Wall clock time and date at job start Tue Mar 31 2020 19:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35275 * 126.71210 * 2 1 4 4 C 1.41929 * 103.96325 * 180.10894 * 3 2 1 5 5 O 1.35703 * 126.87995 * 179.90950 * 4 3 2 6 6 C 1.42906 * 117.00129 * 179.70852 * 5 4 3 7 7 C 1.50703 * 109.47095 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00258 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99789 * 180.02562 * 7 6 5 10 10 C 1.47214 * 126.70478 * 0.03085 * 9 7 6 11 11 C 1.53771 * 106.38201 * 148.71775 * 10 9 7 12 12 H 1.08999 * 111.70786 * 257.23023 * 11 10 9 13 13 C 1.54325 * 109.06760 * 132.42703 * 11 10 9 14 14 C 1.55185 * 104.03368 * 222.13228 * 13 11 10 15 15 C 1.55050 * 102.04874 * 39.86624 * 14 13 11 16 16 H 1.09000 * 110.53672 * 78.80977 * 15 14 13 17 17 N 1.46506 * 110.53902 * 201.44435 * 15 14 13 18 18 C 1.36929 * 119.99807 * 271.63219 * 17 15 14 19 19 H 1.08004 * 120.00341 * 0.27647 * 18 17 15 20 20 C 1.38815 * 120.00031 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00489 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00506 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00336 * 22 20 18 26 26 C 1.54323 * 104.06337 * 320.12672 * 15 14 13 27 27 H 1.08999 * 111.69352 * 262.72657 * 26 15 14 28 28 C 1.47213 * 126.70058 * 180.02562 * 9 7 6 29 29 N 1.30624 * 106.24035 * 359.64939 * 4 3 2 30 30 O 1.20913 * 111.49799 * 0.22292 * 29 4 3 31 31 H 1.09002 * 109.47421 * 180.25956 * 1 2 3 32 32 H 1.09002 * 109.47367 * 300.26474 * 1 2 3 33 33 H 1.09002 * 109.47271 * 60.26123 * 1 2 3 34 34 H 1.07997 * 128.01783 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.46480 * 60.00305 * 6 5 4 36 36 H 1.08993 * 109.47229 * 300.00334 * 6 5 4 37 37 H 1.08998 * 110.07544 * 29.47983 * 10 9 7 38 38 H 1.09006 * 110.11796 * 267.97114 * 10 9 7 39 39 H 1.09006 * 110.53139 * 340.64718 * 13 11 10 40 40 H 1.08998 * 110.53480 * 103.27136 * 13 11 10 41 41 H 1.08999 * 110.83760 * 281.72839 * 14 13 11 42 42 H 1.09002 * 111.03299 * 158.09462 * 14 13 11 43 43 H 0.96999 * 120.00076 * 91.63282 * 17 15 14 44 44 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 45 45 H 1.08999 * 110.07520 * 92.05533 * 28 9 7 46 46 H 1.08998 * 110.07349 * 330.51075 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5356 -0.0026 5 8 4.7953 1.2217 -0.0053 6 6 5.9988 0.4512 -0.0012 7 6 7.1880 1.3770 -0.0057 8 8 7.0213 2.5783 -0.0113 9 7 8.4366 0.8700 -0.0034 10 6 8.8078 -0.5546 0.0027 11 6 10.1374 -0.6596 -0.7627 12 1 9.9917 -1.0413 -1.7733 13 6 11.1226 -1.5220 0.0541 14 6 12.4737 -0.7686 -0.0693 15 6 12.0300 0.7126 0.0447 16 1 11.8465 0.9777 1.0859 17 7 13.0404 1.5983 -0.5392 18 6 14.0699 2.0656 0.2333 19 1 14.1396 1.7776 1.2719 20 6 15.0276 2.9043 -0.3201 21 7 14.9458 3.2509 -1.5872 22 14 16.4325 3.5412 0.7336 23 1 17.5755 2.5961 0.6583 24 1 16.8588 4.8742 0.2371 25 1 15.9801 3.6595 2.1430 26 6 10.7201 0.7754 -0.7688 27 1 10.8922 1.1376 -1.7823 28 6 9.6959 1.6325 -0.0065 29 7 3.4764 -0.7622 0.0038 30 8 2.3084 -1.0750 0.0054 31 1 -0.3634 -1.0277 0.0047 32 1 -0.3634 0.5179 0.8876 33 1 -0.3634 0.5098 -0.8923 34 1 2.0312 2.1263 -0.0004 35 1 6.0281 -0.1815 -0.8883 36 1 6.0274 -0.1732 0.8917 37 1 8.0398 -1.1435 -0.4987 38 1 8.9373 -0.9040 1.0271 39 1 10.8107 -1.5745 1.0973 40 1 11.1990 -2.5224 -0.3718 41 1 12.9386 -0.9620 -1.0361 42 1 13.1470 -1.0368 0.7449 43 1 12.9801 1.8537 -1.4730 44 1 15.6148 3.8373 -1.9738 45 1 10.0348 1.7994 1.0159 46 1 9.5543 2.5864 -0.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026286351.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:48 Heat of formation + Delta-G solvation = -11.768082 kcal Electronic energy + Delta-G solvation = -28317.564123 eV Core-core repulsion = 24210.600087 eV Total energy + Delta-G solvation = -4106.964036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.95819 -41.72574 -40.42317 -39.23550 -36.77311 -35.10215 -34.78817 -33.59380 -32.76660 -31.65513 -29.98901 -29.32608 -28.51963 -26.70469 -24.83464 -24.57850 -24.48903 -22.43401 -21.62451 -20.54954 -20.37487 -19.19970 -19.01104 -18.94807 -18.10390 -17.84675 -17.55728 -17.11955 -16.83251 -16.28839 -15.89567 -15.51539 -15.38047 -14.91872 -14.84316 -14.74068 -14.52972 -14.21235 -13.96284 -13.88827 -13.73365 -13.32790 -13.22908 -13.18553 -12.93566 -12.88896 -12.61578 -12.37069 -12.15557 -12.13135 -12.02355 -11.71104 -11.59947 -11.51274 -11.42792 -11.12806 -10.86837 -10.52603 -10.29129 -9.92815 -8.97790 -7.94850 -5.22440 0.43022 1.05932 1.16546 1.26335 1.45861 1.47210 1.55336 2.05260 2.30213 2.55417 3.05575 3.16113 3.38006 3.40274 3.64329 3.68220 3.79585 3.85823 3.89671 3.98288 4.02509 4.15606 4.31566 4.37548 4.43262 4.45208 4.57322 4.62553 4.67153 4.77057 4.80145 4.80800 4.88498 4.90413 5.02101 5.02599 5.09923 5.25087 5.27957 5.38602 5.45934 5.50768 5.61623 5.79114 6.27674 6.29297 6.81936 7.19588 7.33493 8.11049 8.32393 9.28705 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027699 B = 0.001971 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.627465 B =14204.496292 C =14895.630433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.012 3.988 3 C -0.253 4.253 4 C 0.189 3.811 5 O -0.283 6.283 6 C 0.061 3.939 7 C 0.528 3.472 8 O -0.574 6.574 9 N -0.608 5.608 10 C 0.098 3.902 11 C -0.090 4.090 12 H 0.105 0.895 13 C -0.101 4.101 14 C -0.139 4.139 15 C 0.174 3.826 16 H 0.051 0.949 17 N -0.735 5.735 18 C -0.236 4.236 19 H 0.076 0.924 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.969 3.031 23 H -0.286 1.286 24 H -0.299 1.299 25 H -0.270 1.270 26 C -0.101 4.101 27 H 0.073 0.927 28 C 0.122 3.878 29 N -0.428 5.428 30 O 0.094 5.906 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.193 0.807 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.371 0.629 44 H 0.249 0.751 45 H 0.070 0.930 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.236 -14.845 3.816 33.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.051 4.051 3 C -0.275 4.275 4 C -0.008 4.008 5 O -0.189 6.189 6 C -0.017 4.017 7 C 0.317 3.683 8 O -0.453 6.453 9 N -0.342 5.342 10 C -0.023 4.023 11 C -0.109 4.109 12 H 0.123 0.877 13 C -0.139 4.139 14 C -0.179 4.179 15 C 0.065 3.935 16 H 0.069 0.931 17 N -0.374 5.374 18 C -0.368 4.368 19 H 0.094 0.906 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.799 3.201 23 H -0.213 1.213 24 H -0.226 1.226 25 H -0.195 1.195 26 C -0.121 4.121 27 H 0.091 0.909 28 C -0.001 4.001 29 N -0.156 5.156 30 O 0.034 5.966 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.211 0.789 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.203 0.797 44 H 0.058 0.942 45 H 0.088 0.912 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -29.413 -14.849 3.999 33.191 hybrid contribution 1.405 1.826 -0.153 2.309 sum -28.009 -13.023 3.847 31.127 Atomic orbital electron populations 1.20686 0.79879 1.06505 1.06112 1.25122 0.98030 0.84037 0.97922 1.22155 0.87412 1.03197 1.14733 1.22432 0.88528 0.88690 1.01125 1.86229 1.10995 1.32155 1.89552 1.22438 0.80370 0.92346 1.06538 1.20073 0.83466 0.88361 0.76404 1.90746 1.85626 1.17548 1.51390 1.48530 1.03903 1.10002 1.71756 1.22717 0.97434 0.79608 1.02511 1.22584 0.93920 0.93613 1.00813 0.87711 1.22461 0.92638 0.98368 1.00383 1.23143 0.97586 0.96454 1.00725 1.21520 0.86808 0.90093 0.95030 0.93057 1.42644 1.27614 1.56389 1.10750 1.19616 1.01722 1.21420 0.94023 0.90609 1.25527 1.02240 1.01849 0.97361 1.69813 1.37825 1.41217 1.13276 0.85194 0.79669 0.76949 0.78304 1.21336 1.22564 1.19534 1.22734 0.94260 0.96139 0.98965 0.90875 1.22015 0.82446 0.95202 1.00437 1.74132 0.99065 1.14036 1.28355 1.84751 1.10078 1.32872 1.68941 0.88117 0.86993 0.87032 0.78933 0.86580 0.86436 0.87503 0.88473 0.89776 0.89290 0.93123 0.92672 0.79677 0.94193 0.91222 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.09 10.45 71.23 0.74 0.66 16 2 C 0.01 0.14 7.48 25.00 0.19 0.33 16 3 C -0.25 -4.15 11.10 22.50 0.25 -3.90 16 4 C 0.19 4.35 8.01 85.79 0.69 5.04 16 5 O -0.28 -7.77 9.74 -71.20 -0.69 -8.46 16 6 C 0.06 1.36 5.12 71.24 0.36 1.73 16 7 C 0.53 15.73 7.95 87.66 0.70 16.43 16 8 O -0.57 -23.10 16.73 16.00 0.27 -22.83 16 9 N -0.61 -16.03 3.32 -815.17 -2.71 -18.74 16 10 C 0.10 1.71 6.38 86.50 0.55 2.26 16 11 C -0.09 -1.88 3.91 -9.44 -0.04 -1.92 16 12 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 13 C -0.10 -2.02 6.35 31.79 0.20 -1.82 16 14 C -0.14 -4.32 6.61 32.05 0.21 -4.11 16 15 C 0.17 6.48 3.02 46.14 0.14 6.62 16 16 H 0.05 1.96 7.14 -2.39 -0.02 1.95 16 17 N -0.73 -36.54 5.22 -317.50 -1.66 -38.20 16 18 C -0.24 -13.03 9.97 84.04 0.84 -12.19 16 19 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 21 N -0.97 -60.10 13.06 21.65 0.28 -59.81 16 22 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 26 C -0.10 -3.13 3.60 -9.44 -0.03 -3.16 16 27 H 0.07 2.55 7.79 -2.39 -0.02 2.54 16 28 C 0.12 3.93 6.54 86.50 0.57 4.49 16 29 N -0.43 -9.23 11.54 -172.59 -1.99 -11.22 16 30 O 0.09 1.60 11.19 71.18 0.80 2.40 16 31 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.19 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.12 2.09 7.86 -2.38 -0.02 2.07 16 36 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.11 1.22 7.31 -2.39 -0.02 1.20 16 38 H 0.10 1.37 7.13 -2.38 -0.02 1.35 16 39 H 0.08 1.44 7.19 -2.38 -0.02 1.42 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.37 20.09 7.59 -92.71 -0.70 19.39 16 44 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.07 2.32 7.13 -2.39 -0.02 2.30 16 46 H 0.05 1.94 7.92 -2.39 -0.02 1.92 16 Total: -1.00 -79.40 380.05 2.46 -76.94 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.30 Total: 24.76 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 5.83 Total: 6.44 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -6.07 Total: -127.97 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: 0.37 Total: -28.89 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -79.40 2.46 -76.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286351.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.172 kcal (2) G-P(sol) polarization free energy of solvation -79.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds