Wall clock time and date at job start Tue Mar 31 2020 19:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30020 * 127.33437 * 2 1 4 4 O 1.20659 * 112.29942 * 180.02562 * 3 2 1 5 5 C 1.33493 * 113.15959 * 359.71788 * 4 3 2 6 6 C 1.50697 * 126.83017 * 180.30720 * 5 4 3 7 7 C 1.53006 * 117.49730 * 8.79765 * 6 5 4 8 8 C 1.53000 * 117.50127 * 300.17378 * 6 5 4 9 9 C 1.37359 * 106.33953 * 0.44910 * 5 4 3 10 10 C 1.47400 * 128.56167 * 179.85510 * 9 5 4 11 11 O 1.21611 * 119.99800 * 269.69819 * 10 9 5 12 12 N 1.34773 * 120.00221 * 89.70871 * 10 9 5 13 13 C 1.46494 * 120.00525 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47407 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.51140 * 60.10415 * 14 13 12 16 16 C 1.53717 * 109.44245 * 180.38673 * 14 13 12 17 17 N 1.47154 * 108.16009 * 172.37554 * 16 14 13 18 18 C 1.36931 * 120.97887 * 129.43492 * 17 16 14 19 19 H 1.08005 * 120.00440 * 333.49504 * 18 17 16 20 20 C 1.38812 * 119.99878 * 153.49544 * 18 17 16 21 21 N 1.31622 * 120.00058 * 343.08256 * 20 18 17 22 22 Si 1.86803 * 119.99905 * 162.80886 * 20 18 17 23 23 H 1.48497 * 109.46927 * 90.00263 * 22 20 18 24 24 H 1.48506 * 109.46836 * 209.99902 * 22 20 18 25 25 H 1.48490 * 109.47352 * 329.99799 * 22 20 18 26 26 C 1.47149 * 118.03579 * 309.15864 * 17 16 14 27 27 C 1.53296 * 108.38694 * 50.78628 * 26 17 16 28 28 O 1.42963 * 109.22250 * 307.69880 * 27 26 17 29 29 H 1.08997 * 109.47404 * 269.95382 * 1 2 3 30 30 H 1.08997 * 109.47463 * 29.96047 * 1 2 3 31 31 H 1.09002 * 109.46699 * 149.95830 * 1 2 3 32 32 H 1.08998 * 115.54810 * 154.49608 * 6 5 4 33 33 H 1.08992 * 117.49704 * 359.97438 * 7 6 5 34 34 H 1.08994 * 117.49689 * 145.02374 * 7 6 5 35 35 H 1.08999 * 117.49666 * 214.98343 * 8 6 5 36 36 H 1.09000 * 117.49971 * 359.97438 * 8 6 5 37 37 H 0.97008 * 119.99748 * 359.97438 * 12 10 9 38 38 H 1.09007 * 109.46800 * 59.99495 * 13 12 10 39 39 H 1.08997 * 109.46982 * 300.00091 * 13 12 10 40 40 H 1.08999 * 109.83737 * 52.69713 * 16 14 13 41 41 H 1.09001 * 109.74797 * 292.00152 * 16 14 13 42 42 H 0.96999 * 120.00005 * 180.02562 * 21 20 18 43 43 H 1.08993 * 109.68413 * 170.50997 * 26 17 16 44 44 H 1.08997 * 109.68203 * 291.02940 * 26 17 16 45 45 H 1.09004 * 109.50741 * 67.61742 * 27 26 17 46 46 H 1.08993 * 109.51437 * 187.72356 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0051 6 6 4.9712 -1.3245 0.0127 7 6 6.2342 -0.4866 0.2218 8 6 5.9228 -1.0699 -1.1580 9 6 2.3992 -1.1696 -0.0006 10 6 2.0402 -2.5992 -0.0009 11 8 1.8921 -3.1887 -1.0542 12 7 1.8759 -3.2530 1.1661 13 6 1.5186 -4.6737 1.1659 14 6 1.3949 -5.1687 2.6083 15 1 0.6195 -4.6011 3.1228 16 6 1.0294 -6.6618 2.6072 17 7 1.0981 -7.1518 3.9931 18 6 0.0598 -7.8537 4.5448 19 1 -0.9460 -7.7063 4.1799 20 6 0.3000 -8.7548 5.5730 21 7 1.5229 -9.1871 5.7970 22 14 -1.1112 -9.3481 6.6436 23 1 -1.7062 -10.5702 6.0457 24 1 -0.6034 -9.6594 8.0040 25 1 -2.1455 -8.2864 6.7323 26 6 2.3179 -6.8706 4.7665 27 6 2.6228 -5.3720 4.6606 28 8 2.6431 -4.9920 3.2825 29 1 -0.3634 -0.0008 1.0276 30 1 -0.3634 0.8903 -0.5132 31 1 -0.3633 -0.8896 -0.5145 32 1 4.9556 -2.3272 0.4398 33 1 6.1091 0.5881 0.3534 34 1 7.0499 -0.9381 0.7865 35 1 6.5335 -1.9051 -1.5010 36 1 5.5927 -0.3792 -1.9339 37 1 1.9943 -2.7828 2.0063 38 1 2.2930 -5.2430 0.6518 39 1 0.5668 -4.8088 0.6521 40 1 1.7348 -7.2149 1.9870 41 1 0.0186 -6.7933 2.2210 42 1 1.6906 -9.8170 6.5153 43 1 2.1609 -7.1403 5.8108 44 1 3.1507 -7.4447 4.3603 45 1 1.8517 -4.8058 5.1831 46 1 3.5940 -5.1653 5.1103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035445234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:23 Heat of formation + Delta-G solvation = 9.126148 kcal Electronic energy + Delta-G solvation = -29025.158567 eV Core-core repulsion = 24919.100572 eV Total energy + Delta-G solvation = -4106.057995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.99030 -40.89553 -39.93674 -38.36295 -36.53523 -35.80674 -35.65390 -33.41071 -32.95294 -32.14629 -29.83605 -29.27919 -27.52953 -25.59381 -24.89384 -24.56988 -23.38880 -23.23946 -21.96341 -21.36750 -20.55264 -19.19221 -18.88932 -18.73868 -17.65063 -17.56519 -17.25719 -16.91603 -16.76066 -16.17941 -15.85583 -15.61550 -15.48991 -15.06193 -14.92243 -14.64289 -14.44005 -14.33478 -14.30746 -14.01180 -13.65134 -13.22593 -13.07597 -13.01375 -12.69624 -12.56836 -12.49722 -12.44102 -12.20215 -12.17911 -12.08513 -11.88210 -11.51357 -11.45225 -11.26965 -11.00086 -10.80328 -10.54307 -10.25985 -10.24607 -8.75322 -7.91588 -5.38647 0.14575 0.78378 1.23845 1.46665 1.48340 1.57744 1.61872 2.13536 2.48254 2.76009 2.77352 3.04250 3.11803 3.24023 3.48863 3.57560 3.68577 3.85217 3.94716 3.97640 4.06025 4.15030 4.24311 4.40198 4.46736 4.50593 4.51596 4.56889 4.62317 4.67578 4.72848 4.74098 4.76757 4.90295 4.91225 5.03281 5.05759 5.06732 5.19177 5.22563 5.25446 5.55994 5.61705 6.24681 6.31992 6.35209 6.99283 7.06260 7.09931 7.74480 8.27627 9.14357 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.002500 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.498607 B =11198.124831 C =11884.352503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.373 5.373 4 O 0.092 5.908 5 C 0.066 3.934 6 C -0.120 4.120 7 C -0.143 4.143 8 C -0.152 4.152 9 C -0.269 4.269 10 C 0.608 3.392 11 O -0.565 6.565 12 N -0.695 5.695 13 C 0.140 3.860 14 C 0.079 3.921 15 H 0.070 0.930 16 C 0.117 3.883 17 N -0.613 5.613 18 C -0.266 4.266 19 H 0.073 0.927 20 C -0.050 4.050 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.268 1.268 26 C 0.143 3.857 27 C 0.055 3.945 28 O -0.388 6.388 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.414 0.586 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.251 0.749 43 H 0.066 0.934 44 H -0.001 1.001 45 H 0.050 0.950 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 19.971 -9.547 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 N -0.082 5.082 4 O 0.033 5.967 5 C 0.002 3.998 6 C -0.139 4.139 7 C -0.180 4.180 8 C -0.189 4.189 9 C -0.276 4.276 10 C 0.392 3.608 11 O -0.444 6.444 12 N -0.345 5.345 13 C 0.016 3.984 14 C 0.019 3.981 15 H 0.088 0.912 16 C -0.010 4.010 17 N -0.338 5.338 18 C -0.396 4.396 19 H 0.091 0.909 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.797 3.203 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.193 1.193 26 C 0.018 3.982 27 C -0.023 4.023 28 O -0.307 6.307 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.127 0.873 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.118 0.882 37 H 0.251 0.749 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.038 0.962 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.017 0.983 45 H 0.068 0.932 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.422 20.809 -10.247 23.820 hybrid contribution -0.850 -1.691 1.168 2.224 sum 4.572 19.118 -9.078 21.652 Atomic orbital electron populations 1.20384 0.83252 1.04906 1.05151 1.25183 0.99766 0.85906 0.99743 1.73611 0.89325 1.23663 1.21610 1.84476 1.21418 1.22504 1.68260 1.23914 0.96123 0.83195 0.96524 1.20691 0.83876 0.99890 1.09421 1.23224 0.95574 1.00190 0.98976 1.23235 0.99615 1.04326 0.91733 1.21751 0.93417 0.94794 1.17673 1.16880 0.76171 0.84131 0.83573 1.90811 1.52209 1.68825 1.32518 1.45760 1.69199 1.11089 1.08459 1.21337 1.02146 0.80269 0.94653 1.22737 0.86962 0.96330 0.92024 0.91224 1.21690 1.00149 0.92591 0.86545 1.44366 1.16952 1.63479 1.08975 1.19540 0.87965 1.16181 1.15921 0.90925 1.25819 0.98735 0.97255 1.02712 1.70184 1.21153 1.33862 1.32914 0.85248 0.78977 0.78194 0.77838 1.21268 1.21832 1.19287 1.21306 0.87155 0.92455 0.97319 1.23146 1.02144 0.95155 0.81820 1.87784 1.33051 1.85923 1.23971 0.87847 0.88688 0.89712 0.84353 0.87283 0.85446 0.85863 0.88221 0.74943 0.91275 0.88681 0.96233 0.90838 0.93945 0.91536 0.98277 0.93185 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.49 71.23 0.75 -0.53 16 2 C 0.06 1.26 7.59 45.15 0.34 1.60 16 3 N -0.37 -8.87 12.01 -44.77 -0.54 -9.41 16 4 O 0.09 2.04 10.86 76.99 0.84 2.88 16 5 C 0.07 1.40 7.00 25.48 0.18 1.58 16 6 C -0.12 -1.97 6.15 -11.54 -0.07 -2.04 16 7 C -0.14 -1.57 10.18 30.60 0.31 -1.25 16 8 C -0.15 -1.92 10.23 30.60 0.31 -1.61 16 9 C -0.27 -6.43 6.24 -18.74 -0.12 -6.55 16 10 C 0.61 16.24 7.63 86.66 0.66 16.90 16 11 O -0.56 -19.11 17.11 -4.07 -0.07 -19.18 16 12 N -0.69 -16.57 5.44 -466.41 -2.54 -19.11 16 13 C 0.14 3.71 5.37 86.38 0.46 4.18 16 14 C 0.08 2.46 2.88 30.84 0.09 2.55 16 15 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 16 C 0.12 4.58 6.05 86.50 0.52 5.10 16 17 N -0.61 -29.77 3.04 -696.73 -2.12 -31.89 16 18 C -0.27 -14.12 9.65 84.03 0.81 -13.31 16 19 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 20 C -0.05 -2.69 4.95 84.86 0.42 -2.27 16 21 N -0.94 -53.90 11.14 21.65 0.24 -53.66 16 22 Si 0.97 43.34 29.59 68.60 2.03 45.37 16 23 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 C 0.14 6.66 5.44 86.35 0.47 7.13 16 27 C 0.05 1.92 6.99 72.08 0.50 2.43 16 28 O -0.39 -12.87 10.13 -148.98 -1.51 -14.38 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.11 1.14 8.02 -2.39 -0.02 1.12 16 34 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.41 8.72 8.33 -92.70 -0.77 7.95 16 38 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 42 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 43 H 0.07 3.45 6.14 -2.39 -0.01 3.44 16 44 H 0.00 -0.05 8.14 -2.39 -0.02 -0.06 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -68.90 388.12 2.21 -66.69 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.23 Total: 18.79 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 5.65 Total: 13.90 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -4.96 Total: -114.06 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.74 Total: -30.69 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -68.90 2.21 -66.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035445234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.816 kcal (2) G-P(sol) polarization free energy of solvation -68.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds