0.20 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.31 7.98 -51.93 -0.41 0.89 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.36 8.06 5.54 -40.82 -0.23 7.84 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -35.15 380.39 -7.77 -42.92 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.93 Total: 4.46 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.70 Total: 0.50 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.28 Total: -58.12 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.43 Total: -12.66 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.15 -7.77 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.065 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds