Wall clock time and date at job start Tue Mar 31 2020 19:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35275 * 126.71210 * 2 1 4 4 C 1.41929 * 103.96325 * 180.10894 * 3 2 1 5 5 O 1.35703 * 126.87995 * 179.90950 * 4 3 2 6 6 C 1.42906 * 117.00129 * 179.70852 * 5 4 3 7 7 C 1.50703 * 109.47095 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00258 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99789 * 180.02562 * 7 6 5 10 10 C 1.47214 * 126.70478 * 0.03085 * 9 7 6 11 11 C 1.53771 * 106.38201 * 148.71775 * 10 9 7 12 12 H 1.08999 * 111.70786 * 257.23023 * 11 10 9 13 13 C 1.54325 * 109.06760 * 132.42703 * 11 10 9 14 14 C 1.55185 * 104.03368 * 222.13228 * 13 11 10 15 15 C 1.55050 * 102.04874 * 39.86624 * 14 13 11 16 16 H 1.09000 * 110.53672 * 78.80977 * 15 14 13 17 17 N 1.46506 * 110.53902 * 201.44435 * 15 14 13 18 18 C 1.36929 * 119.99807 * 271.63219 * 17 15 14 19 19 H 1.08004 * 120.00341 * 0.27647 * 18 17 15 20 20 C 1.38815 * 120.00031 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00489 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00506 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00336 * 22 20 18 26 26 C 1.54323 * 104.06337 * 320.12672 * 15 14 13 27 27 H 1.08999 * 111.69352 * 262.72657 * 26 15 14 28 28 C 1.47213 * 126.70058 * 180.02562 * 9 7 6 29 29 N 1.30624 * 106.24035 * 359.64939 * 4 3 2 30 30 O 1.20913 * 111.49799 * 0.22292 * 29 4 3 31 31 H 1.09002 * 109.47421 * 180.25956 * 1 2 3 32 32 H 1.09002 * 109.47367 * 300.26474 * 1 2 3 33 33 H 1.09002 * 109.47271 * 60.26123 * 1 2 3 34 34 H 1.07997 * 128.01783 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.46480 * 60.00305 * 6 5 4 36 36 H 1.08993 * 109.47229 * 300.00334 * 6 5 4 37 37 H 1.08998 * 110.07544 * 29.47983 * 10 9 7 38 38 H 1.09006 * 110.11796 * 267.97114 * 10 9 7 39 39 H 1.09006 * 110.53139 * 340.64718 * 13 11 10 40 40 H 1.08998 * 110.53480 * 103.27136 * 13 11 10 41 41 H 1.08999 * 110.83760 * 281.72839 * 14 13 11 42 42 H 1.09002 * 111.03299 * 158.09462 * 14 13 11 43 43 H 0.96999 * 120.00076 * 91.63282 * 17 15 14 44 44 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 45 45 H 1.08999 * 110.07520 * 92.05533 * 28 9 7 46 46 H 1.08998 * 110.07349 * 330.51075 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5356 -0.0026 5 8 4.7953 1.2217 -0.0053 6 6 5.9988 0.4512 -0.0012 7 6 7.1880 1.3770 -0.0057 8 8 7.0213 2.5783 -0.0113 9 7 8.4366 0.8700 -0.0034 10 6 8.8078 -0.5546 0.0027 11 6 10.1374 -0.6596 -0.7627 12 1 9.9917 -1.0413 -1.7733 13 6 11.1226 -1.5220 0.0541 14 6 12.4737 -0.7686 -0.0693 15 6 12.0300 0.7126 0.0447 16 1 11.8465 0.9777 1.0859 17 7 13.0404 1.5983 -0.5392 18 6 14.0699 2.0656 0.2333 19 1 14.1396 1.7776 1.2719 20 6 15.0276 2.9043 -0.3201 21 7 14.9458 3.2509 -1.5872 22 14 16.4325 3.5412 0.7336 23 1 17.5755 2.5961 0.6583 24 1 16.8588 4.8742 0.2371 25 1 15.9801 3.6595 2.1430 26 6 10.7201 0.7754 -0.7688 27 1 10.8922 1.1376 -1.7823 28 6 9.6959 1.6325 -0.0065 29 7 3.4764 -0.7622 0.0038 30 8 2.3084 -1.0750 0.0054 31 1 -0.3634 -1.0277 0.0047 32 1 -0.3634 0.5179 0.8876 33 1 -0.3634 0.5098 -0.8923 34 1 2.0312 2.1263 -0.0004 35 1 6.0281 -0.1815 -0.8883 36 1 6.0274 -0.1732 0.8917 37 1 8.0398 -1.1435 -0.4987 38 1 8.9373 -0.9040 1.0271 39 1 10.8107 -1.5745 1.0973 40 1 11.1990 -2.5224 -0.3718 41 1 12.9386 -0.9620 -1.0361 42 1 13.1470 -1.0368 0.7449 43 1 12.9801 1.8537 -1.4730 44 1 15.6148 3.8373 -1.9738 45 1 10.0348 1.7994 1.0159 46 1 9.5543 2.5864 -0.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026286351.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:49 Heat of formation + Delta-G solvation = 12.052172 kcal Electronic energy + Delta-G solvation = -28316.531199 eV Core-core repulsion = 24210.600087 eV Total energy + Delta-G solvation = -4105.931113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.24337 -40.57520 -39.37609 -38.07447 -35.28694 -34.23224 -33.42600 -32.89395 -31.09580 -30.39811 -28.62395 -28.45894 -27.88050 -25.11755 -23.76570 -23.66715 -22.89788 -21.65130 -20.34094 -19.37562 -19.15988 -18.30739 -18.20621 -17.26487 -17.21309 -16.80804 -16.52448 -15.92518 -15.53603 -14.95128 -14.52925 -14.29921 -14.22932 -14.07528 -13.84541 -13.74543 -13.45491 -13.21369 -13.06234 -12.91218 -12.74706 -12.43939 -12.09644 -11.88261 -11.69441 -11.48289 -11.20335 -10.94512 -10.80473 -10.73775 -10.44172 -10.35952 -10.24019 -9.99628 -9.89686 -9.88797 -9.68034 -9.55134 -8.89957 -8.76485 -6.97594 -5.78917 -3.07921 1.03384 1.91745 1.99310 2.40895 2.70948 3.14355 3.42481 3.47979 3.49573 3.82017 4.15734 4.38618 4.48137 4.55332 4.58347 4.66556 4.71991 4.76168 4.79925 4.83861 4.88188 5.13089 5.20004 5.26696 5.35649 5.37668 5.50381 5.52144 5.56226 5.71546 5.78951 5.89694 5.91502 6.00539 6.13308 6.19159 6.25250 6.34867 6.49560 6.59594 6.63591 6.75416 6.99631 7.39207 7.68371 7.87262 7.98276 8.39367 9.50738 10.07563 10.41597 11.43533 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027699 B = 0.001971 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.627465 B =14204.496292 C =14895.630433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 C -0.233 4.233 4 C 0.214 3.786 5 O -0.256 6.256 6 C 0.052 3.948 7 C 0.532 3.468 8 O -0.519 6.519 9 N -0.613 5.613 10 C 0.100 3.900 11 C -0.099 4.099 12 H 0.087 0.913 13 C -0.116 4.116 14 C -0.143 4.143 15 C 0.184 3.816 16 H 0.057 0.943 17 N -0.720 5.720 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.106 4.106 27 H 0.091 0.909 28 C 0.118 3.882 29 N -0.412 5.412 30 O 0.098 5.902 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.179 0.821 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.076 0.924 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.732 -12.002 2.732 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.255 4.255 4 C 0.016 3.984 5 O -0.161 6.161 6 C -0.027 4.027 7 C 0.319 3.681 8 O -0.394 6.394 9 N -0.348 5.348 10 C -0.023 4.023 11 C -0.119 4.119 12 H 0.106 0.894 13 C -0.154 4.154 14 C -0.183 4.183 15 C 0.073 3.927 16 H 0.075 0.925 17 N -0.360 5.360 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.126 4.126 27 H 0.110 0.890 28 C -0.003 4.003 29 N -0.140 5.140 30 O 0.038 5.962 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.197 0.803 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -26.880 -11.917 2.875 29.544 hybrid contribution 0.748 0.978 0.163 1.242 sum -26.133 -10.939 3.038 28.492 Atomic orbital electron populations 1.20393 0.83439 1.04974 1.04471 1.24358 0.96502 0.85546 1.00836 1.21805 0.88254 1.01815 1.13581 1.22063 0.88429 0.88035 0.99831 1.86284 1.10004 1.30805 1.89008 1.22451 0.82145 0.93477 1.04629 1.19435 0.82493 0.88574 0.77633 1.90776 1.84786 1.15032 1.48778 1.48515 1.04915 1.08692 1.72712 1.22446 0.97433 0.81487 1.00956 1.22570 0.93373 0.96603 0.99345 0.89424 1.22512 0.96084 0.97878 0.98968 1.23322 0.95119 0.98025 1.01872 1.21243 0.86661 0.89549 0.95265 0.92493 1.42434 1.26882 1.55278 1.11427 1.19226 1.01578 1.22749 0.93660 0.91165 1.24744 0.99374 1.00553 0.96154 1.69654 1.36876 1.39864 1.11576 0.86206 0.82541 0.78113 0.79420 1.21743 1.21782 1.20759 1.22921 0.95720 0.93250 1.00740 0.89032 1.22240 0.80970 0.95891 1.01227 1.74162 0.97963 1.14184 1.27681 1.84796 1.10290 1.32007 1.69093 0.89570 0.88817 0.88813 0.80324 0.88630 0.88627 0.91003 0.90634 0.91649 0.92068 0.91491 0.92031 0.78161 0.93479 0.90625 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.17 10.45 36.00 0.38 0.20 16 2 C -0.01 -0.06 7.48 -35.37 -0.26 -0.33 16 3 C -0.23 -2.05 11.10 -39.23 -0.44 -2.48 16 4 C 0.21 2.55 8.01 -16.65 -0.13 2.41 16 5 O -0.26 -3.54 9.74 -38.72 -0.38 -3.91 16 6 C 0.05 0.62 5.12 36.01 0.18 0.80 16 7 C 0.53 7.99 7.95 -10.99 -0.09 7.90 16 8 O -0.52 -10.03 16.73 -14.35 -0.24 -10.27 16 9 N -0.61 -8.41 3.32 -171.59 -0.57 -8.98 16 10 C 0.10 1.05 6.38 -3.25 -0.02 1.03 16 11 C -0.10 -1.19 3.91 -88.53 -0.35 -1.54 16 12 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 13 C -0.12 -1.38 6.35 -24.88 -0.16 -1.54 16 14 C -0.14 -2.31 6.61 -24.49 -0.16 -2.47 16 15 C 0.18 3.40 3.02 -66.15 -0.20 3.20 16 16 H 0.06 1.09 7.14 -51.93 -0.37 0.71 16 17 N -0.72 -17.34 5.22 -51.70 -0.27 -17.61 16 18 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 C -0.11 -1.65 3.60 -88.53 -0.32 -1.96 16 27 H 0.09 1.54 7.79 -51.93 -0.40 1.13 16 28 C 0.12 1.86 6.54 -3.25 -0.02 1.84 16 29 N -0.41 -4.74 11.54 30.38 0.35 -4.39 16 30 O 0.10 0.93 11.19 17.05 0.19 1.12 16 31 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 33 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.10 0.98 7.86 -51.93 -0.41 0.57 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.60 7.31 -51.93 -0.38 0.22 16 38 H 0.08 0.72 7.13 -51.93 -0.37 0.35 16 39 H 0.06 0.71 7.19 -51.93 -0.37 0.34 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.38 9.91 7.59 -40.82 -0.31 9.60 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 45 H 0.08 1.22 7.13 -51.93 -0.37 0.85 16 46 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -34.29 380.05 -8.07 -42.36 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.75 Total: 5.91 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.83 Total: -0.05 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.24 Total: -58.14 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.43 Total: -13.06 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.29 -8.07 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286351.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.413 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds