Wall clock time and date at job start Tue Mar 31 2020 19:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30019 * 127.33445 * 2 1 4 4 O 1.20655 * 112.30298 * 180.02562 * 3 2 1 5 5 C 1.33488 * 113.15575 * 359.97438 * 4 3 2 6 6 C 1.50704 * 126.83126 * 179.97438 * 5 4 3 7 7 C 1.53003 * 117.49668 * 8.77579 * 6 5 4 8 8 C 1.52997 * 117.49874 * 300.12086 * 6 5 4 9 9 C 1.37363 * 106.34582 * 0.24178 * 5 4 3 10 10 C 1.47393 * 128.56688 * 179.75739 * 9 5 4 11 11 O 1.21602 * 120.00248 * 90.00495 * 10 9 5 12 12 N 1.34776 * 119.99775 * 269.99756 * 10 9 5 13 13 C 1.46507 * 119.99711 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46710 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.51088 * 304.99298 * 14 13 12 16 16 C 1.53295 * 109.50710 * 184.89906 * 14 13 12 17 17 N 1.47156 * 108.38278 * 187.77419 * 16 14 13 18 18 C 1.36936 * 120.98141 * 230.55263 * 17 16 14 19 19 H 1.08003 * 119.99842 * 26.24258 * 18 17 16 20 20 C 1.38815 * 120.00117 * 206.23720 * 18 17 16 21 21 N 1.31622 * 119.99751 * 16.90961 * 20 18 17 22 22 Si 1.86796 * 120.00038 * 196.91063 * 20 18 17 23 23 H 1.48496 * 109.47289 * 60.00032 * 22 20 18 24 24 H 1.48498 * 109.47120 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46948 * 299.99927 * 22 20 18 26 26 C 1.47153 * 118.03370 * 50.53172 * 17 16 14 27 27 C 1.53289 * 108.38736 * 309.46335 * 26 17 16 28 28 O 1.42959 * 109.51188 * 65.10136 * 14 13 12 29 29 H 1.09003 * 109.47066 * 89.97713 * 1 2 3 30 30 H 1.08999 * 109.47081 * 209.97784 * 1 2 3 31 31 H 1.08997 * 109.47336 * 329.97240 * 1 2 3 32 32 H 1.08993 * 115.55299 * 154.44138 * 6 5 4 33 33 H 1.09007 * 117.49515 * 0.02562 * 7 6 5 34 34 H 1.08991 * 117.50150 * 145.01744 * 7 6 5 35 35 H 1.09004 * 117.49829 * 214.98016 * 8 6 5 36 36 H 1.09001 * 117.49865 * 359.97108 * 8 6 5 37 37 H 0.96999 * 120.00311 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.46744 * 299.99413 * 13 12 10 39 39 H 1.08995 * 109.47508 * 60.00294 * 13 12 10 40 40 H 1.09000 * 109.68095 * 307.49170 * 16 14 13 41 41 H 1.08994 * 109.68746 * 68.01418 * 16 14 13 42 42 H 0.97001 * 119.99554 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.68019 * 69.19424 * 26 17 16 44 44 H 1.09001 * 109.67993 * 189.70536 * 26 17 16 45 45 H 1.08995 * 109.51717 * 172.22561 * 27 26 17 46 46 H 1.08996 * 109.51692 * 292.38251 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7209 -0.0005 5 6 3.6494 -0.6006 -0.0004 6 6 4.9712 -1.3245 -0.0014 7 6 6.2353 -0.4873 0.2043 8 6 5.9169 -1.0667 -1.1762 9 6 2.3992 -1.1696 -0.0053 10 6 2.0402 -2.5991 -0.0121 11 8 1.8900 -3.1934 1.0382 12 7 1.8783 -3.2476 -1.1824 13 6 1.5210 -4.6684 -1.1892 14 6 1.4003 -5.1570 -2.6341 15 1 0.6913 -4.5284 -3.1730 16 6 0.9079 -6.6087 -2.6442 17 7 0.9793 -7.1134 -4.0247 18 6 -0.0975 -7.7263 -4.6077 19 1 -1.0979 -7.4921 -4.2747 20 6 0.0966 -8.6487 -5.6268 21 7 1.2845 -9.1844 -5.8120 22 14 -1.3280 -9.1294 -6.7352 23 1 -1.8394 -7.9237 -7.4352 24 1 -0.8632 -10.1234 -7.7358 25 1 -2.4143 -9.7238 -5.9155 26 6 2.2419 -6.9395 -4.7602 27 6 2.6692 -5.4717 -4.6471 28 8 2.6789 -5.0881 -3.2698 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8897 0.5142 32 1 4.9579 -2.3283 0.4231 33 1 6.1107 0.5870 0.3408 34 1 7.0535 -0.9405 0.7637 35 1 6.5259 -1.9010 -1.5245 36 1 5.5828 -0.3740 -1.9486 37 1 1.9977 -2.7736 -2.0202 38 1 2.2944 -5.2400 -0.6762 39 1 0.5682 -4.8059 -0.6781 40 1 1.5420 -7.2159 -1.9982 41 1 -0.1223 -6.6495 -2.2907 42 1 1.4200 -9.8292 -6.5239 43 1 3.0102 -7.5800 -4.3272 44 1 2.0949 -7.1998 -5.8084 45 1 3.6681 -5.3499 -5.0658 46 1 1.9654 -4.8443 -5.1940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035445233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:20 Heat of formation + Delta-G solvation = 9.065730 kcal Electronic energy + Delta-G solvation = -29074.760657 eV Core-core repulsion = 24968.700043 eV Total energy + Delta-G solvation = -4106.060615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.99240 -40.90094 -39.94710 -38.35537 -36.52974 -35.82080 -35.65548 -33.41380 -32.94777 -32.15841 -29.83651 -29.27432 -27.53588 -25.58272 -24.89559 -24.56774 -23.36445 -23.26268 -21.98638 -21.35004 -20.54917 -19.16268 -18.86887 -18.79096 -17.64584 -17.54303 -17.27906 -16.91081 -16.77636 -16.16562 -15.84914 -15.62019 -15.48777 -15.05123 -14.92337 -14.62929 -14.43872 -14.33634 -14.31125 -14.01485 -13.65444 -13.23247 -13.06952 -13.00124 -12.67176 -12.54455 -12.53412 -12.42780 -12.22137 -12.17730 -12.09587 -11.87520 -11.50606 -11.44313 -11.27636 -11.00153 -10.79534 -10.53902 -10.25946 -10.25165 -8.75384 -7.91261 -5.38394 0.14623 0.78207 1.23438 1.47691 1.49221 1.56297 1.62617 2.12078 2.48364 2.76593 2.79727 3.02726 3.12103 3.24023 3.48637 3.57941 3.67665 3.86006 3.95617 3.97478 4.06548 4.14926 4.25168 4.40972 4.46913 4.50732 4.52259 4.56771 4.61461 4.67502 4.72645 4.76074 4.76362 4.90464 4.92114 5.04239 5.06002 5.06777 5.20464 5.23244 5.25066 5.56036 5.61791 6.25291 6.31922 6.35054 6.98754 7.06441 7.09985 7.74677 8.27791 9.14615 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.002554 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.262085 B =10959.878621 C =11722.797330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.373 5.373 4 O 0.093 5.907 5 C 0.067 3.933 6 C -0.120 4.120 7 C -0.147 4.147 8 C -0.144 4.144 9 C -0.270 4.270 10 C 0.608 3.392 11 O -0.566 6.566 12 N -0.694 5.694 13 C 0.140 3.860 14 C 0.079 3.921 15 H 0.070 0.930 16 C 0.117 3.883 17 N -0.613 5.613 18 C -0.267 4.267 19 H 0.073 0.927 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.276 1.276 26 C 0.143 3.857 27 C 0.055 3.945 28 O -0.388 6.388 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.414 0.586 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.019 0.981 41 H 0.073 0.927 42 H 0.252 0.748 43 H -0.001 1.001 44 H 0.067 0.933 45 H 0.109 0.891 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.298 19.946 8.748 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 N -0.082 5.082 4 O 0.034 5.966 5 C 0.003 3.997 6 C -0.139 4.139 7 C -0.184 4.184 8 C -0.182 4.182 9 C -0.277 4.277 10 C 0.393 3.607 11 O -0.445 6.445 12 N -0.344 5.344 13 C 0.016 3.984 14 C 0.020 3.980 15 H 0.087 0.913 16 C -0.010 4.010 17 N -0.338 5.338 18 C -0.397 4.397 19 H 0.091 0.909 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.202 1.202 26 C 0.017 3.983 27 C -0.023 4.023 28 O -0.307 6.307 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.152 0.848 33 H 0.127 0.873 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.122 0.878 37 H 0.250 0.750 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.037 0.963 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.017 0.983 44 H 0.085 0.915 45 H 0.127 0.873 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.203 20.748 9.456 23.630 hybrid contribution -0.913 -1.613 -1.086 2.148 sum 5.290 19.135 8.370 21.545 Atomic orbital electron populations 1.20385 0.83270 1.04903 1.05149 1.25180 0.99759 0.85910 0.99745 1.73610 0.89329 1.23653 1.21615 1.84477 1.21409 1.22500 1.68245 1.23914 0.96114 0.83190 0.96483 1.20656 0.83930 0.99672 1.09667 1.23238 0.95523 1.00192 0.99438 1.23246 0.99260 1.04209 0.91436 1.21741 0.93438 0.94786 1.17737 1.16875 0.76125 0.84162 0.83543 1.90811 1.52271 1.68611 1.32840 1.45764 1.69145 1.11074 1.08418 1.21317 1.02118 0.80280 0.94674 1.22640 0.86156 0.96751 0.92474 0.91258 1.21599 1.00015 0.92749 0.86605 1.44341 1.11667 1.67889 1.09871 1.19517 0.87146 1.17043 1.16006 0.90927 1.25813 0.99165 0.96697 1.02801 1.70182 1.23830 1.30587 1.33497 0.85300 0.78911 0.77498 0.78483 1.20111 1.22100 1.20195 1.21310 0.86366 0.92881 0.97695 1.23147 1.02046 0.95237 0.81848 1.87802 1.30080 1.87931 1.24880 0.87844 0.89728 0.88690 0.84809 0.87328 0.85589 0.85904 0.87776 0.74978 0.91234 0.88724 0.96264 0.90844 0.93937 0.98266 0.91512 0.87275 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.49 71.24 0.75 -0.53 16 2 C 0.06 1.25 7.59 45.16 0.34 1.60 16 3 N -0.37 -8.84 12.01 -44.77 -0.54 -9.37 16 4 O 0.09 2.03 10.86 77.03 0.84 2.87 16 5 C 0.07 1.40 7.00 25.48 0.18 1.58 16 6 C -0.12 -1.96 6.15 -11.54 -0.07 -2.03 16 7 C -0.15 -1.60 10.19 30.62 0.31 -1.29 16 8 C -0.14 -1.71 10.24 30.62 0.31 -1.40 16 9 C -0.27 -6.43 6.24 -18.74 -0.12 -6.54 16 10 C 0.61 16.23 7.63 86.65 0.66 16.89 16 11 O -0.57 -19.17 17.11 -4.04 -0.07 -19.24 16 12 N -0.69 -16.51 5.50 -466.39 -2.57 -19.07 16 13 C 0.14 3.73 5.34 86.38 0.46 4.19 16 14 C 0.08 2.47 2.81 30.70 0.09 2.56 16 15 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 16 C 0.12 4.58 6.02 86.35 0.52 5.10 16 17 N -0.61 -29.78 3.05 -697.54 -2.13 -31.90 16 18 C -0.27 -14.18 9.65 84.03 0.81 -13.36 16 19 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 20 C -0.05 -2.66 4.95 84.86 0.42 -2.24 16 21 N -0.94 -53.89 11.14 21.65 0.24 -53.65 16 22 Si 0.97 43.32 29.59 68.60 2.03 45.35 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 C 0.14 6.65 5.45 86.35 0.47 7.12 16 27 C 0.05 1.92 6.98 72.08 0.50 2.42 16 28 O -0.39 -12.92 10.34 -148.98 -1.54 -14.46 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.11 1.13 8.02 -2.38 -0.02 1.11 16 34 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.41 8.62 8.46 -92.71 -0.78 7.84 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 42 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 43 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.07 3.46 6.14 -2.39 -0.01 3.45 16 45 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -68.85 388.39 2.13 -66.73 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.22 Total: 18.68 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 5.64 Total: 14.07 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -4.99 Total: -114.00 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.77 Total: -30.82 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -68.85 2.13 -66.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035445233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.792 kcal (2) G-P(sol) polarization free energy of solvation -68.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds