Wall clock time and date at job start Tue Mar 31 2020 19:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30020 * 127.33437 * 2 1 4 4 O 1.20659 * 112.29942 * 180.02562 * 3 2 1 5 5 C 1.33493 * 113.15959 * 359.71788 * 4 3 2 6 6 C 1.50697 * 126.83017 * 180.30720 * 5 4 3 7 7 C 1.53006 * 117.49730 * 8.79765 * 6 5 4 8 8 C 1.53000 * 117.50127 * 300.17378 * 6 5 4 9 9 C 1.37359 * 106.33953 * 0.44910 * 5 4 3 10 10 C 1.47400 * 128.56167 * 179.85510 * 9 5 4 11 11 O 1.21611 * 119.99800 * 269.69819 * 10 9 5 12 12 N 1.34773 * 120.00221 * 89.70871 * 10 9 5 13 13 C 1.46494 * 120.00525 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47407 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.51140 * 60.10415 * 14 13 12 16 16 C 1.53717 * 109.44245 * 180.38673 * 14 13 12 17 17 N 1.47154 * 108.16009 * 172.37554 * 16 14 13 18 18 C 1.36931 * 120.97887 * 129.43492 * 17 16 14 19 19 H 1.08005 * 120.00440 * 333.49504 * 18 17 16 20 20 C 1.38812 * 119.99878 * 153.49544 * 18 17 16 21 21 N 1.31622 * 120.00058 * 343.08256 * 20 18 17 22 22 Si 1.86803 * 119.99905 * 162.80886 * 20 18 17 23 23 H 1.48497 * 109.46927 * 90.00263 * 22 20 18 24 24 H 1.48506 * 109.46836 * 209.99902 * 22 20 18 25 25 H 1.48490 * 109.47352 * 329.99799 * 22 20 18 26 26 C 1.47149 * 118.03579 * 309.15864 * 17 16 14 27 27 C 1.53296 * 108.38694 * 50.78628 * 26 17 16 28 28 O 1.42963 * 109.22250 * 307.69880 * 27 26 17 29 29 H 1.08997 * 109.47404 * 269.95382 * 1 2 3 30 30 H 1.08997 * 109.47463 * 29.96047 * 1 2 3 31 31 H 1.09002 * 109.46699 * 149.95830 * 1 2 3 32 32 H 1.08998 * 115.54810 * 154.49608 * 6 5 4 33 33 H 1.08992 * 117.49704 * 359.97438 * 7 6 5 34 34 H 1.08994 * 117.49689 * 145.02374 * 7 6 5 35 35 H 1.08999 * 117.49666 * 214.98343 * 8 6 5 36 36 H 1.09000 * 117.49971 * 359.97438 * 8 6 5 37 37 H 0.97008 * 119.99748 * 359.97438 * 12 10 9 38 38 H 1.09007 * 109.46800 * 59.99495 * 13 12 10 39 39 H 1.08997 * 109.46982 * 300.00091 * 13 12 10 40 40 H 1.08999 * 109.83737 * 52.69713 * 16 14 13 41 41 H 1.09001 * 109.74797 * 292.00152 * 16 14 13 42 42 H 0.96999 * 120.00005 * 180.02562 * 21 20 18 43 43 H 1.08993 * 109.68413 * 170.50997 * 26 17 16 44 44 H 1.08997 * 109.68203 * 291.02940 * 26 17 16 45 45 H 1.09004 * 109.50741 * 67.61742 * 27 26 17 46 46 H 1.08993 * 109.51437 * 187.72356 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0051 6 6 4.9712 -1.3245 0.0127 7 6 6.2342 -0.4866 0.2218 8 6 5.9228 -1.0699 -1.1580 9 6 2.3992 -1.1696 -0.0006 10 6 2.0402 -2.5992 -0.0009 11 8 1.8921 -3.1887 -1.0542 12 7 1.8759 -3.2530 1.1661 13 6 1.5186 -4.6737 1.1659 14 6 1.3949 -5.1687 2.6083 15 1 0.6195 -4.6011 3.1228 16 6 1.0294 -6.6618 2.6072 17 7 1.0981 -7.1518 3.9931 18 6 0.0598 -7.8537 4.5448 19 1 -0.9460 -7.7063 4.1799 20 6 0.3000 -8.7548 5.5730 21 7 1.5229 -9.1871 5.7970 22 14 -1.1112 -9.3481 6.6436 23 1 -1.7062 -10.5702 6.0457 24 1 -0.6034 -9.6594 8.0040 25 1 -2.1455 -8.2864 6.7323 26 6 2.3179 -6.8706 4.7665 27 6 2.6228 -5.3720 4.6606 28 8 2.6431 -4.9920 3.2825 29 1 -0.3634 -0.0008 1.0276 30 1 -0.3634 0.8903 -0.5132 31 1 -0.3633 -0.8896 -0.5145 32 1 4.9556 -2.3272 0.4398 33 1 6.1091 0.5881 0.3534 34 1 7.0499 -0.9381 0.7865 35 1 6.5335 -1.9051 -1.5010 36 1 5.5927 -0.3792 -1.9339 37 1 1.9943 -2.7828 2.0063 38 1 2.2930 -5.2430 0.6518 39 1 0.5668 -4.8088 0.6521 40 1 1.7348 -7.2149 1.9870 41 1 0.0186 -6.7933 2.2210 42 1 1.6906 -9.8170 6.5153 43 1 2.1609 -7.1403 5.8108 44 1 3.1507 -7.4447 4.3603 45 1 1.8517 -4.8058 5.1831 46 1 3.5940 -5.1653 5.1103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035445234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:24 Heat of formation + Delta-G solvation = 29.391913 kcal Electronic energy + Delta-G solvation = -29024.279778 eV Core-core repulsion = 24919.100572 eV Total energy + Delta-G solvation = -4105.179205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.10674 -39.70420 -38.47291 -37.73291 -34.98345 -34.79143 -34.33262 -32.13823 -31.49882 -30.65067 -29.05521 -27.68994 -26.03596 -24.40071 -23.80033 -23.20939 -22.79212 -21.86448 -20.85876 -19.94085 -19.57153 -18.18430 -17.90423 -17.01089 -16.75350 -16.27349 -16.16478 -15.80415 -15.07954 -14.77890 -14.67456 -14.42590 -13.97209 -13.78710 -13.65103 -13.60557 -13.31928 -13.26801 -13.09735 -12.78108 -12.50066 -12.29021 -11.97893 -11.75043 -11.62625 -11.45757 -11.17903 -10.90748 -10.83902 -10.77304 -10.48099 -10.37640 -10.31291 -10.10324 -10.03436 -9.72824 -9.42701 -9.15479 -9.10354 -8.59612 -6.81560 -5.90053 -3.33800 1.00672 1.67064 2.30676 2.50875 3.16622 3.30442 3.37755 3.38493 3.39568 3.81978 3.91566 4.15540 4.32034 4.38071 4.45239 4.49205 4.71913 4.96469 5.05662 5.12986 5.19442 5.24648 5.27466 5.29799 5.34876 5.39368 5.44822 5.49946 5.61433 5.69112 5.71465 5.75224 5.77505 5.95352 6.07958 6.20777 6.30118 6.38469 6.42077 6.68318 7.03561 7.39901 7.45533 7.65174 7.77404 7.97176 8.06503 8.27549 9.05527 9.68220 10.24780 11.18072 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.002500 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.498607 B =11198.124831 C =11884.352503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.053 3.947 6 C -0.095 4.095 7 C -0.161 4.161 8 C -0.156 4.156 9 C -0.243 4.243 10 C 0.597 3.403 11 O -0.528 6.528 12 N -0.706 5.706 13 C 0.129 3.871 14 C 0.065 3.935 15 H 0.060 0.940 16 C 0.122 3.878 17 N -0.594 5.594 18 C -0.257 4.257 19 H 0.069 0.931 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.140 3.860 27 C 0.040 3.960 28 O -0.390 6.390 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.406 0.594 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.031 0.969 41 H 0.064 0.936 42 H 0.255 0.745 43 H 0.094 0.906 44 H 0.028 0.972 45 H 0.041 0.959 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 18.275 -9.516 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.010 4.010 6 C -0.114 4.114 7 C -0.198 4.198 8 C -0.193 4.193 9 C -0.250 4.250 10 C 0.381 3.619 11 O -0.404 6.404 12 N -0.357 5.357 13 C 0.006 3.994 14 C 0.005 3.995 15 H 0.078 0.922 16 C -0.005 4.005 17 N -0.318 5.318 18 C -0.386 4.386 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.204 1.204 26 C 0.014 3.986 27 C -0.038 4.038 28 O -0.310 6.310 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.160 0.840 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.241 0.759 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.046 0.954 45 H 0.059 0.941 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.604 19.074 -10.213 22.350 hybrid contribution -0.951 -1.151 1.224 1.930 sum 4.653 17.923 -8.989 20.584 Atomic orbital electron populations 1.20248 0.85025 1.04385 1.03968 1.24747 0.98599 0.86447 1.00817 1.73623 0.89021 1.23232 1.20420 1.84494 1.21558 1.22381 1.68163 1.23534 0.95558 0.83401 0.98550 1.20555 0.83936 0.99676 1.07253 1.23110 0.96891 1.00215 0.99570 1.23124 1.00551 1.03905 0.91708 1.21842 0.92474 0.95422 1.15266 1.16830 0.77151 0.83770 0.84145 1.90831 1.50455 1.67883 1.31275 1.45912 1.69790 1.11740 1.08209 1.21525 1.01733 0.79690 0.96454 1.22902 0.87128 0.98799 0.90713 0.92236 1.21526 0.99750 0.90493 0.88766 1.44082 1.17191 1.63333 1.07148 1.19178 0.87070 1.16445 1.15925 0.91338 1.25055 0.96550 0.96643 1.01333 1.70029 1.19255 1.32966 1.32387 0.86262 0.81633 0.78703 0.79971 1.21251 1.21450 1.20428 1.21439 0.88413 0.89453 0.99304 1.23326 1.00364 0.98913 0.81162 1.87765 1.32432 1.86450 1.24313 0.89456 0.89888 0.89590 0.84035 0.87644 0.87194 0.87132 0.88048 0.75909 0.90392 0.89849 0.95145 0.91711 0.93450 0.88768 0.95357 0.94088 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.49 36.00 0.38 -0.32 16 2 C 0.06 0.66 7.59 -79.77 -0.61 0.05 16 3 N -0.36 -4.42 12.01 34.78 0.42 -4.00 16 4 O 0.10 1.10 10.86 18.65 0.20 1.31 16 5 C 0.05 0.59 7.00 -34.63 -0.24 0.35 16 6 C -0.10 -0.85 6.15 -91.77 -0.56 -1.41 16 7 C -0.16 -1.06 10.18 -26.72 -0.27 -1.34 16 8 C -0.16 -1.12 10.23 -26.73 -0.27 -1.39 16 9 C -0.24 -3.02 6.24 -102.89 -0.64 -3.67 16 10 C 0.60 8.29 7.63 -12.53 -0.10 8.19 16 11 O -0.53 -9.08 17.11 5.27 0.09 -8.99 16 12 N -0.71 -9.01 5.44 -61.40 -0.33 -9.34 16 13 C 0.13 1.82 5.37 -4.05 -0.02 1.80 16 14 C 0.06 1.06 2.88 -26.36 -0.08 0.98 16 15 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 16 C 0.12 2.43 6.05 -3.31 -0.02 2.41 16 17 N -0.59 -14.38 3.04 -171.57 -0.52 -14.90 16 18 C -0.26 -6.81 9.65 -15.06 -0.15 -6.95 16 19 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 20 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 21 N -0.90 -25.42 11.14 55.49 0.62 -24.80 16 22 Si 0.91 20.99 29.59 -169.99 -5.03 15.96 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 C 0.14 3.21 5.44 -3.53 -0.02 3.19 16 27 C 0.04 0.73 6.99 37.31 0.26 0.99 16 28 O -0.39 -6.84 10.13 -35.23 -0.36 -7.20 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.14 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.11 0.67 8.02 -51.93 -0.42 0.25 16 34 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.41 4.72 8.33 -40.82 -0.34 4.38 16 38 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.09 2.39 6.14 -51.93 -0.32 2.07 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -31.81 388.12 -8.45 -40.26 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.96 Total: 2.98 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -2.43 Total: 2.88 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.18 Total: -53.05 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.06 Total: -14.88 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.81 -8.45 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035445234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.652 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds