Wall clock time and date at job start Tue Mar 31 2020 19:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35269 * 126.70625 * 2 1 4 4 C 1.41929 * 103.95905 * 180.02562 * 3 2 1 5 5 O 1.35715 * 126.87834 * 179.97438 * 4 3 2 6 6 C 1.42893 * 117.00103 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47500 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99833 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00566 * 179.97438 * 7 6 5 10 10 C 1.46599 * 119.75100 * 359.72865 * 9 7 6 11 11 C 1.54307 * 110.47689 * 132.17059 * 10 9 7 12 12 C 1.51975 * 107.21133 * 52.07931 * 11 10 9 13 13 H 1.09001 * 111.56700 * 56.70766 * 12 11 10 14 14 C 1.53701 * 115.00554 * 184.41263 * 12 11 10 15 15 C 1.55296 * 101.81248 * 153.45917 * 14 12 11 16 16 N 1.47260 * 106.87973 * 338.17209 * 15 14 12 17 17 C 1.36944 * 125.91779 * 174.44471 * 16 15 14 18 18 H 1.07994 * 119.99476 * 179.46193 * 17 16 15 19 19 C 1.38811 * 120.00096 * 359.46318 * 17 16 15 20 20 N 1.31624 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99873 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47336 * 59.99921 * 21 19 17 23 23 H 1.48504 * 109.46849 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47062 * 299.99529 * 21 19 17 25 25 C 1.45505 * 107.68362 * 353.98915 * 16 15 14 26 26 H 1.08996 * 109.56759 * 274.60841 * 25 16 15 27 27 C 1.47797 * 119.75557 * 179.97438 * 9 7 6 28 28 N 1.30613 * 106.24264 * 0.23510 * 4 3 2 29 29 O 1.20915 * 111.49682 * 359.57682 * 28 4 3 30 30 H 1.09006 * 109.46758 * 90.00972 * 1 2 3 31 31 H 1.08997 * 109.46959 * 209.99901 * 1 2 3 32 32 H 1.08997 * 109.47828 * 330.00629 * 1 2 3 33 33 H 1.08001 * 128.01782 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.46946 * 300.00198 * 6 5 4 35 35 H 1.09004 * 109.47453 * 59.99455 * 6 5 4 36 36 H 1.08998 * 109.22699 * 252.57135 * 10 9 7 37 37 H 1.09002 * 109.23007 * 11.93906 * 10 9 7 38 38 H 1.09004 * 110.05240 * 292.58579 * 11 10 9 39 39 H 1.09003 * 109.80929 * 171.43445 * 11 10 9 40 40 H 1.08998 * 110.96070 * 271.59314 * 14 12 11 41 41 H 1.09007 * 110.95936 * 35.29553 * 14 12 11 42 42 H 1.09008 * 109.91169 * 96.90561 * 15 14 12 43 43 H 1.09002 * 109.91728 * 218.00250 * 15 14 12 44 44 H 0.97001 * 119.99579 * 180.02562 * 20 19 17 45 45 H 1.08993 * 110.06675 * 350.47478 * 27 9 7 46 46 H 1.09001 * 110.06372 * 111.93369 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6244 0.5357 -0.0006 5 8 4.7953 1.2219 -0.0013 6 6 5.9988 0.4515 -0.0013 7 6 7.1879 1.3772 -0.0028 8 8 7.0211 2.5786 -0.0043 9 7 8.4366 0.8703 -0.0025 10 6 8.6320 -0.5826 0.0053 11 6 9.6635 -0.9943 -1.0659 12 6 10.9027 -0.1419 -0.8480 13 1 11.2920 -0.2522 0.1642 14 6 12.0142 -0.3325 -1.8923 15 6 12.7367 1.0412 -1.8419 16 7 11.7768 2.0090 -1.2845 17 6 12.0433 3.3151 -0.9708 18 1 11.2615 3.9452 -0.5733 19 6 13.3183 3.8290 -1.1638 20 7 14.2712 3.0608 -1.6478 21 14 13.6819 5.6104 -0.7352 22 1 13.4191 5.8357 0.7089 23 1 15.1060 5.9099 -1.0313 24 1 12.8101 6.5015 -1.5420 25 6 10.4982 1.3297 -1.1394 26 1 9.9505 1.3777 -2.0805 27 6 9.5989 1.7833 -0.0045 28 7 3.4765 -0.7620 -0.0061 29 8 2.3085 -1.0749 -0.0004 30 1 -0.3633 -0.0002 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3635 0.8900 0.5137 33 1 2.0310 2.1263 -0.0004 34 1 6.0280 -0.1766 0.8890 35 1 6.0275 -0.1777 -0.8909 36 1 8.9873 -0.8917 0.9883 37 1 7.6814 -1.0738 -0.2029 38 1 9.2599 -0.8141 -2.0623 39 1 9.9140 -2.0490 -0.9514 40 1 12.6882 -1.1384 -1.6018 41 1 11.5932 -0.5163 -2.8808 42 1 13.6091 0.9783 -1.1913 43 1 13.0426 1.3369 -2.8455 44 1 15.1622 3.4199 -1.7823 45 1 9.2692 2.8080 -0.1755 46 1 10.1296 1.7151 0.9451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042100688.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:58 Heat of formation + Delta-G solvation = 10.259480 kcal Electronic energy + Delta-G solvation = -29069.871750 eV Core-core repulsion = 24963.862900 eV Total energy + Delta-G solvation = -4106.008850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.94598 -41.74353 -40.34219 -39.29761 -36.99891 -34.79167 -34.72552 -33.59208 -32.94377 -31.72618 -30.33210 -29.29416 -28.49448 -26.57994 -25.24862 -24.48557 -23.64932 -22.54299 -21.82362 -21.33527 -20.31438 -19.11132 -18.93680 -18.66961 -18.05138 -17.72389 -17.42421 -17.04365 -16.74528 -16.13263 -15.76597 -15.71943 -15.40715 -15.05865 -14.88169 -14.64831 -14.40324 -14.12198 -14.02599 -13.89166 -13.83197 -13.59142 -13.23304 -13.18770 -13.10549 -12.88560 -12.74326 -12.56538 -12.17923 -12.12859 -12.04905 -11.81470 -11.57845 -11.42032 -11.06925 -11.03743 -10.74060 -10.51779 -10.27586 -9.85479 -8.94504 -7.88660 -5.24717 0.44243 1.10236 1.18205 1.30179 1.41423 1.44069 1.50464 2.03450 2.29101 2.46782 3.07484 3.20540 3.28353 3.46690 3.72364 3.79655 3.84899 3.89794 3.93002 3.96245 3.98455 4.22213 4.24705 4.25955 4.38778 4.49331 4.58370 4.66467 4.76770 4.77629 4.80291 4.84717 4.87707 4.91853 5.07926 5.12164 5.18103 5.28074 5.31402 5.45051 5.55540 5.64800 5.77349 5.80891 6.17080 6.19071 6.87912 7.06484 7.20906 7.74571 8.39253 9.20782 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.002414 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.982807 B =11596.274580 C =12730.105437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.012 3.988 3 C -0.254 4.254 4 C 0.189 3.811 5 O -0.284 6.284 6 C 0.058 3.942 7 C 0.509 3.491 8 O -0.574 6.574 9 N -0.596 5.596 10 C 0.097 3.903 11 C -0.110 4.110 12 C -0.096 4.096 13 H 0.079 0.921 14 C -0.123 4.123 15 C 0.180 3.820 16 N -0.612 5.612 17 C -0.241 4.241 18 H 0.074 0.926 19 C -0.061 4.061 20 N -0.947 5.947 21 Si 0.972 3.028 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.146 3.854 26 H 0.009 0.991 27 C 0.131 3.869 28 N -0.427 5.427 29 O 0.094 5.906 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.192 0.808 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.025 0.975 43 H -0.003 1.003 44 H 0.248 0.752 45 H 0.057 0.943 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.536 -15.289 4.282 30.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.051 4.051 3 C -0.276 4.276 4 C -0.008 4.008 5 O -0.190 6.190 6 C -0.020 4.020 7 C 0.297 3.703 8 O -0.453 6.453 9 N -0.330 5.330 10 C -0.024 4.024 11 C -0.148 4.148 12 C -0.116 4.116 13 H 0.097 0.903 14 C -0.161 4.161 15 C 0.055 3.945 16 N -0.337 5.337 17 C -0.370 4.370 18 H 0.092 0.908 19 C -0.255 4.255 20 N -0.595 5.595 21 Si 0.801 3.199 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.209 1.209 25 C 0.039 3.961 26 H 0.026 0.974 27 C 0.008 3.992 28 N -0.155 5.155 29 O 0.034 5.966 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.210 0.790 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.015 0.985 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.515 -15.243 4.273 30.027 hybrid contribution 0.976 2.321 -0.108 2.520 sum -24.540 -12.922 4.165 28.045 Atomic orbital electron populations 1.20681 0.79865 1.06606 1.05975 1.25111 0.98025 0.84038 0.97968 1.22171 0.87482 1.03166 1.14741 1.22437 0.88549 0.88718 1.01084 1.86243 1.11043 1.32235 1.89504 1.22559 0.80428 0.92435 1.06554 1.20546 0.84736 0.88668 0.76345 1.90733 1.85906 1.17692 1.51010 1.48230 1.04039 1.08767 1.71986 1.22311 1.01942 0.76845 1.01312 1.21877 0.92942 1.01154 0.98849 1.22220 0.95782 0.94112 0.99477 0.90273 1.22614 0.97720 0.96806 0.98920 1.21221 0.91365 0.86688 0.95186 1.44242 1.06878 1.08148 1.74426 1.19277 0.95140 0.86778 1.35839 0.90843 1.25572 0.96003 1.02081 1.01814 1.70156 1.02028 1.35823 1.51508 0.85248 0.76562 0.79941 0.78194 1.20252 1.21535 1.20909 1.21142 0.87121 0.93472 0.94407 0.97355 1.21320 0.85409 0.93262 0.99208 1.74124 0.99039 1.13973 1.28345 1.84739 1.10071 1.32814 1.68976 0.87323 0.87915 0.86966 0.79031 0.86112 0.86484 0.88837 0.86912 0.91405 0.86483 0.89493 0.91252 0.95659 0.98489 0.94299 0.92484 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.15 10.45 71.24 0.74 0.59 16 2 C 0.01 0.15 7.48 25.00 0.19 0.34 16 3 C -0.25 -4.47 11.10 22.50 0.25 -4.22 16 4 C 0.19 4.59 8.01 85.79 0.69 5.27 16 5 O -0.28 -8.28 9.74 -71.32 -0.69 -8.97 16 6 C 0.06 1.40 4.47 71.23 0.32 1.71 16 7 C 0.51 16.57 7.75 87.66 0.68 17.25 16 8 O -0.57 -24.88 15.87 15.99 0.25 -24.62 16 9 N -0.60 -17.80 3.00 -818.07 -2.46 -20.26 16 10 C 0.10 1.84 6.25 86.80 0.54 2.39 16 11 C -0.11 -2.27 5.74 30.70 0.18 -2.09 16 12 C -0.10 -3.01 2.60 -10.08 -0.03 -3.04 16 13 H 0.08 2.52 8.13 -2.39 -0.02 2.50 16 14 C -0.12 -4.24 6.54 31.62 0.21 -4.03 16 15 C 0.18 8.94 5.42 87.02 0.47 9.41 16 16 N -0.61 -32.05 3.31 -671.66 -2.22 -34.27 16 17 C -0.24 -14.01 9.87 84.03 0.83 -13.18 16 18 H 0.07 4.22 7.44 -2.91 -0.02 4.20 16 19 C -0.06 -3.60 5.49 84.86 0.47 -3.14 16 20 N -0.95 -57.83 10.36 21.65 0.22 -57.61 16 21 Si 0.97 47.70 29.55 68.60 2.03 49.72 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 24 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 25 C 0.15 6.09 2.78 45.58 0.13 6.22 16 26 H 0.01 0.40 7.94 -2.39 -0.02 0.38 16 27 C 0.13 5.12 5.67 85.72 0.49 5.61 16 28 N -0.43 -9.58 11.54 -172.61 -1.99 -11.57 16 29 O 0.09 1.68 11.19 71.28 0.80 2.48 16 30 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 31 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.12 2.25 7.98 -2.39 -0.02 2.23 16 35 H 0.12 2.29 7.56 -2.38 -0.02 2.27 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.11 1.42 5.84 -2.39 -0.01 1.41 16 38 H 0.07 1.48 7.99 -2.38 -0.02 1.46 16 39 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.07 2.22 8.12 -2.38 -0.02 2.21 16 42 H 0.03 1.39 7.11 -2.38 -0.02 1.38 16 43 H 0.00 -0.17 7.79 -2.39 -0.02 -0.19 16 44 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 45 H 0.06 2.63 6.79 -2.39 -0.02 2.61 16 46 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -82.66 371.57 3.07 -79.59 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 0.99 Total: 6.42 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 6.14 Total: 19.09 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -6.45 Total: -123.72 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: 0.36 Total: -31.12 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.72 kcal Total: -82.66 3.07 -79.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042100688.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.853 kcal (2) G-P(sol) polarization free energy of solvation -82.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds