Wall clock time and date at job start Tue Mar 31 2020 19:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30019 * 127.33445 * 2 1 4 4 O 1.20655 * 112.30298 * 180.02562 * 3 2 1 5 5 C 1.33488 * 113.15575 * 359.97438 * 4 3 2 6 6 C 1.50704 * 126.83126 * 179.97438 * 5 4 3 7 7 C 1.53003 * 117.49668 * 8.77579 * 6 5 4 8 8 C 1.52997 * 117.49874 * 300.12086 * 6 5 4 9 9 C 1.37363 * 106.34582 * 0.24178 * 5 4 3 10 10 C 1.47393 * 128.56688 * 179.75739 * 9 5 4 11 11 O 1.21602 * 120.00248 * 90.00495 * 10 9 5 12 12 N 1.34776 * 119.99775 * 269.99756 * 10 9 5 13 13 C 1.46507 * 119.99711 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46710 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.51088 * 304.99298 * 14 13 12 16 16 C 1.53295 * 109.50710 * 184.89906 * 14 13 12 17 17 N 1.47156 * 108.38278 * 187.77419 * 16 14 13 18 18 C 1.36936 * 120.98141 * 230.55263 * 17 16 14 19 19 H 1.08003 * 119.99842 * 26.24258 * 18 17 16 20 20 C 1.38815 * 120.00117 * 206.23720 * 18 17 16 21 21 N 1.31622 * 119.99751 * 16.90961 * 20 18 17 22 22 Si 1.86796 * 120.00038 * 196.91063 * 20 18 17 23 23 H 1.48496 * 109.47289 * 60.00032 * 22 20 18 24 24 H 1.48498 * 109.47120 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46948 * 299.99927 * 22 20 18 26 26 C 1.47153 * 118.03370 * 50.53172 * 17 16 14 27 27 C 1.53289 * 108.38736 * 309.46335 * 26 17 16 28 28 O 1.42959 * 109.51188 * 65.10136 * 14 13 12 29 29 H 1.09003 * 109.47066 * 89.97713 * 1 2 3 30 30 H 1.08999 * 109.47081 * 209.97784 * 1 2 3 31 31 H 1.08997 * 109.47336 * 329.97240 * 1 2 3 32 32 H 1.08993 * 115.55299 * 154.44138 * 6 5 4 33 33 H 1.09007 * 117.49515 * 0.02562 * 7 6 5 34 34 H 1.08991 * 117.50150 * 145.01744 * 7 6 5 35 35 H 1.09004 * 117.49829 * 214.98016 * 8 6 5 36 36 H 1.09001 * 117.49865 * 359.97108 * 8 6 5 37 37 H 0.96999 * 120.00311 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.46744 * 299.99413 * 13 12 10 39 39 H 1.08995 * 109.47508 * 60.00294 * 13 12 10 40 40 H 1.09000 * 109.68095 * 307.49170 * 16 14 13 41 41 H 1.08994 * 109.68746 * 68.01418 * 16 14 13 42 42 H 0.97001 * 119.99554 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.68019 * 69.19424 * 26 17 16 44 44 H 1.09001 * 109.67993 * 189.70536 * 26 17 16 45 45 H 1.08995 * 109.51717 * 172.22561 * 27 26 17 46 46 H 1.08996 * 109.51692 * 292.38251 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7209 -0.0005 5 6 3.6494 -0.6006 -0.0004 6 6 4.9712 -1.3245 -0.0014 7 6 6.2353 -0.4873 0.2043 8 6 5.9169 -1.0667 -1.1762 9 6 2.3992 -1.1696 -0.0053 10 6 2.0402 -2.5991 -0.0121 11 8 1.8900 -3.1934 1.0382 12 7 1.8783 -3.2476 -1.1824 13 6 1.5210 -4.6684 -1.1892 14 6 1.4003 -5.1570 -2.6341 15 1 0.6913 -4.5284 -3.1730 16 6 0.9079 -6.6087 -2.6442 17 7 0.9793 -7.1134 -4.0247 18 6 -0.0975 -7.7263 -4.6077 19 1 -1.0979 -7.4921 -4.2747 20 6 0.0966 -8.6487 -5.6268 21 7 1.2845 -9.1844 -5.8120 22 14 -1.3280 -9.1294 -6.7352 23 1 -1.8394 -7.9237 -7.4352 24 1 -0.8632 -10.1234 -7.7358 25 1 -2.4143 -9.7238 -5.9155 26 6 2.2419 -6.9395 -4.7602 27 6 2.6692 -5.4717 -4.6471 28 8 2.6789 -5.0881 -3.2698 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8897 0.5142 32 1 4.9579 -2.3283 0.4231 33 1 6.1107 0.5870 0.3408 34 1 7.0535 -0.9405 0.7637 35 1 6.5259 -1.9010 -1.5245 36 1 5.5828 -0.3740 -1.9486 37 1 1.9977 -2.7736 -2.0202 38 1 2.2944 -5.2400 -0.6762 39 1 0.5682 -4.8059 -0.6781 40 1 1.5420 -7.2159 -1.9982 41 1 -0.1223 -6.6495 -2.2907 42 1 1.4200 -9.8292 -6.5239 43 1 3.0102 -7.5800 -4.3272 44 1 2.0949 -7.1998 -5.8084 45 1 3.6681 -5.3499 -5.0658 46 1 1.9654 -4.8443 -5.1940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035445233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:21 Heat of formation + Delta-G solvation = 29.372111 kcal Electronic energy + Delta-G solvation = -29073.880107 eV Core-core repulsion = 24968.700043 eV Total energy + Delta-G solvation = -4105.180064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.11160 -39.71077 -38.48205 -37.73164 -34.98582 -34.79403 -34.33935 -32.13678 -31.50600 -30.65841 -29.05688 -27.68388 -26.04491 -24.38781 -23.80318 -23.21196 -22.79248 -21.87277 -20.87845 -19.94382 -19.55538 -18.13273 -17.96497 -17.00960 -16.74472 -16.27591 -16.13989 -15.84406 -15.07513 -14.76984 -14.67659 -14.42383 -13.97284 -13.79581 -13.64254 -13.60790 -13.30945 -13.26927 -13.09203 -12.78278 -12.51208 -12.28262 -11.97468 -11.72648 -11.65198 -11.46937 -11.17166 -10.89673 -10.83883 -10.79469 -10.48139 -10.36855 -10.31633 -10.10719 -10.02869 -9.72882 -9.43014 -9.14672 -9.11382 -8.59374 -6.81671 -5.89704 -3.33558 1.00282 1.66667 2.30135 2.51236 3.13228 3.31545 3.37684 3.38286 3.41576 3.80455 3.92123 4.15887 4.31729 4.38198 4.44775 4.50072 4.70544 4.96144 5.05015 5.13034 5.19361 5.25191 5.27518 5.29917 5.35025 5.40374 5.45174 5.50273 5.61692 5.69634 5.72374 5.75211 5.77476 5.95098 6.08006 6.20571 6.30290 6.38702 6.42093 6.68572 7.03865 7.39062 7.45767 7.65048 7.78208 7.96909 8.05635 8.27784 9.05755 9.68389 10.24910 11.18458 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.002554 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.262085 B =10959.878621 C =11722.797330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.053 3.947 6 C -0.096 4.096 7 C -0.162 4.162 8 C -0.153 4.153 9 C -0.243 4.243 10 C 0.598 3.402 11 O -0.529 6.529 12 N -0.705 5.705 13 C 0.129 3.871 14 C 0.065 3.935 15 H 0.059 0.941 16 C 0.122 3.878 17 N -0.594 5.594 18 C -0.258 4.258 19 H 0.069 0.931 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.906 3.094 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.282 1.282 26 C 0.139 3.861 27 C 0.040 3.960 28 O -0.389 6.389 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.405 0.595 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.030 0.970 41 H 0.064 0.936 42 H 0.256 0.744 43 H 0.028 0.972 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 18.174 8.832 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.010 4.010 6 C -0.115 4.115 7 C -0.199 4.199 8 C -0.191 4.191 9 C -0.251 4.251 10 C 0.382 3.618 11 O -0.406 6.406 12 N -0.356 5.356 13 C 0.006 3.994 14 C 0.005 3.995 15 H 0.077 0.923 16 C -0.005 4.005 17 N -0.317 5.317 18 C -0.387 4.387 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.735 3.265 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.208 1.208 26 C 0.014 3.986 27 C -0.038 4.038 28 O -0.309 6.309 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.158 0.842 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.240 0.760 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.286 18.936 9.538 22.115 hybrid contribution -0.981 -1.050 -1.174 1.856 sum 5.305 17.886 8.364 20.445 Atomic orbital electron populations 1.20250 0.85018 1.04404 1.03965 1.24749 0.98603 0.86441 1.00800 1.73622 0.89022 1.23232 1.20429 1.84494 1.21558 1.22384 1.68155 1.23537 0.95556 0.83400 0.98529 1.20552 0.83980 0.99616 1.07336 1.23110 0.96802 1.00219 0.99791 1.23154 1.00473 1.03919 0.91510 1.21837 0.92489 0.95432 1.15310 1.16820 0.77105 0.83792 0.84113 1.90830 1.50523 1.67660 1.31590 1.45922 1.69735 1.11746 1.08153 1.21512 1.01757 0.79665 0.96472 1.22804 0.86511 0.99050 0.91136 0.92307 1.21436 0.99387 0.90874 0.88835 1.44057 1.11900 1.67704 1.08082 1.19151 0.86190 1.17367 1.15983 0.91363 1.25049 0.96880 0.96296 1.01326 1.70023 1.21905 1.29747 1.32969 0.86315 0.81751 0.77904 0.80486 1.20958 1.21517 1.20766 1.21444 0.87350 0.90098 0.99727 1.23326 1.00388 0.98836 0.81235 1.87784 1.29445 1.88432 1.25208 0.89460 0.89577 0.89877 0.84170 0.87667 0.87312 0.86971 0.87939 0.75989 0.90326 0.89802 0.95174 0.91725 0.93395 0.95346 0.88758 0.90015 0.94122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.49 36.00 0.38 -0.32 16 2 C 0.06 0.66 7.59 -79.76 -0.61 0.05 16 3 N -0.36 -4.41 12.01 34.78 0.42 -3.99 16 4 O 0.10 1.10 10.86 18.66 0.20 1.30 16 5 C 0.05 0.59 7.00 -34.62 -0.24 0.35 16 6 C -0.10 -0.85 6.15 -91.77 -0.56 -1.41 16 7 C -0.16 -1.06 10.19 -26.70 -0.27 -1.33 16 8 C -0.15 -1.08 10.24 -26.70 -0.27 -1.35 16 9 C -0.24 -3.02 6.24 -102.89 -0.64 -3.66 16 10 C 0.60 8.27 7.63 -12.53 -0.10 8.18 16 11 O -0.53 -9.07 17.11 5.28 0.09 -8.98 16 12 N -0.71 -8.98 5.50 -61.39 -0.34 -9.31 16 13 C 0.13 1.82 5.34 -4.03 -0.02 1.80 16 14 C 0.06 1.07 2.81 -26.58 -0.07 0.99 16 15 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 16 C 0.12 2.43 6.02 -3.53 -0.02 2.41 16 17 N -0.59 -14.38 3.05 -171.83 -0.52 -14.91 16 18 C -0.26 -6.83 9.65 -15.06 -0.15 -6.98 16 19 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 20 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 21 N -0.90 -25.42 11.14 55.49 0.62 -24.81 16 22 Si 0.91 21.00 29.59 -169.99 -5.03 15.98 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.14 3.20 5.45 -3.54 -0.02 3.19 16 27 C 0.04 0.73 6.98 37.31 0.26 0.99 16 28 O -0.39 -6.86 10.34 -35.23 -0.36 -7.22 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.14 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.10 0.66 8.02 -51.92 -0.42 0.25 16 34 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.41 4.68 8.46 -40.82 -0.35 4.33 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.39 6.14 -51.93 -0.32 2.07 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -31.78 388.39 -8.46 -40.24 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.96 Total: 2.94 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.42 Total: 2.91 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.17 Total: -53.02 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.07 Total: -14.90 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.78 -8.46 -40.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035445233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.612 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds