Wall clock time and date at job start Tue Mar 31 2020 18:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33495 * 126.82902 * 2 1 4 4 N 1.20667 * 113.15506 * 179.97438 * 3 2 1 5 5 C 1.30019 * 112.29849 * 359.72936 * 4 3 2 6 6 C 1.50695 * 127.33028 * 180.27189 * 5 4 3 7 7 C 1.53007 * 117.50102 * 8.77548 * 6 5 4 8 8 C 1.53004 * 117.50274 * 300.15161 * 6 5 4 9 9 C 1.37362 * 126.82961 * 179.97438 * 2 1 3 10 10 C 1.47400 * 128.56521 * 359.96581 * 9 2 1 11 11 O 1.21611 * 119.99800 * 90.01856 * 10 9 2 12 12 N 1.34773 * 120.00221 * 270.02909 * 10 9 2 13 13 C 1.46494 * 120.00525 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47407 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.51140 * 60.10415 * 14 13 12 16 16 C 1.53717 * 109.44245 * 180.38673 * 14 13 12 17 17 N 1.47154 * 108.16009 * 172.37554 * 16 14 13 18 18 C 1.36931 * 120.97887 * 129.43492 * 17 16 14 19 19 H 1.08005 * 120.00440 * 333.49504 * 18 17 16 20 20 C 1.38821 * 119.99883 * 153.49763 * 18 17 16 21 21 N 1.31619 * 119.99631 * 343.07823 * 20 18 17 22 22 Si 1.86796 * 119.99899 * 162.80446 * 20 18 17 23 23 H 1.48494 * 109.47313 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47337 * 119.99994 * 22 20 18 25 25 H 1.48503 * 109.46949 * 240.00023 * 22 20 18 26 26 C 1.47149 * 118.03579 * 309.15864 * 17 16 14 27 27 C 1.53296 * 108.38694 * 50.78628 * 26 17 16 28 28 O 1.42963 * 109.22250 * 307.69880 * 27 26 17 29 29 H 1.08999 * 109.46820 * 270.00395 * 1 2 3 30 30 H 1.08997 * 109.46899 * 30.00017 * 1 2 3 31 31 H 1.09000 * 109.47207 * 150.00232 * 1 2 3 32 32 H 1.09003 * 115.54905 * 154.47983 * 6 5 4 33 33 H 1.08991 * 117.49703 * 359.97438 * 7 6 5 34 34 H 1.09002 * 117.49523 * 145.01860 * 7 6 5 35 35 H 1.08998 * 117.49833 * 214.98140 * 8 6 5 36 36 H 1.09001 * 117.49685 * 359.97438 * 8 6 5 37 37 H 0.97008 * 119.99748 * 359.97438 * 12 10 9 38 38 H 1.09007 * 109.46800 * 59.99495 * 13 12 10 39 39 H 1.08997 * 109.46982 * 300.00091 * 13 12 10 40 40 H 1.08999 * 109.83737 * 52.69713 * 16 14 13 41 41 H 1.09001 * 109.74797 * 292.00152 * 16 14 13 42 42 H 0.97003 * 119.99304 * 179.97438 * 21 20 18 43 43 H 1.08993 * 109.68413 * 170.50997 * 26 17 16 44 44 H 1.08997 * 109.68203 * 291.02940 * 26 17 16 45 45 H 1.09004 * 109.50741 * 67.61742 * 27 26 17 46 46 H 1.08993 * 109.51437 * 187.72356 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4797 0.7833 0.0005 5 6 3.6746 -0.5022 0.0066 6 6 4.9964 -1.2260 0.0148 7 6 6.2595 -0.3880 0.2233 8 6 5.9481 -0.9723 -1.1560 9 6 2.3304 -1.0995 0.0005 10 6 1.9587 -2.5258 0.0018 11 8 1.8052 -3.1151 -1.0508 12 7 1.7888 -3.1769 1.1696 13 6 1.4188 -4.5943 1.1710 14 6 1.2909 -5.0867 2.6139 15 1 0.5207 -4.5117 3.1279 16 6 0.9122 -6.5765 2.6145 17 7 0.9767 -7.0655 4.0009 18 6 -0.0677 -7.7576 4.5535 19 1 -1.0722 -7.6016 4.1886 20 6 0.1647 -8.6597 5.5828 21 7 1.3837 -9.1025 5.8070 22 14 -1.2515 -9.2391 6.6542 23 1 -2.5100 -8.5924 6.2036 24 1 -1.3850 -10.7139 6.5433 25 1 -0.9852 -8.8712 8.0681 26 6 2.1991 -6.7943 4.7739 27 6 2.5173 -5.2986 4.6663 28 8 2.5408 -4.9203 3.2878 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.9808 -2.2284 0.4426 33 1 6.1344 0.6868 0.3542 34 1 7.0750 -0.8392 0.7886 35 1 6.5588 -1.8077 -1.4983 36 1 5.6180 -0.2822 -1.9325 37 1 1.9114 -2.7068 2.0092 38 1 2.1881 -5.1711 0.6574 39 1 0.4659 -4.7216 0.6574 40 1 1.6126 -7.1364 1.9948 41 1 -0.0997 -6.6994 2.2286 42 1 1.5460 -9.7326 6.5265 43 1 2.0399 -7.0614 5.8185 44 1 3.0267 -7.3762 4.3682 45 1 1.7513 -4.7250 5.1882 46 1 3.4903 -5.1001 5.1156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035451772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:30 Heat of formation + Delta-G solvation = 8.190237 kcal Electronic energy + Delta-G solvation = -28993.688112 eV Core-core repulsion = 24887.589533 eV Total energy + Delta-G solvation = -4106.098579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.97164 -40.88862 -39.93703 -38.51677 -36.53401 -35.80042 -34.83965 -33.91677 -33.34615 -32.30337 -29.48392 -28.89982 -27.43210 -25.88842 -25.03656 -24.66903 -23.42041 -23.24143 -21.93274 -21.34132 -20.35233 -19.16646 -18.89127 -18.76159 -17.73040 -17.55423 -17.21384 -16.87846 -16.45511 -16.20705 -16.01589 -15.63847 -15.50184 -15.32485 -15.01156 -14.64639 -14.44281 -14.43301 -14.08733 -13.71534 -13.62268 -13.22450 -13.07852 -13.02086 -12.72990 -12.65126 -12.54601 -12.49931 -12.32735 -12.17087 -12.05893 -11.88422 -11.54776 -11.41740 -11.26020 -10.80530 -10.62656 -10.55092 -10.43242 -10.24144 -8.75850 -7.91467 -5.38813 0.24932 0.72073 1.24227 1.46318 1.48609 1.58874 1.74454 2.17858 2.48268 2.75974 2.76324 2.89834 3.20628 3.24115 3.48787 3.70066 3.77775 3.85579 3.95669 3.97867 3.98620 4.06834 4.24464 4.35785 4.47093 4.51385 4.60457 4.61708 4.64518 4.64709 4.68398 4.72777 4.77109 4.88907 4.89939 5.00063 5.05923 5.08643 5.12323 5.23088 5.25437 5.55824 5.61723 6.24908 6.32191 6.36143 7.00443 7.06045 7.14287 7.74271 8.27624 9.14606 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002491 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.640286 B =11237.130907 C =11933.160886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.038 3.962 3 O 0.095 5.905 4 N -0.371 5.371 5 C 0.084 3.916 6 C -0.115 4.115 7 C -0.147 4.147 8 C -0.154 4.154 9 C -0.273 4.273 10 C 0.607 3.393 11 O -0.566 6.566 12 N -0.695 5.695 13 C 0.140 3.860 14 C 0.079 3.921 15 H 0.073 0.927 16 C 0.116 3.884 17 N -0.613 5.613 18 C -0.264 4.264 19 H 0.075 0.925 20 C -0.051 4.051 21 N -0.936 5.936 22 Si 0.970 3.030 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.289 1.289 26 C 0.143 3.857 27 C 0.055 3.945 28 O -0.390 6.390 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.414 0.586 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.018 0.982 41 H 0.075 0.925 42 H 0.251 0.749 43 H 0.066 0.934 44 H -0.002 1.002 45 H 0.052 0.948 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 20.871 -9.570 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.026 4.026 3 O 0.035 5.965 4 N -0.078 5.078 5 C -0.078 4.078 6 C -0.134 4.134 7 C -0.184 4.184 8 C -0.192 4.192 9 C -0.281 4.281 10 C 0.392 3.608 11 O -0.445 6.445 12 N -0.345 5.345 13 C 0.016 3.984 14 C 0.019 3.981 15 H 0.091 0.909 16 C -0.010 4.010 17 N -0.338 5.338 18 C -0.394 4.394 19 H 0.092 0.908 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.798 3.202 23 H -0.188 1.188 24 H -0.222 1.222 25 H -0.216 1.216 26 C 0.018 3.982 27 C -0.023 4.023 28 O -0.309 6.309 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.109 0.891 37 H 0.251 0.749 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.036 0.964 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.016 0.984 45 H 0.070 0.930 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.902 21.469 -10.276 23.978 hybrid contribution -0.756 -1.703 1.176 2.203 sum 2.147 19.766 -9.100 21.866 Atomic orbital electron populations 1.20742 0.80229 1.06361 1.06463 1.25240 0.97281 0.84011 0.96042 1.84520 1.10912 1.33114 1.67910 1.73534 0.96481 1.16396 1.21423 1.23986 0.94900 0.88659 1.00223 1.20393 0.85077 1.00002 1.07930 1.23088 0.96369 0.99683 0.99281 1.23117 1.00567 1.03956 0.91523 1.21748 0.93331 0.94878 1.18112 1.16900 0.76063 0.84277 0.83532 1.90811 1.52425 1.68628 1.32612 1.45759 1.68943 1.11318 1.08475 1.21338 1.02038 0.80398 0.94646 1.22754 0.86891 0.96395 0.92026 0.90937 1.21695 1.00175 0.92628 0.86492 1.44378 1.16395 1.64049 1.08934 1.19593 0.87847 1.16222 1.15719 0.90769 1.25837 0.98805 0.97231 1.02778 1.70199 1.21496 1.33715 1.32799 0.85163 0.79409 0.77183 0.78413 1.18783 1.22168 1.21554 1.21299 0.87125 0.92470 0.97334 1.23140 1.02088 0.95205 0.81818 1.87793 1.32938 1.86226 1.23962 0.86322 0.86682 0.88901 0.85596 0.88462 0.85872 0.86118 0.89076 0.74943 0.91659 0.88378 0.96412 0.90664 0.93987 0.91519 0.98420 0.93012 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.33 71.24 0.74 -0.05 16 2 C 0.04 0.69 7.55 25.48 0.19 0.89 16 3 O 0.10 1.98 11.06 76.96 0.85 2.83 16 4 N -0.37 -8.86 11.71 -44.77 -0.52 -9.38 16 5 C 0.08 2.01 7.08 45.15 0.32 2.33 16 6 C -0.11 -2.43 6.31 -11.54 -0.07 -2.50 16 7 C -0.15 -2.45 10.16 30.60 0.31 -2.14 16 8 C -0.15 -2.70 10.23 30.60 0.31 -2.39 16 9 C -0.27 -6.39 6.24 -18.75 -0.12 -6.51 16 10 C 0.61 16.04 7.60 86.66 0.66 16.70 16 11 O -0.57 -19.04 17.11 -4.07 -0.07 -19.11 16 12 N -0.69 -16.39 5.44 -466.41 -2.54 -18.93 16 13 C 0.14 3.69 5.37 86.38 0.46 4.16 16 14 C 0.08 2.44 2.88 30.84 0.09 2.53 16 15 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 16 C 0.12 4.56 6.05 86.50 0.52 5.08 16 17 N -0.61 -29.72 3.04 -696.72 -2.12 -31.84 16 18 C -0.26 -13.93 9.65 84.04 0.81 -13.12 16 19 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 20 C -0.05 -2.76 4.95 84.86 0.42 -2.34 16 21 N -0.94 -54.07 11.14 21.65 0.24 -53.82 16 22 Si 0.97 43.25 29.59 68.60 2.03 45.28 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 26 C 0.14 6.70 5.44 86.35 0.47 7.17 16 27 C 0.06 1.95 6.99 72.08 0.50 2.45 16 28 O -0.39 -13.12 10.13 -148.98 -1.51 -14.63 16 29 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 1.03 8.11 -2.39 -0.02 1.01 16 32 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.10 1.72 7.97 -2.39 -0.02 1.70 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.41 8.61 8.33 -92.70 -0.77 7.84 16 38 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.10 2.36 8.14 -2.39 -0.02 2.35 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 2.74 7.96 -2.39 -0.02 2.73 16 42 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.07 3.47 6.14 -2.39 -0.01 3.46 16 44 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -70.07 387.94 2.21 -67.86 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.23 Total: 19.49 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.62 Total: 12.25 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -4.94 Total: -113.98 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.73 Total: -30.91 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -70.07 2.21 -67.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035451772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.055 kcal (2) G-P(sol) polarization free energy of solvation -70.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds