Wall clock time and date at job start Tue Mar 31 2020 19:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35269 * 126.70625 * 2 1 4 4 C 1.41929 * 103.95905 * 180.02562 * 3 2 1 5 5 O 1.35715 * 126.87834 * 179.97438 * 4 3 2 6 6 C 1.42893 * 117.00103 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47500 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99833 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00566 * 179.97438 * 7 6 5 10 10 C 1.46599 * 119.75100 * 359.72865 * 9 7 6 11 11 C 1.54307 * 110.47689 * 132.17059 * 10 9 7 12 12 C 1.51975 * 107.21133 * 52.07931 * 11 10 9 13 13 H 1.09001 * 111.56700 * 56.70766 * 12 11 10 14 14 C 1.53701 * 115.00554 * 184.41263 * 12 11 10 15 15 C 1.55296 * 101.81248 * 153.45917 * 14 12 11 16 16 N 1.47260 * 106.87973 * 338.17209 * 15 14 12 17 17 C 1.36944 * 125.91779 * 174.44471 * 16 15 14 18 18 H 1.07994 * 119.99476 * 179.46193 * 17 16 15 19 19 C 1.38811 * 120.00096 * 359.46318 * 17 16 15 20 20 N 1.31624 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99873 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47336 * 59.99921 * 21 19 17 23 23 H 1.48504 * 109.46849 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47062 * 299.99529 * 21 19 17 25 25 C 1.45505 * 107.68362 * 353.98915 * 16 15 14 26 26 H 1.08996 * 109.56759 * 274.60841 * 25 16 15 27 27 C 1.47797 * 119.75557 * 179.97438 * 9 7 6 28 28 N 1.30613 * 106.24264 * 0.23510 * 4 3 2 29 29 O 1.20915 * 111.49682 * 359.57682 * 28 4 3 30 30 H 1.09006 * 109.46758 * 90.00972 * 1 2 3 31 31 H 1.08997 * 109.46959 * 209.99901 * 1 2 3 32 32 H 1.08997 * 109.47828 * 330.00629 * 1 2 3 33 33 H 1.08001 * 128.01782 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.46946 * 300.00198 * 6 5 4 35 35 H 1.09004 * 109.47453 * 59.99455 * 6 5 4 36 36 H 1.08998 * 109.22699 * 252.57135 * 10 9 7 37 37 H 1.09002 * 109.23007 * 11.93906 * 10 9 7 38 38 H 1.09004 * 110.05240 * 292.58579 * 11 10 9 39 39 H 1.09003 * 109.80929 * 171.43445 * 11 10 9 40 40 H 1.08998 * 110.96070 * 271.59314 * 14 12 11 41 41 H 1.09007 * 110.95936 * 35.29553 * 14 12 11 42 42 H 1.09008 * 109.91169 * 96.90561 * 15 14 12 43 43 H 1.09002 * 109.91728 * 218.00250 * 15 14 12 44 44 H 0.97001 * 119.99579 * 180.02562 * 20 19 17 45 45 H 1.08993 * 110.06675 * 350.47478 * 27 9 7 46 46 H 1.09001 * 110.06372 * 111.93369 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6244 0.5357 -0.0006 5 8 4.7953 1.2219 -0.0013 6 6 5.9988 0.4515 -0.0013 7 6 7.1879 1.3772 -0.0028 8 8 7.0211 2.5786 -0.0043 9 7 8.4366 0.8703 -0.0025 10 6 8.6320 -0.5826 0.0053 11 6 9.6635 -0.9943 -1.0659 12 6 10.9027 -0.1419 -0.8480 13 1 11.2920 -0.2522 0.1642 14 6 12.0142 -0.3325 -1.8923 15 6 12.7367 1.0412 -1.8419 16 7 11.7768 2.0090 -1.2845 17 6 12.0433 3.3151 -0.9708 18 1 11.2615 3.9452 -0.5733 19 6 13.3183 3.8290 -1.1638 20 7 14.2712 3.0608 -1.6478 21 14 13.6819 5.6104 -0.7352 22 1 13.4191 5.8357 0.7089 23 1 15.1060 5.9099 -1.0313 24 1 12.8101 6.5015 -1.5420 25 6 10.4982 1.3297 -1.1394 26 1 9.9505 1.3777 -2.0805 27 6 9.5989 1.7833 -0.0045 28 7 3.4765 -0.7620 -0.0061 29 8 2.3085 -1.0749 -0.0004 30 1 -0.3633 -0.0002 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3635 0.8900 0.5137 33 1 2.0310 2.1263 -0.0004 34 1 6.0280 -0.1766 0.8890 35 1 6.0275 -0.1777 -0.8909 36 1 8.9873 -0.8917 0.9883 37 1 7.6814 -1.0738 -0.2029 38 1 9.2599 -0.8141 -2.0623 39 1 9.9140 -2.0490 -0.9514 40 1 12.6882 -1.1384 -1.6018 41 1 11.5932 -0.5163 -2.8808 42 1 13.6091 0.9783 -1.1913 43 1 13.0426 1.3369 -2.8455 44 1 15.1622 3.4199 -1.7823 45 1 9.2692 2.8080 -0.1755 46 1 10.1296 1.7151 0.9451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042100688.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:59 Heat of formation + Delta-G solvation = 34.141582 kcal Electronic energy + Delta-G solvation = -29068.836144 eV Core-core repulsion = 24963.862900 eV Total energy + Delta-G solvation = -4104.973244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.17987 -40.45303 -39.11865 -37.95790 -35.49689 -34.17746 -32.94763 -32.83031 -31.34070 -30.28106 -28.74093 -28.34188 -27.66967 -24.73232 -23.74367 -23.70394 -22.34467 -21.65379 -20.15655 -19.80613 -19.07691 -18.22424 -18.13987 -17.14660 -16.98652 -16.44939 -16.24502 -15.76644 -14.90090 -14.75589 -14.43845 -14.36266 -14.23034 -13.97637 -13.74724 -13.70412 -13.50264 -13.18107 -12.91447 -12.80304 -12.74263 -12.30786 -12.02686 -11.87317 -11.53103 -11.42017 -11.32658 -10.97143 -10.83622 -10.74722 -10.18024 -10.00504 -9.89514 -9.84012 -9.77771 -9.66997 -9.49679 -9.47463 -8.61974 -8.53897 -6.87219 -5.71904 -3.06744 1.09475 1.98808 2.12609 2.55608 2.77195 3.22776 3.42764 3.46747 3.48531 3.89283 4.27783 4.43574 4.50376 4.60376 4.74327 4.78424 4.83588 4.87294 4.92010 4.92741 5.09224 5.18984 5.31964 5.34444 5.41695 5.56589 5.58936 5.64964 5.74197 5.85230 5.97402 6.02896 6.08559 6.13747 6.33420 6.41413 6.53347 6.60748 6.71431 6.75461 7.01805 7.39560 7.55224 7.61238 7.81806 7.94215 8.14688 8.24546 9.19848 9.81827 10.46909 11.39311 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.002414 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.982807 B =11596.274580 C =12730.105437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.232 4.232 4 C 0.215 3.785 5 O -0.256 6.256 6 C 0.048 3.952 7 C 0.514 3.486 8 O -0.518 6.518 9 N -0.601 5.601 10 C 0.104 3.896 11 C -0.119 4.119 12 C -0.113 4.113 13 H 0.079 0.921 14 C -0.139 4.139 15 C 0.178 3.822 16 N -0.591 5.591 17 C -0.231 4.231 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.156 3.844 26 H 0.025 0.975 27 C 0.119 3.881 28 N -0.412 5.412 29 O 0.097 5.903 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.179 0.821 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.253 0.747 45 H 0.094 0.906 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.676 -12.522 3.561 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.254 4.254 4 C 0.017 3.983 5 O -0.161 6.161 6 C -0.031 4.031 7 C 0.299 3.701 8 O -0.393 6.393 9 N -0.336 5.336 10 C -0.019 4.019 11 C -0.157 4.157 12 C -0.133 4.133 13 H 0.097 0.903 14 C -0.177 4.177 15 C 0.053 3.947 16 N -0.316 5.316 17 C -0.359 4.359 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.047 3.953 26 H 0.042 0.958 27 C -0.002 4.002 28 N -0.141 5.141 29 O 0.037 5.963 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.196 0.804 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.112 0.888 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.621 -12.409 3.545 26.044 hybrid contribution 0.201 1.469 0.143 1.490 sum -22.420 -10.940 3.688 25.218 Atomic orbital electron populations 1.20382 0.83480 1.04923 1.04417 1.24346 0.96481 0.85592 1.00957 1.21822 0.88308 1.01769 1.13515 1.22078 0.88530 0.88020 0.99673 1.86302 1.10015 1.30833 1.88903 1.22585 0.82369 0.93705 1.04425 1.19840 0.83686 0.88824 0.77725 1.90762 1.85058 1.15061 1.48454 1.48194 1.05341 1.07336 1.72754 1.21913 1.00048 0.79693 1.00255 1.21871 0.95437 0.99852 0.98588 1.22284 0.94432 0.96595 1.00019 0.90296 1.22746 0.97381 1.00100 0.97456 1.21406 0.91489 0.83434 0.98330 1.43969 1.04763 1.08407 1.74464 1.19011 0.95180 0.85149 1.36599 0.90343 1.24794 0.95972 0.98277 1.01169 1.69946 1.02097 1.34507 1.50308 0.86205 0.77029 0.84365 0.78245 1.21074 1.21614 1.21088 1.20987 0.88757 0.90808 0.94759 0.95751 1.21759 0.84408 0.94028 1.00042 1.74155 0.97913 1.14218 1.27772 1.84783 1.10304 1.31982 1.69187 0.89066 0.89533 0.88759 0.80359 0.88721 0.88617 0.91079 0.90587 0.91278 0.90641 0.92205 0.92609 0.92397 0.94609 0.93692 0.88815 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.21 10.45 36.01 0.38 0.17 16 2 C -0.01 -0.08 7.48 -35.36 -0.26 -0.34 16 3 C -0.23 -2.20 11.10 -39.23 -0.44 -2.64 16 4 C 0.21 2.72 8.01 -16.66 -0.13 2.58 16 5 O -0.26 -3.77 9.74 -38.76 -0.38 -4.15 16 6 C 0.05 0.62 4.47 36.00 0.16 0.78 16 7 C 0.51 8.43 7.75 -10.99 -0.09 8.34 16 8 O -0.52 -10.77 15.87 -14.36 -0.23 -11.00 16 9 N -0.60 -9.30 3.00 -172.51 -0.52 -9.82 16 10 C 0.10 1.20 6.25 -3.30 -0.02 1.18 16 11 C -0.12 -1.48 5.74 -26.57 -0.15 -1.63 16 12 C -0.11 -1.89 2.60 -89.51 -0.23 -2.12 16 13 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16 14 C -0.14 -2.49 6.54 -25.15 -0.16 -2.66 16 15 C 0.18 4.25 5.42 -2.41 -0.01 4.24 16 16 N -0.59 -14.88 3.31 -163.65 -0.54 -15.42 16 17 C -0.23 -6.42 9.87 -15.06 -0.15 -6.57 16 18 H 0.08 2.14 7.44 -52.49 -0.39 1.75 16 19 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 20 N -0.92 -26.97 10.36 55.49 0.57 -26.39 16 21 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.16 3.19 2.78 -67.84 -0.19 3.00 16 26 H 0.03 0.55 7.94 -51.93 -0.41 0.13 16 27 C 0.12 2.27 5.67 -3.97 -0.02 2.25 16 28 N -0.41 -5.00 11.54 30.38 0.35 -4.65 16 29 O 0.10 0.98 11.19 17.08 0.19 1.17 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 33 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.09 1.02 7.98 -51.93 -0.41 0.61 16 35 H 0.10 1.08 7.56 -51.93 -0.39 0.68 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.68 5.84 -51.93 -0.30 0.38 16 38 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 42 H 0.06 1.53 7.11 -51.92 -0.37 1.16 16 43 H 0.04 0.95 7.79 -51.93 -0.40 0.54 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.09 2.02 6.79 -51.93 -0.35 1.67 16 46 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -34.57 371.57 -8.21 -42.78 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.82 Total: -1.85 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -1.42 Total: 6.31 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.13 Total: -56.28 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.41 Total: -13.98 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.57 -8.21 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042100688.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.922 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds