Wall clock time and date at job start Tue Mar 31 2020 18:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33498 * 126.83342 * 2 1 4 4 N 1.20650 * 113.15856 * 179.97438 * 3 2 1 5 5 C 1.30013 * 112.30513 * 359.97438 * 4 3 2 6 6 C 1.50696 * 127.33802 * 180.02562 * 5 4 3 7 7 C 1.53004 * 117.49761 * 8.72370 * 6 5 4 8 8 C 1.53007 * 117.50034 * 300.06399 * 6 5 4 9 9 C 1.37359 * 126.82868 * 179.67874 * 2 1 3 10 10 C 1.47402 * 128.56538 * 0.02917 * 9 2 1 11 11 O 1.21606 * 120.00226 * 90.01754 * 10 9 2 12 12 N 1.34781 * 119.99711 * 270.02224 * 10 9 2 13 13 C 1.46501 * 119.99754 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46770 * 180.02562 * 13 12 10 15 15 H 1.09007 * 109.51140 * 304.99516 * 14 13 12 16 16 C 1.53297 * 109.51160 * 184.90069 * 14 13 12 17 17 N 1.47152 * 108.38691 * 187.77588 * 16 14 13 18 18 C 1.36942 * 120.98041 * 230.55528 * 17 16 14 19 19 H 1.08000 * 119.99654 * 26.23543 * 18 17 16 20 20 C 1.38809 * 119.99690 * 206.23805 * 18 17 16 21 21 N 1.31615 * 120.00506 * 16.90302 * 20 18 17 22 22 Si 1.86802 * 119.99559 * 196.90754 * 20 18 17 23 23 H 1.48495 * 109.47567 * 60.00090 * 22 20 18 24 24 H 1.48503 * 109.46925 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47110 * 299.99802 * 22 20 18 26 26 C 1.47153 * 118.03688 * 50.53037 * 17 16 14 27 27 C 1.53296 * 108.38396 * 309.46809 * 26 17 16 28 28 O 1.42957 * 109.26802 * 52.27556 * 27 26 17 29 29 H 1.08998 * 109.47398 * 0.02947 * 1 2 3 30 30 H 1.08993 * 109.47790 * 240.02481 * 1 2 3 31 31 H 1.09005 * 109.46825 * 120.02447 * 1 2 3 32 32 H 1.08999 * 115.55220 * 154.39215 * 6 5 4 33 33 H 1.08996 * 117.49878 * 0.02562 * 7 6 5 34 34 H 1.08999 * 117.49867 * 145.02343 * 7 6 5 35 35 H 1.08994 * 117.50195 * 214.97778 * 8 6 5 36 36 H 1.08994 * 117.49575 * 359.97438 * 8 6 5 37 37 H 0.96998 * 119.99864 * 359.97438 * 12 10 9 38 38 H 1.08998 * 109.46851 * 299.99574 * 13 12 10 39 39 H 1.08996 * 109.47135 * 59.99866 * 13 12 10 40 40 H 1.09003 * 109.67781 * 307.49392 * 16 14 13 41 41 H 1.08998 * 109.68512 * 68.01081 * 16 14 13 42 42 H 0.96993 * 120.00457 * 180.02562 * 21 20 18 43 43 H 1.08991 * 109.67962 * 69.19082 * 26 17 16 44 44 H 1.08996 * 109.67752 * 189.71037 * 26 17 16 45 45 H 1.08994 * 109.51321 * 172.22673 * 27 26 17 46 46 H 1.09001 * 109.51377 * 292.38008 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4795 0.7833 0.0005 5 6 3.6746 -0.5021 0.0014 6 6 4.9964 -1.2260 0.0028 7 6 6.2602 -0.3886 0.2090 8 6 5.9434 -0.9698 -1.1713 9 6 2.3303 -1.0995 0.0062 10 6 1.9586 -2.5258 0.0136 11 8 1.8060 -3.1199 -1.0365 12 7 1.7878 -3.1716 1.1842 13 6 1.4178 -4.5891 1.1916 14 6 1.2876 -5.0746 2.6367 15 1 2.2111 -4.8640 3.1761 16 6 1.0211 -6.5842 2.6476 17 7 0.7148 -6.9915 4.0280 18 6 1.3637 -8.0464 4.6122 19 1 2.3537 -8.3222 4.2801 20 6 0.7492 -8.7610 5.6312 21 7 -0.5500 -8.6594 5.8155 22 14 1.7663 -9.8670 6.7411 23 1 2.7939 -9.0554 7.4415 24 1 0.8800 -10.5134 7.7422 25 1 2.4334 -10.9110 5.9226 26 6 -0.3092 -6.2314 4.7624 27 6 0.0222 -4.7390 4.6484 28 8 0.1992 -4.3989 3.2713 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3634 -0.5134 0.8901 31 1 -0.3633 -0.5142 -0.8898 32 1 4.9825 -2.2293 0.4285 33 1 6.1356 0.6858 0.3441 34 1 7.0779 -0.8412 0.7699 35 1 6.5528 -1.8044 -1.5178 36 1 5.6103 -0.2780 -1.9448 37 1 1.9098 -2.6978 2.0218 38 1 0.4652 -4.7186 0.6780 39 1 2.1874 -5.1681 0.6813 40 1 0.1737 -6.8120 2.0010 41 1 1.9051 -7.1156 2.2951 42 1 -0.9794 -9.1585 6.5278 43 1 -1.2904 -6.4237 4.3287 44 1 -0.3062 -6.5296 5.8107 45 1 -0.7954 -4.1516 5.0663 46 1 0.9406 -4.5271 5.1959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035451771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:27 Heat of formation + Delta-G solvation = 28.903338 kcal Electronic energy + Delta-G solvation = -28945.461501 eV Core-core repulsion = 24840.261109 eV Total energy + Delta-G solvation = -4105.200391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.10707 -39.71016 -38.48673 -37.78532 -34.98596 -34.35393 -33.99885 -33.10130 -31.60826 -30.72751 -28.43618 -27.57751 -26.00628 -24.85035 -23.83421 -23.20656 -22.72950 -21.86240 -20.85141 -19.85994 -19.43236 -18.17294 -17.94347 -17.03309 -16.79190 -16.17757 -15.98086 -15.72081 -15.09771 -14.93586 -14.79682 -14.44159 -14.16399 -13.82433 -13.69274 -13.57838 -13.30528 -13.15092 -12.97879 -12.78519 -12.49224 -12.28597 -11.95478 -11.81793 -11.65528 -11.53599 -11.17409 -10.89800 -10.80416 -10.75049 -10.48188 -10.35296 -10.28917 -10.03168 -9.81571 -9.73229 -9.59523 -9.15339 -9.12110 -8.59584 -6.81925 -5.89813 -3.33790 1.06818 1.59124 2.30638 2.59277 3.15652 3.31526 3.37656 3.38281 3.47655 3.69547 3.99249 4.15101 4.38107 4.48296 4.56790 4.59807 4.69427 4.78977 5.03605 5.09109 5.10637 5.25205 5.27626 5.29615 5.39502 5.39869 5.44943 5.56478 5.63764 5.71647 5.72307 5.76338 5.76963 5.94636 6.07638 6.20112 6.29903 6.38234 6.41735 6.68251 7.03588 7.38446 7.45550 7.64846 7.77601 7.97764 8.05562 8.27618 9.05590 9.68223 10.24665 11.18355 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.002517 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.209974 B =11122.180432 C =11952.558766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.021 3.979 3 O 0.096 5.904 4 N -0.356 5.356 5 C 0.089 3.911 6 C -0.092 4.092 7 C -0.161 4.161 8 C -0.157 4.157 9 C -0.245 4.245 10 C 0.598 3.402 11 O -0.528 6.528 12 N -0.707 5.707 13 C 0.129 3.871 14 C 0.065 3.935 15 H 0.059 0.941 16 C 0.122 3.878 17 N -0.594 5.594 18 C -0.258 4.258 19 H 0.069 0.931 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.906 3.094 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.281 1.281 26 C 0.139 3.861 27 C 0.040 3.960 28 O -0.390 6.390 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.405 0.595 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.030 0.970 41 H 0.064 0.936 42 H 0.256 0.744 43 H 0.029 0.971 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.111 18.221 -9.604 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.042 4.042 3 O 0.035 5.965 4 N -0.062 5.062 5 C -0.073 4.073 6 C -0.111 4.111 7 C -0.198 4.198 8 C -0.195 4.195 9 C -0.253 4.253 10 C 0.381 3.619 11 O -0.404 6.404 12 N -0.358 5.358 13 C 0.006 3.994 14 C 0.005 3.995 15 H 0.077 0.923 16 C -0.005 4.005 17 N -0.317 5.317 18 C -0.387 4.387 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.735 3.265 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.208 1.208 26 C 0.014 3.986 27 C -0.038 4.038 28 O -0.309 6.309 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.147 0.853 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.240 0.760 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.113 0.887 45 H 0.100 0.900 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.538 18.851 -10.306 22.457 hybrid contribution 0.278 -1.377 1.239 1.873 sum 6.816 17.473 -9.068 20.833 Atomic orbital electron populations 1.20516 0.82957 1.05211 1.05164 1.24639 0.96054 0.85009 0.98545 1.84542 1.11059 1.32911 1.68001 1.73532 0.95913 1.16334 1.20375 1.23711 0.94219 0.88574 1.00784 1.20266 0.84861 0.99690 1.06311 1.23056 0.97005 1.00216 0.99545 1.23059 1.01152 1.03633 0.91650 1.21831 0.92615 0.95313 1.15511 1.16831 0.77048 0.83879 0.84099 1.90830 1.50644 1.67325 1.31615 1.45938 1.69489 1.12187 1.08156 1.21509 1.01623 0.79812 0.96453 1.22808 0.90235 0.95320 0.91148 0.92305 1.21435 0.99374 0.90882 0.88839 1.44059 1.45396 1.34202 1.08089 1.19154 0.96912 1.06670 1.15984 0.91357 1.25045 0.95171 0.97997 1.01319 1.70014 1.07595 1.44088 1.32948 0.86317 0.79332 0.80322 0.80490 1.20957 1.21516 1.20756 1.21446 0.91094 0.86341 0.99755 1.23330 0.99859 0.99403 0.81207 1.87774 1.51466 1.66438 1.25260 0.89168 0.88259 0.88459 0.85328 0.87940 0.87669 0.87543 0.88457 0.76003 0.90291 0.89825 0.95163 0.91728 0.93385 0.95329 0.88743 0.89995 0.94105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.33 36.00 0.37 -0.19 16 2 C 0.02 0.22 7.55 -34.63 -0.26 -0.05 16 3 O 0.10 1.08 11.06 18.64 0.21 1.28 16 4 N -0.36 -4.35 11.71 34.78 0.41 -3.94 16 5 C 0.09 1.07 7.08 -79.77 -0.56 0.50 16 6 C -0.09 -0.94 6.31 -91.77 -0.58 -1.52 16 7 C -0.16 -1.35 10.17 -26.69 -0.27 -1.62 16 8 C -0.16 -1.36 10.24 -26.69 -0.27 -1.64 16 9 C -0.25 -2.99 6.24 -102.89 -0.64 -3.64 16 10 C 0.60 8.20 7.63 -12.53 -0.10 8.10 16 11 O -0.53 -9.02 17.11 5.27 0.09 -8.93 16 12 N -0.71 -8.92 5.50 -61.39 -0.34 -9.26 16 13 C 0.13 1.82 5.34 -4.04 -0.02 1.80 16 14 C 0.06 1.06 2.81 -26.58 -0.07 0.99 16 15 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 16 C 0.12 2.43 6.02 -3.53 -0.02 2.41 16 17 N -0.59 -14.39 3.05 -171.83 -0.52 -14.92 16 18 C -0.26 -6.84 9.65 -15.06 -0.15 -6.99 16 19 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 20 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 21 N -0.90 -25.44 11.14 55.49 0.62 -24.82 16 22 Si 0.91 21.01 29.59 -169.99 -5.03 15.98 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.14 3.20 5.45 -3.53 -0.02 3.18 16 27 C 0.04 0.73 6.98 37.31 0.26 0.99 16 28 O -0.39 -6.85 10.33 -35.23 -0.36 -7.22 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.10 0.92 7.97 -51.93 -0.41 0.50 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.41 4.61 8.46 -40.82 -0.35 4.27 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 42 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.39 6.14 -51.93 -0.32 2.07 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -31.95 388.26 -8.46 -40.41 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.96 Total: 3.21 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.42 Total: 2.35 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.16 Total: -52.93 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.07 Total: -14.87 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.95 -8.46 -40.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035451771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.317 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds