Wall clock time and date at job start Tue Mar 31 2020 19:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35266 * 126.70540 * 2 1 4 4 C 1.41941 * 103.96040 * 180.02562 * 3 2 1 5 5 O 1.35704 * 126.88049 * 179.97438 * 4 3 2 6 6 C 1.42895 * 116.99828 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46985 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00207 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99895 * 179.97438 * 7 6 5 10 10 C 1.47145 * 121.01209 * 0.02562 * 9 7 6 11 11 C 1.53046 * 107.67443 * 237.42738 * 10 9 7 12 12 C 1.51146 * 111.10610 * 305.57315 * 11 10 9 13 13 H 1.09003 * 108.46583 * 174.64967 * 12 11 10 14 14 C 1.53995 * 113.17451 * 55.14190 * 12 11 10 15 15 H 1.09003 * 112.71543 * 75.20414 * 14 12 11 16 16 C 1.56012 * 100.38917 * 196.35311 * 14 12 11 17 17 C 1.54514 * 102.70223 * 36.67125 * 16 14 12 18 18 N 1.46470 * 113.21814 * 294.93961 * 12 11 10 19 19 C 1.36937 * 126.05018 * 330.44903 * 18 12 11 20 20 H 1.07997 * 120.00091 * 10.46630 * 19 18 12 21 21 C 1.38815 * 119.99737 * 190.45492 * 19 18 12 22 22 N 1.31619 * 119.99734 * 195.02963 * 21 19 18 23 23 Si 1.86799 * 120.00085 * 15.02764 * 21 19 18 24 24 H 1.48503 * 109.47299 * 174.48021 * 23 21 19 25 25 H 1.48507 * 109.46894 * 54.48149 * 23 21 19 26 26 H 1.48498 * 109.47215 * 294.48333 * 23 21 19 27 27 C 1.46530 * 121.01079 * 179.97438 * 9 7 6 28 28 N 1.30618 * 106.23682 * 0.23542 * 4 3 2 29 29 O 1.20918 * 111.49877 * 359.57882 * 28 4 3 30 30 H 1.08997 * 109.47202 * 90.00599 * 1 2 3 31 31 H 1.09003 * 109.47106 * 210.00451 * 1 2 3 32 32 H 1.08993 * 109.47616 * 330.00480 * 1 2 3 33 33 H 1.07998 * 128.02380 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47531 * 59.99614 * 6 5 4 35 35 H 1.08996 * 109.47105 * 299.99327 * 6 5 4 36 36 H 1.08998 * 109.81810 * 117.88608 * 10 9 7 37 37 H 1.08997 * 109.86646 * 356.99858 * 10 9 7 38 38 H 1.09002 * 109.15391 * 185.15433 * 11 10 9 39 39 H 1.09004 * 109.10731 * 65.96262 * 11 10 9 40 40 H 1.09001 * 110.77862 * 155.14749 * 16 14 12 41 41 H 1.08994 * 110.78210 * 278.58038 * 16 14 12 42 42 H 1.09005 * 110.00726 * 218.06415 * 17 16 14 43 43 H 1.08996 * 109.80860 * 96.81938 * 17 16 14 44 44 H 0.96999 * 120.00673 * 4.10124 * 22 21 19 45 45 H 1.08994 * 109.34471 * 244.66414 * 27 9 7 46 46 H 1.09000 * 109.34181 * 4.20089 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6245 0.5357 -0.0006 5 8 4.7953 1.2219 -0.0013 6 6 5.9987 0.4514 -0.0024 7 6 7.1878 1.3772 -0.0037 8 8 7.0211 2.5785 -0.0033 9 7 8.4366 0.8702 -0.0044 10 6 8.6646 -0.5835 -0.0044 11 6 9.5129 -0.9208 1.2240 12 6 10.7805 -0.0981 1.2526 13 1 11.3028 -0.3012 2.1876 14 6 10.5208 1.4180 1.1797 15 1 10.1500 1.8272 2.1196 16 6 11.9438 1.9291 0.7954 17 6 12.4554 0.8253 -0.1571 18 7 11.6884 -0.3974 0.1429 19 6 11.8077 -1.6015 -0.4983 20 1 11.0882 -2.3854 -0.3135 21 6 12.8535 -1.8144 -1.3860 22 7 12.8139 -2.8342 -2.2171 23 14 14.3169 -0.6536 -1.4010 24 1 15.3487 -1.1697 -2.3361 25 1 14.8896 -0.5614 -0.0339 26 1 13.8759 0.6932 -1.8448 27 6 9.6085 1.7498 -0.0062 28 7 3.4764 -0.7621 -0.0061 29 8 2.3084 -1.0749 -0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5137 33 1 2.0310 2.1263 -0.0004 34 1 6.0270 -0.1771 -0.8925 35 1 6.0284 -0.1773 0.8874 36 1 9.1952 -0.8743 -0.9111 37 1 7.7107 -1.1080 0.0498 38 1 9.7737 -1.9789 1.1989 39 1 8.9336 -0.7167 2.1246 40 1 11.8845 2.8889 0.2823 41 1 12.5806 1.9995 1.6772 42 1 13.5174 0.6483 0.0134 43 1 12.2881 1.1237 -1.1920 44 1 12.0282 -3.4021 -2.2511 45 1 10.1606 1.6137 -0.9361 46 1 9.2816 2.7869 0.0685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036741477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:24 Heat of formation + Delta-G solvation = 16.772569 kcal Electronic energy + Delta-G solvation = -29566.074498 eV Core-core repulsion = 25460.348077 eV Total energy + Delta-G solvation = -4105.726421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.98626 -41.84134 -40.49143 -39.36070 -36.79587 -34.91788 -34.78695 -33.61850 -33.33312 -32.07984 -30.40727 -29.12167 -28.57303 -26.70593 -25.19022 -24.52818 -24.37448 -22.57985 -22.41941 -21.10395 -19.80227 -19.29695 -18.99480 -18.90663 -18.11845 -17.90589 -17.42065 -17.22725 -17.09099 -16.60579 -15.98934 -15.71175 -15.35570 -15.12953 -14.91184 -14.66870 -14.61759 -14.35360 -14.15514 -13.97878 -13.91605 -13.67555 -13.29543 -13.24492 -12.98357 -12.94346 -12.79299 -12.46422 -12.26989 -12.14577 -12.10250 -11.66362 -11.47378 -11.33745 -11.05067 -10.93122 -10.67799 -10.54521 -10.31864 -9.81570 -9.01262 -8.55089 -5.37198 0.42039 1.08938 1.15327 1.25364 1.42140 1.50361 1.71338 2.03470 2.28354 2.58518 3.04705 3.13079 3.15766 3.30780 3.60016 3.72484 3.76776 3.78678 3.87054 3.88134 3.95434 4.01908 4.04427 4.30370 4.30988 4.36702 4.39963 4.50053 4.67640 4.68572 4.76217 4.78541 4.81863 4.83899 4.89907 4.98868 5.08575 5.10933 5.20593 5.24663 5.26341 5.35669 5.67360 5.76551 6.16388 6.17937 6.82114 6.88328 7.19261 7.53655 8.18871 8.98312 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021572 B = 0.002634 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.681095 B =10626.337294 C =11406.463355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.009 3.991 3 C -0.248 4.248 4 C 0.187 3.813 5 O -0.277 6.277 6 C 0.053 3.947 7 C 0.522 3.478 8 O -0.563 6.563 9 N -0.593 5.593 10 C 0.117 3.883 11 C -0.123 4.123 12 C 0.159 3.841 13 H 0.026 0.974 14 C -0.102 4.102 15 H 0.115 0.885 16 C -0.114 4.114 17 C 0.096 3.904 18 N -0.619 5.619 19 C -0.286 4.286 20 H 0.063 0.937 21 C -0.084 4.084 22 N -0.972 5.972 23 Si 1.103 2.897 24 H -0.322 1.322 25 H -0.288 1.288 26 H -0.257 1.257 27 C 0.127 3.873 28 N -0.434 5.434 29 O 0.092 5.908 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.198 0.802 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.024 0.976 43 H 0.032 0.968 44 H 0.248 0.752 45 H 0.058 0.942 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.389 9.302 8.440 26.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 C -0.270 4.270 4 C -0.010 4.010 5 O -0.183 6.183 6 C -0.025 4.025 7 C 0.310 3.690 8 O -0.442 6.442 9 N -0.326 5.326 10 C -0.005 4.005 11 C -0.162 4.162 12 C 0.053 3.947 13 H 0.044 0.956 14 C -0.122 4.122 15 H 0.133 0.867 16 C -0.152 4.152 17 C -0.029 4.029 18 N -0.346 5.346 19 C -0.414 4.414 20 H 0.081 0.919 21 C -0.276 4.276 22 N -0.618 5.618 23 Si 0.933 3.067 24 H -0.252 1.252 25 H -0.216 1.216 26 H -0.182 1.182 27 C 0.005 3.995 28 N -0.162 5.162 29 O 0.032 5.968 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.215 0.785 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.042 0.958 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.108 9.412 7.710 24.363 hybrid contribution -0.949 -0.465 0.295 1.097 sum -22.056 8.947 8.005 25.112 Atomic orbital electron populations 1.20684 0.79761 1.06651 1.05983 1.25192 0.98135 0.84084 0.98012 1.22179 0.87031 1.03227 1.14525 1.22499 0.88746 0.88635 1.01111 1.86214 1.10745 1.31822 1.89536 1.22483 0.81271 0.92953 1.05767 1.20113 0.84065 0.88467 0.76404 1.90691 1.85676 1.16533 1.51269 1.47962 1.04741 1.08318 1.71563 1.21777 1.00645 0.78532 0.99571 1.21507 0.96184 1.00510 0.98016 1.20511 0.90512 0.93206 0.90464 0.95637 1.22782 0.95052 0.95706 0.98627 0.86715 1.22821 0.95228 0.97524 0.99598 1.22230 0.94698 0.87770 0.98158 1.44761 1.44224 1.07244 1.38381 1.20010 1.10072 0.91188 1.20179 0.91942 1.26788 1.03527 1.01854 0.95439 1.71003 1.32134 1.20519 1.38103 0.83443 0.73721 0.74731 0.74762 1.25152 1.21619 1.18247 1.21566 0.84842 0.94473 0.98614 1.74174 0.99145 1.14468 1.28406 1.84751 1.10046 1.33031 1.68981 0.87328 0.88114 0.86656 0.78456 0.87892 0.86946 0.92209 0.88123 0.91858 0.89405 0.88468 0.89200 0.95846 0.94999 0.94340 0.92412 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 71.24 0.74 0.53 16 2 C 0.01 0.13 7.48 25.00 0.19 0.32 16 3 C -0.25 -4.46 11.10 22.50 0.25 -4.21 16 4 C 0.19 4.81 8.01 85.79 0.69 5.50 16 5 O -0.28 -8.22 9.74 -71.21 -0.69 -8.91 16 6 C 0.05 1.44 4.50 71.24 0.32 1.76 16 7 C 0.52 16.50 7.79 87.66 0.68 17.18 16 8 O -0.56 -21.38 15.93 16.01 0.25 -21.12 16 9 N -0.59 -18.30 2.93 -819.51 -2.40 -20.71 16 10 C 0.12 3.58 6.26 86.27 0.54 4.12 16 11 C -0.12 -3.85 5.14 30.00 0.15 -3.69 16 12 C 0.16 5.56 2.85 44.73 0.13 5.69 16 13 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 14 C -0.10 -2.91 3.86 -9.33 -0.04 -2.94 16 15 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 16 C -0.11 -3.22 6.28 32.15 0.20 -3.02 16 17 C 0.10 3.77 3.88 86.72 0.34 4.11 16 18 N -0.62 -27.25 3.05 -674.30 -2.05 -29.31 16 19 C -0.29 -15.27 9.33 84.03 0.78 -14.49 16 20 H 0.06 3.52 6.88 -2.91 -0.02 3.50 16 21 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 22 N -0.97 -61.55 13.70 21.65 0.30 -61.25 16 23 Si 1.10 53.65 24.54 68.60 1.68 55.33 16 24 H -0.32 -16.51 7.11 99.48 0.71 -15.80 16 25 H -0.29 -13.31 6.83 99.48 0.68 -12.63 16 26 H -0.26 -11.12 5.42 99.48 0.54 -10.58 16 27 C 0.13 3.96 5.45 86.46 0.47 4.43 16 28 N -0.43 -11.14 11.54 -172.59 -1.99 -13.13 16 29 O 0.09 1.89 11.19 71.27 0.80 2.69 16 30 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.10 2.60 7.90 -2.39 -0.02 2.58 16 35 H 0.11 2.61 7.78 -2.39 -0.02 2.59 16 36 H 0.06 2.28 7.48 -2.39 -0.02 2.27 16 37 H 0.10 2.48 6.00 -2.39 -0.01 2.47 16 38 H 0.06 2.21 7.04 -2.39 -0.02 2.19 16 39 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.10 2.31 7.97 -2.39 -0.02 2.29 16 41 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.02 1.00 3.99 -2.38 -0.01 0.99 16 43 H 0.03 1.35 6.34 -2.39 -0.02 1.33 16 44 H 0.25 15.64 8.73 -92.71 -0.81 14.83 16 45 H 0.06 2.04 6.82 -2.39 -0.02 2.02 16 46 H 0.09 2.74 6.99 -2.39 -0.02 2.73 16 Total: -1.00 -76.74 358.82 2.58 -74.16 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.77 Total: 11.34 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.92 Total: 10.91 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -6.15 Total: -124.40 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: 0.36 Total: -27.34 kcal Atomic # 14 Polarization: 53.65 SS G_CDS: 1.68 Total: 55.33 kcal Total: -76.74 2.58 -74.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036741477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.937 kcal (2) G-P(sol) polarization free energy of solvation -76.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds