Wall clock time and date at job start Tue Mar 31 2020 19:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35272 * 126.70316 * 2 1 4 4 C 1.41936 * 103.95808 * 180.02562 * 3 2 1 5 5 O 1.35700 * 126.88119 * 179.97438 * 4 3 2 6 6 C 1.42906 * 117.00247 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47045 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00413 * 0.27121 * 7 6 5 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 6 5 10 10 C 1.47147 * 121.21689 * 359.97438 * 9 7 6 11 11 C 1.52843 * 107.98067 * 122.71514 * 10 9 7 12 12 C 1.53087 * 110.57818 * 57.34067 * 11 10 9 13 13 H 1.08997 * 112.49463 * 71.37600 * 12 11 10 14 14 C 1.56034 * 106.38927 * 195.44308 * 12 11 10 15 15 C 1.56539 * 101.68645 * 78.79731 * 14 12 11 16 16 N 1.47434 * 107.35739 * 22.63599 * 15 14 12 17 17 C 1.36935 * 126.05992 * 181.70993 * 16 15 14 18 18 H 1.08004 * 120.00255 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00192 * 359.97438 * 17 16 15 20 20 N 1.31616 * 119.99874 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00049 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47431 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47296 * 120.00223 * 21 19 17 24 24 H 1.48500 * 109.47545 * 239.99953 * 21 19 17 25 25 C 1.46471 * 107.87866 * 1.70169 * 16 15 14 26 26 H 1.08994 * 108.42181 * 89.90322 * 25 16 15 27 27 C 1.46761 * 121.21276 * 179.71645 * 9 7 6 28 28 N 1.30622 * 106.23738 * 0.23854 * 4 3 2 29 29 O 1.20911 * 111.50222 * 359.57514 * 28 4 3 30 30 H 1.08999 * 109.47331 * 89.99936 * 1 2 3 31 31 H 1.09006 * 109.47076 * 210.00417 * 1 2 3 32 32 H 1.09005 * 109.47267 * 329.99817 * 1 2 3 33 33 H 1.07998 * 128.02701 * 0.02562 * 3 2 1 34 34 H 1.09005 * 109.47002 * 59.99627 * 6 5 4 35 35 H 1.09002 * 109.46834 * 299.99994 * 6 5 4 36 36 H 1.09001 * 109.75891 * 242.33119 * 10 9 7 37 37 H 1.08999 * 109.76508 * 3.09328 * 10 9 7 38 38 H 1.08993 * 109.25151 * 177.62295 * 11 10 9 39 39 H 1.09000 * 109.25382 * 297.09517 * 11 10 9 40 40 H 1.09001 * 110.77938 * 196.65797 * 14 12 11 41 41 H 1.09002 * 110.77481 * 320.09227 * 14 12 11 42 42 H 1.08996 * 109.73096 * 263.22166 * 15 14 12 43 43 H 1.08997 * 110.01721 * 142.19849 * 15 14 12 44 44 H 0.96996 * 120.00336 * 179.97438 * 20 19 17 45 45 H 1.08992 * 109.23079 * 352.85504 * 27 9 7 46 46 H 1.09008 * 109.22372 * 112.21745 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6245 0.5358 -0.0006 5 8 4.7952 1.2219 -0.0013 6 6 5.9988 0.4515 -0.0013 7 6 7.1878 1.3773 -0.0028 8 8 7.0211 2.5785 0.0012 9 7 8.4367 0.8703 -0.0035 10 6 8.6699 -0.5826 -0.0024 11 6 9.5192 -0.9251 -1.2260 12 6 10.8319 -0.1376 -1.2075 13 1 11.5191 -0.4906 -0.4386 14 6 11.4271 -0.2400 -2.6461 15 6 10.5731 0.8202 -3.4189 16 7 10.0439 1.7694 -2.4226 17 6 9.2194 2.8320 -2.6802 18 1 8.8886 3.4672 -1.8718 19 6 8.8087 3.0926 -3.9803 20 7 9.2113 2.3182 -4.9654 21 14 7.6846 4.5425 -4.3317 22 1 7.3790 5.2509 -3.0628 23 1 8.3590 5.4760 -5.2692 24 1 6.4224 4.0537 -4.9425 25 6 10.5562 1.3743 -1.1085 26 1 11.5032 1.8868 -0.9398 27 6 9.6135 1.7471 -0.0112 28 7 3.4765 -0.7620 -0.0061 29 8 2.3085 -1.0749 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 2.0311 2.1264 0.0004 34 1 6.0275 -0.1777 -0.8910 35 1 6.0280 -0.1767 0.8890 36 1 9.1995 -0.8701 0.9059 37 1 7.7169 -1.1089 -0.0563 38 1 9.7403 -1.9924 -1.2227 39 1 8.9639 -0.6759 -2.1302 40 1 12.4819 0.0348 -2.6487 41 1 11.2864 -1.2417 -3.0524 42 1 9.7498 0.3250 -3.9337 43 1 11.1972 1.3484 -4.1397 44 1 8.9240 2.5001 -5.8738 45 1 9.2910 2.7797 -0.1436 46 1 10.1364 1.6543 0.9408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042100689.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:03 Heat of formation + Delta-G solvation = 36.318875 kcal Electronic energy + Delta-G solvation = -30252.996517 eV Core-core repulsion = 26148.117688 eV Total energy + Delta-G solvation = -4104.878829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.97186 -40.19224 -38.94130 -37.65218 -35.00256 -33.98642 -32.86057 -32.61576 -31.36212 -29.84638 -28.41894 -28.24011 -27.59922 -24.65643 -23.74008 -23.49662 -22.58596 -21.49037 -20.06098 -19.73975 -18.36756 -17.97607 -17.91840 -16.93072 -16.63656 -16.44388 -16.02142 -15.46869 -14.94823 -14.45272 -14.35471 -14.05944 -14.02397 -13.94180 -13.63436 -13.54681 -13.26632 -12.95958 -12.72706 -12.68662 -12.58273 -12.02963 -11.68850 -11.65440 -11.34495 -11.27722 -11.16582 -10.92226 -10.76622 -10.69649 -10.09308 -9.86730 -9.83454 -9.65140 -9.63992 -9.48647 -9.32816 -9.23963 -8.52673 -8.20196 -6.76062 -5.63301 -2.95354 1.29226 2.20653 2.40413 2.94772 2.99237 3.48489 3.54911 3.55460 3.62573 4.11638 4.56665 4.60573 4.65020 4.81020 4.98770 5.01472 5.04710 5.08116 5.09856 5.17597 5.30875 5.35679 5.48151 5.50145 5.51124 5.66462 5.70206 5.74086 5.76445 5.95609 6.00694 6.09772 6.24285 6.28823 6.40844 6.44432 6.58769 6.73389 6.88439 6.93539 7.08760 7.62853 7.65243 7.75567 7.92836 8.15748 8.31111 8.54625 9.30536 9.91102 10.55089 11.48980 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.003886 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.412131 B = 7203.961193 C = 8542.931091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.013 4.013 3 C -0.232 4.232 4 C 0.217 3.783 5 O -0.254 6.254 6 C 0.050 3.950 7 C 0.525 3.475 8 O -0.512 6.512 9 N -0.589 5.589 10 C 0.107 3.893 11 C -0.124 4.124 12 C -0.100 4.100 13 H 0.075 0.925 14 C -0.145 4.145 15 C 0.179 3.821 16 N -0.590 5.590 17 C -0.214 4.214 18 H 0.083 0.917 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.151 3.849 26 H 0.029 0.971 27 C 0.118 3.882 28 N -0.413 5.413 29 O 0.096 5.904 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.178 0.822 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.044 0.956 43 H 0.041 0.959 44 H 0.249 0.751 45 H 0.099 0.901 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 -10.207 12.259 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.254 4.254 4 C 0.019 3.981 5 O -0.159 6.159 6 C -0.028 4.028 7 C 0.311 3.689 8 O -0.386 6.386 9 N -0.324 5.324 10 C -0.016 4.016 11 C -0.162 4.162 12 C -0.120 4.120 13 H 0.093 0.907 14 C -0.184 4.184 15 C 0.054 3.946 16 N -0.316 5.316 17 C -0.342 4.342 18 H 0.101 0.899 19 C -0.203 4.203 20 N -0.574 5.574 21 Si 0.735 3.265 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.220 1.220 25 C 0.042 3.958 26 H 0.047 0.953 27 C -0.005 4.005 28 N -0.142 5.142 29 O 0.037 5.963 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.196 0.804 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.117 0.883 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.354 -10.116 12.064 18.314 hybrid contribution -0.656 1.228 -0.493 1.477 sum -10.010 -8.889 11.571 17.695 Atomic orbital electron populations 1.20360 0.83593 1.04751 1.04358 1.24314 0.96420 0.85680 1.01296 1.21821 0.88402 1.01726 1.13428 1.22096 0.88660 0.87956 0.99343 1.86309 1.10026 1.30833 1.88697 1.22537 0.82450 0.93802 1.04029 1.19543 0.83289 0.88653 0.77421 1.90737 1.84802 1.14996 1.48071 1.47662 1.04892 1.06931 1.72943 1.21728 1.00216 0.80576 0.99047 1.21847 0.96679 0.98819 0.98863 1.22337 0.95887 0.96129 0.97612 0.90669 1.23500 0.99325 0.99982 0.95557 1.21569 0.94761 0.88190 0.90038 1.44328 1.56077 1.31083 1.00119 1.19106 1.19847 1.02349 0.92914 0.89893 1.24694 1.00692 0.99174 0.95724 1.69960 1.48888 1.39439 0.99092 0.86126 0.80229 0.82233 0.77957 1.20108 1.21977 1.22022 1.20411 0.94787 0.92543 0.88011 0.95329 1.21087 0.85325 0.96528 0.97545 1.74150 0.97777 1.14290 1.27935 1.84773 1.10348 1.31954 1.69270 0.89136 0.89641 0.88861 0.80427 0.88708 0.89227 0.91295 0.90754 0.91815 0.90071 0.92668 0.92151 0.93780 0.94063 0.94101 0.88297 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.45 36.01 0.38 0.02 16 2 C -0.01 -0.13 7.48 -35.36 -0.26 -0.40 16 3 C -0.23 -2.85 11.11 -39.22 -0.44 -3.28 16 4 C 0.22 3.42 8.01 -16.65 -0.13 3.29 16 5 O -0.25 -4.66 9.74 -38.71 -0.38 -5.04 16 6 C 0.05 0.84 4.51 36.00 0.16 1.00 16 7 C 0.53 10.39 7.79 -10.98 -0.09 10.30 16 8 O -0.51 -12.32 15.96 -14.35 -0.23 -12.55 16 9 N -0.59 -10.40 2.98 -175.17 -0.52 -10.93 16 10 C 0.11 1.46 6.36 -3.77 -0.02 1.44 16 11 C -0.12 -1.87 5.04 -26.77 -0.13 -2.01 16 12 C -0.10 -1.61 3.65 -88.43 -0.32 -1.94 16 13 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.15 -2.59 6.48 -23.20 -0.15 -2.74 16 15 C 0.18 4.26 4.67 -1.62 -0.01 4.26 16 16 N -0.59 -14.63 3.19 -164.16 -0.52 -15.15 16 17 C -0.21 -6.05 9.64 -15.06 -0.15 -6.20 16 18 H 0.08 2.42 6.38 -52.48 -0.33 2.08 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 20 N -0.93 -27.79 10.38 55.49 0.58 -27.21 16 21 Si 0.90 23.93 29.55 -169.99 -5.02 18.91 16 22 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 24 H -0.29 -7.86 7.11 56.52 0.40 -7.45 16 25 C 0.15 2.97 2.96 -69.20 -0.21 2.77 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 C 0.12 2.20 5.54 -5.68 -0.03 2.17 16 28 N -0.41 -6.16 11.54 30.38 0.35 -5.81 16 29 O 0.10 1.20 11.19 17.07 0.19 1.39 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.09 1.54 7.79 -51.93 -0.40 1.14 16 35 H 0.09 1.22 7.91 -51.93 -0.41 0.81 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.89 6.02 -51.93 -0.31 0.57 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.55 6.84 -51.93 -0.36 1.19 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 42 H 0.04 1.17 7.03 -51.93 -0.37 0.81 16 43 H 0.04 1.11 7.56 -51.93 -0.39 0.71 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.10 2.19 5.35 -51.93 -0.28 1.91 16 46 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -35.75 367.50 -8.15 -43.90 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.63 Total: -1.41 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -1.50 Total: 8.37 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.12 Total: -59.10 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.41 Total: -16.19 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.02 Total: 18.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.75 -8.15 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042100689.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.217 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds