Wall clock time and date at job start Tue Mar 31 2020 18:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33498 * 126.83342 * 2 1 4 4 N 1.20650 * 113.15856 * 179.97438 * 3 2 1 5 5 C 1.30013 * 112.30513 * 359.97438 * 4 3 2 6 6 C 1.50696 * 127.33802 * 180.02562 * 5 4 3 7 7 C 1.53004 * 117.49761 * 8.72370 * 6 5 4 8 8 C 1.53007 * 117.50034 * 300.06399 * 6 5 4 9 9 C 1.37359 * 126.82868 * 179.67874 * 2 1 3 10 10 C 1.47402 * 128.56538 * 0.02917 * 9 2 1 11 11 O 1.21606 * 120.00226 * 90.01754 * 10 9 2 12 12 N 1.34781 * 119.99711 * 270.02224 * 10 9 2 13 13 C 1.46501 * 119.99754 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46770 * 180.02562 * 13 12 10 15 15 H 1.09007 * 109.51140 * 304.99516 * 14 13 12 16 16 C 1.53297 * 109.51160 * 184.90069 * 14 13 12 17 17 N 1.47152 * 108.38691 * 187.77588 * 16 14 13 18 18 C 1.36942 * 120.98041 * 230.55528 * 17 16 14 19 19 H 1.08000 * 119.99654 * 26.23543 * 18 17 16 20 20 C 1.38809 * 119.99690 * 206.23805 * 18 17 16 21 21 N 1.31615 * 120.00506 * 16.90302 * 20 18 17 22 22 Si 1.86802 * 119.99559 * 196.90754 * 20 18 17 23 23 H 1.48495 * 109.47567 * 60.00090 * 22 20 18 24 24 H 1.48503 * 109.46925 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47110 * 299.99802 * 22 20 18 26 26 C 1.47153 * 118.03688 * 50.53037 * 17 16 14 27 27 C 1.53296 * 108.38396 * 309.46809 * 26 17 16 28 28 O 1.42957 * 109.26802 * 52.27556 * 27 26 17 29 29 H 1.08998 * 109.47398 * 0.02947 * 1 2 3 30 30 H 1.08993 * 109.47790 * 240.02481 * 1 2 3 31 31 H 1.09005 * 109.46825 * 120.02447 * 1 2 3 32 32 H 1.08999 * 115.55220 * 154.39215 * 6 5 4 33 33 H 1.08996 * 117.49878 * 0.02562 * 7 6 5 34 34 H 1.08999 * 117.49867 * 145.02343 * 7 6 5 35 35 H 1.08994 * 117.50195 * 214.97778 * 8 6 5 36 36 H 1.08994 * 117.49575 * 359.97438 * 8 6 5 37 37 H 0.96998 * 119.99864 * 359.97438 * 12 10 9 38 38 H 1.08998 * 109.46851 * 299.99574 * 13 12 10 39 39 H 1.08996 * 109.47135 * 59.99866 * 13 12 10 40 40 H 1.09003 * 109.67781 * 307.49392 * 16 14 13 41 41 H 1.08998 * 109.68512 * 68.01081 * 16 14 13 42 42 H 0.96993 * 120.00457 * 180.02562 * 21 20 18 43 43 H 1.08991 * 109.67962 * 69.19082 * 26 17 16 44 44 H 1.08996 * 109.67752 * 189.71037 * 26 17 16 45 45 H 1.08994 * 109.51321 * 172.22673 * 27 26 17 46 46 H 1.09001 * 109.51377 * 292.38008 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4795 0.7833 0.0005 5 6 3.6746 -0.5021 0.0014 6 6 4.9964 -1.2260 0.0028 7 6 6.2602 -0.3886 0.2090 8 6 5.9434 -0.9698 -1.1713 9 6 2.3303 -1.0995 0.0062 10 6 1.9586 -2.5258 0.0136 11 8 1.8060 -3.1199 -1.0365 12 7 1.7878 -3.1716 1.1842 13 6 1.4178 -4.5891 1.1916 14 6 1.2876 -5.0746 2.6367 15 1 2.2111 -4.8640 3.1761 16 6 1.0211 -6.5842 2.6476 17 7 0.7148 -6.9915 4.0280 18 6 1.3637 -8.0464 4.6122 19 1 2.3537 -8.3222 4.2801 20 6 0.7492 -8.7610 5.6312 21 7 -0.5500 -8.6594 5.8155 22 14 1.7663 -9.8670 6.7411 23 1 2.7939 -9.0554 7.4415 24 1 0.8800 -10.5134 7.7422 25 1 2.4334 -10.9110 5.9226 26 6 -0.3092 -6.2314 4.7624 27 6 0.0222 -4.7390 4.6484 28 8 0.1992 -4.3989 3.2713 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3634 -0.5134 0.8901 31 1 -0.3633 -0.5142 -0.8898 32 1 4.9825 -2.2293 0.4285 33 1 6.1356 0.6858 0.3441 34 1 7.0779 -0.8412 0.7699 35 1 6.5528 -1.8044 -1.5178 36 1 5.6103 -0.2780 -1.9448 37 1 1.9098 -2.6978 2.0218 38 1 0.4652 -4.7186 0.6780 39 1 2.1874 -5.1681 0.6813 40 1 0.1737 -6.8120 2.0010 41 1 1.9051 -7.1156 2.2951 42 1 -0.9794 -9.1585 6.5278 43 1 -1.2904 -6.4237 4.3287 44 1 -0.3062 -6.5296 5.8107 45 1 -0.7954 -4.1516 5.0663 46 1 0.9406 -4.5271 5.1959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035451771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:26 Heat of formation + Delta-G solvation = 8.397197 kcal Electronic energy + Delta-G solvation = -28946.350714 eV Core-core repulsion = 24840.261109 eV Total energy + Delta-G solvation = -4106.089604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.97403 -40.89158 -39.94530 -38.50789 -36.52905 -35.81584 -34.84137 -33.91811 -33.35307 -32.31528 -29.48069 -28.90744 -27.43550 -25.87799 -25.04161 -24.67258 -23.41746 -23.24787 -21.95789 -21.32649 -20.34979 -19.16665 -18.89109 -18.75759 -17.77349 -17.50632 -17.22082 -16.87769 -16.47781 -16.19086 -15.91930 -15.77216 -15.49850 -15.25957 -15.00042 -14.63887 -14.46638 -14.41604 -14.13971 -13.71461 -13.63155 -13.23407 -13.07453 -13.00422 -12.68443 -12.63603 -12.54603 -12.53452 -12.32895 -12.19038 -12.10043 -11.87837 -11.53818 -11.41243 -11.26760 -10.79952 -10.62693 -10.54162 -10.44157 -10.25188 -8.75627 -7.91446 -5.38694 0.23846 0.72035 1.25035 1.47515 1.49210 1.56172 1.72479 2.17844 2.48220 2.75515 2.76836 2.89610 3.20394 3.23830 3.48525 3.68748 3.79147 3.86012 3.95467 3.97851 3.98885 4.06752 4.24909 4.35075 4.47715 4.52082 4.57095 4.60592 4.64566 4.66010 4.68867 4.72488 4.76572 4.89509 4.90347 5.00655 5.05873 5.07963 5.13190 5.23638 5.24940 5.55834 5.61576 6.24854 6.31870 6.35489 6.99984 7.06246 7.13511 7.74484 8.27495 9.14417 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.002517 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.209974 B =11122.180432 C =11952.558766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.038 3.962 3 O 0.094 5.906 4 N -0.372 5.372 5 C 0.085 3.915 6 C -0.114 4.114 7 C -0.148 4.148 8 C -0.154 4.154 9 C -0.273 4.273 10 C 0.608 3.392 11 O -0.565 6.565 12 N -0.696 5.696 13 C 0.140 3.860 14 C 0.079 3.921 15 H 0.069 0.931 16 C 0.117 3.883 17 N -0.613 5.613 18 C -0.268 4.268 19 H 0.073 0.927 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.276 1.276 26 C 0.143 3.857 27 C 0.055 3.945 28 O -0.388 6.388 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.414 0.586 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.252 0.748 43 H 0.000 1.000 44 H 0.067 0.933 45 H 0.110 0.890 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.282 19.510 -9.619 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 O 0.035 5.965 4 N -0.079 5.079 5 C -0.077 4.077 6 C -0.133 4.133 7 C -0.185 4.185 8 C -0.192 4.192 9 C -0.281 4.281 10 C 0.393 3.607 11 O -0.444 6.444 12 N -0.346 5.346 13 C 0.016 3.984 14 C 0.020 3.980 15 H 0.086 0.914 16 C -0.010 4.010 17 N -0.338 5.338 18 C -0.398 4.398 19 H 0.091 0.909 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.202 1.202 26 C 0.017 3.983 27 C -0.023 4.023 28 O -0.307 6.307 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.149 0.851 33 H 0.113 0.887 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.107 0.893 37 H 0.250 0.750 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.038 0.962 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.018 0.982 44 H 0.085 0.915 45 H 0.128 0.872 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.721 20.180 -10.323 23.946 hybrid contribution -0.118 -1.770 1.179 2.130 sum 7.602 18.411 -9.144 21.917 Atomic orbital electron populations 1.20729 0.80538 1.07160 1.05524 1.25195 0.97184 0.84154 0.96047 1.84527 1.10947 1.33113 1.67943 1.73520 0.96446 1.16509 1.21427 1.24024 0.94890 0.88604 1.00156 1.20425 0.84857 1.00089 1.07907 1.23105 0.96401 0.99687 0.99345 1.23131 1.00610 1.03993 0.91446 1.21734 0.93376 0.94837 1.18104 1.16886 0.76046 0.84252 0.83503 1.90810 1.52407 1.68301 1.32877 1.45779 1.68857 1.11533 1.08445 1.21305 1.01699 0.80757 0.94598 1.22640 0.90167 0.92700 0.92521 0.91361 1.21600 0.99253 0.93515 0.86605 1.44341 1.45360 1.34194 1.09889 1.19519 0.97237 1.06985 1.16023 0.90937 1.25809 0.96070 0.99775 1.02794 1.70173 1.09107 1.45342 1.33475 0.85302 0.77792 0.78626 0.78486 1.20121 1.22095 1.20167 1.21314 0.89766 0.89496 0.97719 1.23150 1.01259 0.96049 0.81844 1.87792 1.51959 1.66037 1.24897 0.86551 0.87426 0.88242 0.85084 0.88661 0.85706 0.85916 0.89273 0.74979 0.91057 0.88887 0.96198 0.90891 0.93922 0.98208 0.91515 0.87232 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.33 71.23 0.74 -0.21 16 2 C 0.04 0.72 7.55 25.48 0.19 0.91 16 3 O 0.09 1.99 11.06 76.95 0.85 2.84 16 4 N -0.37 -8.76 11.71 -44.79 -0.52 -9.28 16 5 C 0.08 1.96 7.08 45.16 0.32 2.28 16 6 C -0.11 -2.19 6.31 -11.54 -0.07 -2.26 16 7 C -0.15 -2.24 10.17 30.62 0.31 -1.93 16 8 C -0.15 -2.47 10.24 30.62 0.31 -2.16 16 9 C -0.27 -6.35 6.24 -18.74 -0.12 -6.47 16 10 C 0.61 15.96 7.63 86.66 0.66 16.63 16 11 O -0.56 -18.94 17.11 -4.05 -0.07 -19.01 16 12 N -0.70 -16.29 5.50 -466.39 -2.57 -18.86 16 13 C 0.14 3.71 5.34 86.38 0.46 4.17 16 14 C 0.08 2.46 2.81 30.69 0.09 2.55 16 15 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 16 C 0.12 4.58 6.02 86.35 0.52 5.10 16 17 N -0.61 -29.80 3.05 -697.55 -2.13 -31.92 16 18 C -0.27 -14.22 9.65 84.03 0.81 -13.41 16 19 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 20 C -0.05 -2.65 4.95 84.86 0.42 -2.23 16 21 N -0.94 -53.92 11.14 21.65 0.24 -53.68 16 22 Si 0.97 43.33 29.59 68.60 2.03 45.36 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 26 C 0.14 6.63 5.45 86.35 0.47 7.10 16 27 C 0.05 1.91 6.98 72.08 0.50 2.41 16 28 O -0.39 -12.84 10.33 -148.98 -1.54 -14.38 16 29 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.09 1.59 7.97 -2.39 -0.02 1.57 16 34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 1.53 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.41 8.46 8.46 -92.71 -0.78 7.68 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 42 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 43 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.07 3.46 6.14 -2.39 -0.01 3.45 16 45 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -69.43 388.26 2.13 -67.30 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.22 Total: 19.16 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 5.62 Total: 12.48 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -4.98 Total: -113.74 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.76 Total: -30.56 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -69.43 2.13 -67.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035451771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.694 kcal (2) G-P(sol) polarization free energy of solvation -69.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds