Wall clock time and date at job start Tue Mar 31 2020 19:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35272 * 126.70278 * 2 1 4 4 C 1.41931 * 103.95520 * 180.10789 * 3 2 1 5 5 O 1.35714 * 126.87917 * 179.91517 * 4 3 2 6 6 C 1.42899 * 117.00258 * 179.70909 * 5 4 3 7 7 C 1.50700 * 109.47143 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27800 * 7 6 5 10 10 C 1.49615 * 126.07422 * 359.41076 * 9 7 6 11 11 C 1.51778 * 102.37125 * 154.28859 * 10 9 7 12 12 H 1.08999 * 111.74643 * 288.26583 * 11 10 9 13 13 C 1.51557 * 123.23272 * 151.79190 * 11 10 9 14 14 C 1.56337 * 101.81492 * 208.18050 * 13 11 10 15 15 C 1.54830 * 105.55732 * 24.66539 * 14 13 11 16 16 H 1.09006 * 110.48268 * 249.24962 * 15 14 13 17 17 N 1.46497 * 110.02050 * 126.88047 * 15 14 13 18 18 C 1.36944 * 120.00369 * 90.03106 * 17 15 14 19 19 H 1.08000 * 119.99684 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00268 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00332 * 179.97438 * 20 18 17 22 22 Si 1.86810 * 119.99806 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47415 * 89.99451 * 22 20 18 24 24 H 1.48499 * 109.46707 * 210.00044 * 22 20 18 25 25 H 1.48503 * 109.47047 * 329.99424 * 22 20 18 26 26 C 1.49701 * 104.56295 * 8.18171 * 15 14 13 27 27 H 1.09003 * 108.54949 * 76.53068 * 26 15 14 28 28 C 1.49287 * 126.06846 * 179.72875 * 9 7 6 29 29 N 1.30619 * 106.24362 * 359.64592 * 4 3 2 30 30 O 1.20912 * 111.49462 * 0.22946 * 29 4 3 31 31 H 1.09004 * 109.46979 * 180.25968 * 1 2 3 32 32 H 1.08998 * 109.47832 * 300.25906 * 1 2 3 33 33 H 1.08995 * 109.47418 * 60.26482 * 1 2 3 34 34 H 1.08001 * 128.02256 * 359.97438 * 3 2 1 35 35 H 1.09009 * 109.46798 * 59.99487 * 6 5 4 36 36 H 1.08998 * 109.46844 * 299.99991 * 6 5 4 37 37 H 1.09004 * 110.80650 * 272.62289 * 10 9 7 38 38 H 1.09004 * 110.80720 * 36.12224 * 10 9 7 39 39 H 1.09001 * 110.96261 * 326.31256 * 13 11 10 40 40 H 1.09003 * 110.96121 * 90.01338 * 13 11 10 41 41 H 1.08999 * 110.19187 * 144.51691 * 14 13 11 42 42 H 1.09004 * 110.18887 * 266.36338 * 14 13 11 43 43 H 0.96997 * 120.00316 * 270.03081 * 17 15 14 44 44 H 0.97000 * 120.00362 * 180.02562 * 21 20 18 45 45 H 1.09006 * 110.39223 * 292.38542 * 28 9 7 46 46 H 1.08995 * 110.40082 * 54.67298 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6244 0.5357 -0.0026 5 8 4.7953 1.2219 -0.0052 6 6 5.9988 0.4516 -0.0011 7 6 7.1879 1.3774 -0.0054 8 8 7.0210 2.5787 -0.0119 9 7 8.4366 0.8703 -0.0082 10 6 8.7980 -0.5815 0.0049 11 6 10.1685 -0.5813 -0.6474 12 1 10.1070 -0.3760 -1.7161 13 6 11.2293 -1.6225 -0.3515 14 6 12.5459 -0.8230 -0.6186 15 6 12.1763 0.6664 -0.4127 16 1 12.1952 1.1990 -1.3636 17 7 13.0991 1.2849 0.5423 18 6 14.2508 1.8766 0.0965 19 1 14.4786 1.8878 -0.9591 20 6 15.1250 2.4631 1.0014 21 7 16.2321 3.0314 0.5731 22 14 14.7306 2.4444 2.8273 23 1 15.3040 1.2219 3.4452 24 1 15.3165 3.6468 3.4725 25 1 13.2576 2.4499 3.0156 26 6 10.7871 0.6360 0.1442 27 1 10.8410 0.3526 1.1954 28 6 9.7049 1.6577 -0.0183 29 7 3.4765 -0.7620 0.0039 30 8 2.3085 -1.0748 0.0054 31 1 -0.3633 -1.0277 0.0047 32 1 -0.3635 0.5178 0.8876 33 1 -0.3634 0.5097 -0.8923 34 1 2.0310 2.1264 -0.0004 35 1 6.0281 -0.1813 -0.8881 36 1 6.0273 -0.1729 0.8918 37 1 8.8530 -0.9575 1.0266 38 1 8.0889 -1.1624 -0.5849 39 1 11.1756 -1.9497 0.6869 40 1 11.1431 -2.4709 -1.0304 41 1 13.3223 -1.1320 0.0813 42 1 12.8794 -0.9793 -1.6445 43 1 12.8944 1.2752 1.4903 44 1 16.8432 3.4409 1.2054 45 1 9.8181 2.1834 -0.9665 46 1 9.7199 2.3646 0.8112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026286348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:37 Heat of formation + Delta-G solvation = 10.163334 kcal Electronic energy + Delta-G solvation = -28357.541311 eV Core-core repulsion = 24251.528292 eV Total energy + Delta-G solvation = -4106.013019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.96322 -41.92053 -40.62115 -39.31457 -37.00046 -35.18338 -34.79192 -33.59881 -33.09554 -31.75368 -30.18469 -29.27401 -28.50040 -27.09007 -24.67782 -24.49616 -24.31747 -22.43751 -21.57742 -20.63521 -20.57343 -19.57786 -18.96085 -18.95376 -18.17542 -17.81523 -17.52395 -17.31127 -16.66111 -16.30734 -15.98806 -15.90113 -15.09023 -14.97748 -14.90823 -14.79178 -14.52500 -14.34633 -14.20848 -13.92073 -13.73073 -13.49097 -13.30239 -13.23986 -13.11825 -12.89855 -12.67521 -12.36420 -12.31025 -12.18619 -12.13045 -11.86300 -11.64076 -11.42296 -11.17042 -11.07843 -10.94449 -10.52936 -10.29594 -9.94236 -9.31207 -8.02921 -5.35679 0.42573 1.00927 1.16426 1.28108 1.35582 1.38781 1.45701 1.98215 2.27134 2.46895 2.85759 3.07160 3.22373 3.29462 3.47366 3.79044 3.81453 3.82860 3.88876 3.89931 3.97878 4.14790 4.23252 4.36556 4.37207 4.41352 4.50182 4.59538 4.62503 4.72664 4.76515 4.79645 4.85809 4.88669 4.89917 4.90986 5.08701 5.22576 5.27451 5.31218 5.50006 5.52325 5.78032 5.78530 6.21460 6.21874 6.81180 7.07474 7.19089 7.84104 8.02131 9.18674 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024830 B = 0.002064 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.378695 B =13559.963152 C =14149.800034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.012 3.988 3 C -0.253 4.253 4 C 0.190 3.810 5 O -0.283 6.283 6 C 0.060 3.940 7 C 0.528 3.472 8 O -0.574 6.574 9 N -0.616 5.616 10 C 0.113 3.887 11 C -0.105 4.105 12 H 0.093 0.907 13 C -0.085 4.085 14 C -0.138 4.138 15 C 0.192 3.808 16 H 0.046 0.954 17 N -0.749 5.749 18 C -0.226 4.226 19 H 0.057 0.943 20 C -0.065 4.065 21 N -0.984 5.984 22 Si 0.953 3.047 23 H -0.276 1.276 24 H -0.300 1.300 25 H -0.256 1.256 26 C -0.128 4.128 27 H 0.079 0.921 28 C 0.136 3.864 29 N -0.428 5.428 30 O 0.093 5.907 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.194 0.806 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.364 0.636 44 H 0.256 0.744 45 H 0.062 0.938 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.439 -14.689 -0.983 37.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.051 4.051 3 C -0.275 4.275 4 C -0.007 4.007 5 O -0.189 6.189 6 C -0.018 4.018 7 C 0.317 3.683 8 O -0.453 6.453 9 N -0.352 5.352 10 C -0.007 4.007 11 C -0.125 4.125 12 H 0.112 0.888 13 C -0.123 4.123 14 C -0.178 4.178 15 C 0.084 3.916 16 H 0.064 0.936 17 N -0.392 5.392 18 C -0.357 4.357 19 H 0.075 0.925 20 C -0.256 4.256 21 N -0.635 5.635 22 Si 0.781 3.219 23 H -0.202 1.202 24 H -0.227 1.227 25 H -0.180 1.180 26 C -0.148 4.148 27 H 0.097 0.903 28 C 0.015 3.985 29 N -0.156 5.156 30 O 0.033 5.967 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.211 0.789 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.198 0.802 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -33.555 -14.661 -1.129 36.636 hybrid contribution 0.836 1.544 0.994 2.018 sum -32.719 -13.117 -0.134 35.251 Atomic orbital electron populations 1.20685 0.79908 1.06494 1.06110 1.25118 0.98028 0.84059 0.97924 1.22155 0.87431 1.03183 1.14734 1.22427 0.88538 0.88674 1.01092 1.86229 1.10997 1.32156 1.89553 1.22452 0.80408 0.92406 1.06504 1.20051 0.83510 0.88338 0.76445 1.90748 1.85656 1.17500 1.51375 1.49748 1.03769 1.09514 1.72151 1.22220 0.96505 0.79016 1.02922 1.22627 0.93553 0.96010 1.00283 0.88823 1.21809 0.91144 0.96463 1.02915 1.23369 0.98183 0.94837 1.01397 1.20017 0.86245 0.93160 0.92171 0.93623 1.42888 1.22510 1.68696 1.05149 1.19044 0.96306 1.27029 0.93368 0.92481 1.25470 0.96844 1.00923 1.02368 1.69878 1.13756 1.44781 1.35095 0.85442 0.78505 0.77027 0.80969 1.20160 1.22716 1.18044 1.21906 0.94062 0.96994 1.01850 0.90275 1.20841 0.82306 0.93766 1.01586 1.74131 0.99054 1.14051 1.28365 1.84749 1.10090 1.32879 1.68955 0.88144 0.87027 0.87004 0.78928 0.86474 0.86663 0.88446 0.86921 0.90174 0.88935 0.92457 0.91996 0.80209 0.93478 0.91986 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.05 10.45 71.24 0.74 0.69 16 2 C 0.01 0.14 7.48 25.00 0.19 0.32 16 3 C -0.25 -3.97 11.11 22.50 0.25 -3.72 16 4 C 0.19 4.21 8.01 85.79 0.69 4.89 16 5 O -0.28 -7.47 9.74 -71.31 -0.69 -8.16 16 6 C 0.06 1.27 5.19 71.24 0.37 1.64 16 7 C 0.53 14.80 7.95 87.66 0.70 15.49 16 8 O -0.57 -21.99 16.86 16.00 0.27 -21.72 16 9 N -0.62 -14.96 3.42 -814.64 -2.79 -17.75 16 10 C 0.11 1.75 6.50 85.37 0.55 2.31 16 11 C -0.11 -1.99 3.14 -9.95 -0.03 -2.02 16 12 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 13 C -0.09 -1.57 6.61 31.28 0.21 -1.37 16 14 C -0.14 -3.97 6.68 32.38 0.22 -3.75 16 15 C 0.19 6.75 3.37 44.56 0.15 6.90 16 16 H 0.05 1.75 8.09 -2.38 -0.02 1.74 16 17 N -0.75 -33.88 4.87 -325.00 -1.58 -35.46 16 18 C -0.23 -12.77 10.44 84.03 0.88 -11.89 16 19 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 20 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 21 N -0.98 -63.52 13.97 21.65 0.30 -63.22 16 22 Si 0.95 45.88 27.74 68.60 1.90 47.78 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 25 H -0.26 -11.22 6.52 99.48 0.65 -10.57 16 26 C -0.13 -3.54 2.23 -11.19 -0.02 -3.56 16 27 H 0.08 2.17 7.78 -2.39 -0.02 2.15 16 28 C 0.14 4.04 6.82 84.78 0.58 4.61 16 29 N -0.43 -8.92 11.54 -172.60 -1.99 -10.92 16 30 O 0.09 1.54 11.19 71.32 0.80 2.34 16 31 H 0.10 -0.15 8.14 -2.38 -0.02 -0.17 16 32 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.12 1.93 7.91 -2.38 -0.02 1.91 16 36 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.08 7.57 -2.38 -0.02 1.06 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.89 7.98 -2.39 -0.02 1.87 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.36 15.95 5.54 -92.71 -0.51 15.43 16 44 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 45 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 46 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -81.90 380.39 2.57 -79.34 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.42 Total: 20.59 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.93 Total: 7.18 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -6.06 Total: -127.35 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: 0.37 Total: -27.55 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.78 kcal Total: -81.90 2.57 -79.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.500 kcal (2) G-P(sol) polarization free energy of solvation -81.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds