Wall clock time and date at job start Tue Mar 31 2020 18:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33495 * 126.82902 * 2 1 4 4 N 1.20667 * 113.15506 * 179.97438 * 3 2 1 5 5 C 1.30019 * 112.29849 * 359.72936 * 4 3 2 6 6 C 1.50695 * 127.33028 * 180.27189 * 5 4 3 7 7 C 1.53007 * 117.50102 * 8.77548 * 6 5 4 8 8 C 1.53004 * 117.50274 * 300.15161 * 6 5 4 9 9 C 1.37362 * 126.82961 * 179.97438 * 2 1 3 10 10 C 1.47400 * 128.56521 * 359.96581 * 9 2 1 11 11 O 1.21611 * 119.99800 * 90.01856 * 10 9 2 12 12 N 1.34773 * 120.00221 * 270.02909 * 10 9 2 13 13 C 1.46494 * 120.00525 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47407 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.51140 * 60.10415 * 14 13 12 16 16 C 1.53717 * 109.44245 * 180.38673 * 14 13 12 17 17 N 1.47154 * 108.16009 * 172.37554 * 16 14 13 18 18 C 1.36931 * 120.97887 * 129.43492 * 17 16 14 19 19 H 1.08005 * 120.00440 * 333.49504 * 18 17 16 20 20 C 1.38821 * 119.99883 * 153.49763 * 18 17 16 21 21 N 1.31619 * 119.99631 * 343.07823 * 20 18 17 22 22 Si 1.86796 * 119.99899 * 162.80446 * 20 18 17 23 23 H 1.48494 * 109.47313 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47337 * 119.99994 * 22 20 18 25 25 H 1.48503 * 109.46949 * 240.00023 * 22 20 18 26 26 C 1.47149 * 118.03579 * 309.15864 * 17 16 14 27 27 C 1.53296 * 108.38694 * 50.78628 * 26 17 16 28 28 O 1.42963 * 109.22250 * 307.69880 * 27 26 17 29 29 H 1.08999 * 109.46820 * 270.00395 * 1 2 3 30 30 H 1.08997 * 109.46899 * 30.00017 * 1 2 3 31 31 H 1.09000 * 109.47207 * 150.00232 * 1 2 3 32 32 H 1.09003 * 115.54905 * 154.47983 * 6 5 4 33 33 H 1.08991 * 117.49703 * 359.97438 * 7 6 5 34 34 H 1.09002 * 117.49523 * 145.01860 * 7 6 5 35 35 H 1.08998 * 117.49833 * 214.98140 * 8 6 5 36 36 H 1.09001 * 117.49685 * 359.97438 * 8 6 5 37 37 H 0.97008 * 119.99748 * 359.97438 * 12 10 9 38 38 H 1.09007 * 109.46800 * 59.99495 * 13 12 10 39 39 H 1.08997 * 109.46982 * 300.00091 * 13 12 10 40 40 H 1.08999 * 109.83737 * 52.69713 * 16 14 13 41 41 H 1.09001 * 109.74797 * 292.00152 * 16 14 13 42 42 H 0.97003 * 119.99304 * 179.97438 * 21 20 18 43 43 H 1.08993 * 109.68413 * 170.50997 * 26 17 16 44 44 H 1.08997 * 109.68203 * 291.02940 * 26 17 16 45 45 H 1.09004 * 109.50741 * 67.61742 * 27 26 17 46 46 H 1.08993 * 109.51437 * 187.72356 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4797 0.7833 0.0005 5 6 3.6746 -0.5022 0.0066 6 6 4.9964 -1.2260 0.0148 7 6 6.2595 -0.3880 0.2233 8 6 5.9481 -0.9723 -1.1560 9 6 2.3304 -1.0995 0.0005 10 6 1.9587 -2.5258 0.0018 11 8 1.8052 -3.1151 -1.0508 12 7 1.7888 -3.1769 1.1696 13 6 1.4188 -4.5943 1.1710 14 6 1.2909 -5.0867 2.6139 15 1 0.5207 -4.5117 3.1279 16 6 0.9122 -6.5765 2.6145 17 7 0.9767 -7.0655 4.0009 18 6 -0.0677 -7.7576 4.5535 19 1 -1.0722 -7.6016 4.1886 20 6 0.1647 -8.6597 5.5828 21 7 1.3837 -9.1025 5.8070 22 14 -1.2515 -9.2391 6.6542 23 1 -2.5100 -8.5924 6.2036 24 1 -1.3850 -10.7139 6.5433 25 1 -0.9852 -8.8712 8.0681 26 6 2.1991 -6.7943 4.7739 27 6 2.5173 -5.2986 4.6663 28 8 2.5408 -4.9203 3.2878 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.9808 -2.2284 0.4426 33 1 6.1344 0.6868 0.3542 34 1 7.0750 -0.8392 0.7886 35 1 6.5588 -1.8077 -1.4983 36 1 5.6180 -0.2822 -1.9325 37 1 1.9114 -2.7068 2.0092 38 1 2.1881 -5.1711 0.6574 39 1 0.4659 -4.7216 0.6574 40 1 1.6126 -7.1364 1.9948 41 1 -0.0997 -6.6994 2.2286 42 1 1.5460 -9.7326 6.5265 43 1 2.0399 -7.0614 5.8185 44 1 3.0267 -7.3762 4.3682 45 1 1.7513 -4.7250 5.1882 46 1 3.4903 -5.1001 5.1156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035451772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:31 Heat of formation + Delta-G solvation = 28.803574 kcal Electronic energy + Delta-G solvation = -28992.794250 eV Core-core repulsion = 24887.589533 eV Total energy + Delta-G solvation = -4105.204717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.09987 -39.70887 -38.47427 -37.74736 -34.98409 -34.34441 -34.00948 -33.09374 -31.59840 -30.72045 -28.45340 -27.58337 -26.00158 -24.83572 -23.82398 -23.20014 -22.68149 -21.85196 -20.82555 -19.84560 -19.44532 -18.17215 -17.94103 -17.03698 -16.76400 -16.20151 -15.98161 -15.65358 -15.14024 -14.99862 -14.67180 -14.44309 -14.19708 -13.82166 -13.70232 -13.62195 -13.31121 -13.15332 -12.98102 -12.78461 -12.46675 -12.26198 -11.91471 -11.79923 -11.63884 -11.51838 -11.18496 -10.92805 -10.77475 -10.71546 -10.48386 -10.33777 -10.27026 -10.04142 -9.79050 -9.72481 -9.60594 -9.15368 -9.10517 -8.60302 -6.82014 -5.90213 -3.34155 1.06131 1.60902 2.29574 2.60098 3.15547 3.29685 3.37930 3.39809 3.52056 3.71404 4.01584 4.15188 4.37769 4.50837 4.58681 4.62861 4.72427 4.80767 5.02046 5.03377 5.10388 5.23252 5.27440 5.33840 5.39212 5.42429 5.45378 5.54884 5.64676 5.71275 5.75309 5.77725 5.81445 5.95411 6.07944 6.20737 6.30075 6.38187 6.42018 6.68261 7.03616 7.39497 7.45706 7.65344 7.77682 7.98473 8.06021 8.27224 9.05262 9.67917 10.24533 11.17838 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002491 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.640286 B =11237.130907 C =11933.160886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.017 3.983 3 O 0.096 5.904 4 N -0.356 5.356 5 C 0.091 3.909 6 C -0.093 4.093 7 C -0.160 4.160 8 C -0.157 4.157 9 C -0.243 4.243 10 C 0.597 3.403 11 O -0.528 6.528 12 N -0.706 5.706 13 C 0.129 3.871 14 C 0.065 3.935 15 H 0.060 0.940 16 C 0.122 3.878 17 N -0.594 5.594 18 C -0.256 4.256 19 H 0.070 0.930 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.905 3.095 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.288 1.288 26 C 0.139 3.861 27 C 0.040 3.960 28 O -0.390 6.390 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.406 0.594 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.031 0.969 41 H 0.065 0.935 42 H 0.255 0.745 43 H 0.094 0.906 44 H 0.028 0.972 45 H 0.041 0.959 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.092 18.955 -9.527 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 O 0.035 5.965 4 N -0.061 5.061 5 C -0.071 4.071 6 C -0.112 4.112 7 C -0.198 4.198 8 C -0.195 4.195 9 C -0.250 4.250 10 C 0.381 3.619 11 O -0.405 6.405 12 N -0.356 5.356 13 C 0.006 3.994 14 C 0.005 3.995 15 H 0.078 0.922 16 C -0.005 4.005 17 N -0.318 5.318 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.215 1.215 26 C 0.014 3.986 27 C -0.038 4.038 28 O -0.309 6.309 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.241 0.759 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.046 0.954 45 H 0.059 0.941 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.943 19.508 -10.230 22.378 hybrid contribution -1.065 -1.110 1.227 1.967 sum 2.879 18.398 -9.003 20.684 Atomic orbital electron populations 1.20489 0.83053 1.05351 1.04803 1.24613 0.96013 0.85079 0.98965 1.84538 1.11075 1.32872 1.68044 1.73548 0.95832 1.16357 1.20406 1.23722 0.94284 0.88515 1.00548 1.20291 0.84761 0.99846 1.06273 1.23040 0.97102 1.00119 0.99509 1.23047 1.01180 1.03624 0.91684 1.21854 0.92662 0.95277 1.15213 1.16840 0.77085 0.83879 0.84139 1.90832 1.50655 1.67640 1.31344 1.45911 1.69506 1.12006 1.08204 1.21525 1.01608 0.79823 0.96460 1.22901 0.87096 0.98833 0.90707 0.92238 1.21527 0.99713 0.90544 0.88762 1.44095 1.16668 1.63904 1.07106 1.19234 0.86951 1.16569 1.15789 0.91258 1.25065 0.96598 0.96620 1.01357 1.70043 1.19543 1.32783 1.32229 0.86181 0.81730 0.78216 0.80396 1.20187 1.21591 1.21467 1.21441 0.88349 0.89526 0.99309 1.23325 1.00372 0.98908 0.81154 1.87774 1.32146 1.86738 1.24277 0.88532 0.89061 0.88607 0.85138 0.87988 0.87634 0.87541 0.88507 0.75911 0.90409 0.89834 0.95148 0.91703 0.93503 0.88760 0.95356 0.94084 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.33 36.00 0.37 -0.13 16 2 C 0.02 0.17 7.55 -34.63 -0.26 -0.09 16 3 O 0.10 1.07 11.06 18.65 0.21 1.28 16 4 N -0.36 -4.40 11.71 34.78 0.41 -3.99 16 5 C 0.09 1.12 7.08 -79.77 -0.56 0.56 16 6 C -0.09 -1.01 6.31 -91.77 -0.58 -1.59 16 7 C -0.16 -1.43 10.16 -26.72 -0.27 -1.70 16 8 C -0.16 -1.45 10.23 -26.73 -0.27 -1.73 16 9 C -0.24 -2.98 6.24 -102.89 -0.64 -3.62 16 10 C 0.60 8.21 7.60 -12.53 -0.10 8.11 16 11 O -0.53 -9.03 17.11 5.27 0.09 -8.94 16 12 N -0.71 -8.94 5.44 -61.40 -0.33 -9.27 16 13 C 0.13 1.81 5.37 -4.05 -0.02 1.79 16 14 C 0.06 1.06 2.88 -26.36 -0.08 0.98 16 15 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 16 C 0.12 2.42 6.05 -3.31 -0.02 2.40 16 17 N -0.59 -14.37 3.04 -171.57 -0.52 -14.89 16 18 C -0.26 -6.77 9.65 -15.06 -0.15 -6.92 16 19 H 0.07 1.79 7.89 -52.48 -0.41 1.37 16 20 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 21 N -0.90 -25.43 11.14 55.49 0.62 -24.81 16 22 Si 0.91 20.96 29.59 -169.99 -5.03 15.93 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.14 3.21 5.44 -3.53 -0.02 3.19 16 27 C 0.04 0.74 6.99 37.31 0.26 1.00 16 28 O -0.39 -6.90 10.13 -35.23 -0.36 -7.26 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.65 8.11 -51.93 -0.42 0.23 16 32 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.10 0.95 7.97 -51.93 -0.41 0.54 16 34 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.41 4.68 8.33 -40.82 -0.34 4.34 16 38 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.22 7.96 -51.93 -0.41 0.80 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.09 2.39 6.14 -51.93 -0.32 2.08 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -32.04 387.94 -8.45 -40.49 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.95 Total: 3.39 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.42 Total: 2.24 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.17 Total: -52.97 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.06 Total: -14.93 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.04 -8.45 -40.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035451772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.292 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds