Wall clock time and date at job start Tue Mar 31 2020 19:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35272 * 126.70316 * 2 1 4 4 C 1.41936 * 103.95808 * 180.02562 * 3 2 1 5 5 O 1.35700 * 126.88119 * 179.97438 * 4 3 2 6 6 C 1.42906 * 117.00247 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47045 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00413 * 0.27121 * 7 6 5 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 6 5 10 10 C 1.47147 * 121.21689 * 359.97438 * 9 7 6 11 11 C 1.52843 * 107.98067 * 122.71514 * 10 9 7 12 12 C 1.53087 * 110.57818 * 57.34067 * 11 10 9 13 13 H 1.08997 * 112.49463 * 71.37600 * 12 11 10 14 14 C 1.56034 * 106.38927 * 195.44308 * 12 11 10 15 15 C 1.56539 * 101.68645 * 78.79731 * 14 12 11 16 16 N 1.47434 * 107.35739 * 22.63599 * 15 14 12 17 17 C 1.36935 * 126.05992 * 181.70993 * 16 15 14 18 18 H 1.08004 * 120.00255 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00192 * 359.97438 * 17 16 15 20 20 N 1.31616 * 119.99874 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00049 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47431 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47296 * 120.00223 * 21 19 17 24 24 H 1.48500 * 109.47545 * 239.99953 * 21 19 17 25 25 C 1.46471 * 107.87866 * 1.70169 * 16 15 14 26 26 H 1.08994 * 108.42181 * 89.90322 * 25 16 15 27 27 C 1.46761 * 121.21276 * 179.71645 * 9 7 6 28 28 N 1.30622 * 106.23738 * 0.23854 * 4 3 2 29 29 O 1.20911 * 111.50222 * 359.57514 * 28 4 3 30 30 H 1.08999 * 109.47331 * 89.99936 * 1 2 3 31 31 H 1.09006 * 109.47076 * 210.00417 * 1 2 3 32 32 H 1.09005 * 109.47267 * 329.99817 * 1 2 3 33 33 H 1.07998 * 128.02701 * 0.02562 * 3 2 1 34 34 H 1.09005 * 109.47002 * 59.99627 * 6 5 4 35 35 H 1.09002 * 109.46834 * 299.99994 * 6 5 4 36 36 H 1.09001 * 109.75891 * 242.33119 * 10 9 7 37 37 H 1.08999 * 109.76508 * 3.09328 * 10 9 7 38 38 H 1.08993 * 109.25151 * 177.62295 * 11 10 9 39 39 H 1.09000 * 109.25382 * 297.09517 * 11 10 9 40 40 H 1.09001 * 110.77938 * 196.65797 * 14 12 11 41 41 H 1.09002 * 110.77481 * 320.09227 * 14 12 11 42 42 H 1.08996 * 109.73096 * 263.22166 * 15 14 12 43 43 H 1.08997 * 110.01721 * 142.19849 * 15 14 12 44 44 H 0.96996 * 120.00336 * 179.97438 * 20 19 17 45 45 H 1.08992 * 109.23079 * 352.85504 * 27 9 7 46 46 H 1.09008 * 109.22372 * 112.21745 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6245 0.5358 -0.0006 5 8 4.7952 1.2219 -0.0013 6 6 5.9988 0.4515 -0.0013 7 6 7.1878 1.3773 -0.0028 8 8 7.0211 2.5785 0.0012 9 7 8.4367 0.8703 -0.0035 10 6 8.6699 -0.5826 -0.0024 11 6 9.5192 -0.9251 -1.2260 12 6 10.8319 -0.1376 -1.2075 13 1 11.5191 -0.4906 -0.4386 14 6 11.4271 -0.2400 -2.6461 15 6 10.5731 0.8202 -3.4189 16 7 10.0439 1.7694 -2.4226 17 6 9.2194 2.8320 -2.6802 18 1 8.8886 3.4672 -1.8718 19 6 8.8087 3.0926 -3.9803 20 7 9.2113 2.3182 -4.9654 21 14 7.6846 4.5425 -4.3317 22 1 7.3790 5.2509 -3.0628 23 1 8.3590 5.4760 -5.2692 24 1 6.4224 4.0537 -4.9425 25 6 10.5562 1.3743 -1.1085 26 1 11.5032 1.8868 -0.9398 27 6 9.6135 1.7471 -0.0112 28 7 3.4765 -0.7620 -0.0061 29 8 2.3085 -1.0749 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 2.0311 2.1264 0.0004 34 1 6.0275 -0.1777 -0.8910 35 1 6.0280 -0.1767 0.8890 36 1 9.1995 -0.8701 0.9059 37 1 7.7169 -1.1089 -0.0563 38 1 9.7403 -1.9924 -1.2227 39 1 8.9639 -0.6759 -2.1302 40 1 12.4819 0.0348 -2.6487 41 1 11.2864 -1.2417 -3.0524 42 1 9.7498 0.3250 -3.9337 43 1 11.1972 1.3484 -4.1397 44 1 8.9240 2.5001 -5.8738 45 1 9.2910 2.7797 -0.1436 46 1 10.1364 1.6543 0.9408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042100689.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:02 Heat of formation + Delta-G solvation = 10.752790 kcal Electronic energy + Delta-G solvation = -30254.105146 eV Core-core repulsion = 26148.117688 eV Total energy + Delta-G solvation = -4105.987458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.98928 -41.64113 -40.31685 -39.15863 -36.61279 -34.82297 -34.70995 -33.62822 -33.01100 -31.44638 -30.08035 -29.41259 -28.54403 -26.56701 -25.30962 -24.53300 -23.95480 -22.60820 -21.83639 -21.17170 -19.81670 -19.08929 -18.97437 -18.49157 -18.04121 -17.84114 -17.33569 -17.06157 -16.67819 -16.10737 -15.80225 -15.65275 -15.36551 -15.00648 -14.88793 -14.47671 -14.33514 -14.18637 -14.00822 -13.93244 -13.78783 -13.26258 -13.24019 -13.14805 -13.02541 -12.90202 -12.68344 -12.58239 -12.35082 -12.15714 -12.06956 -11.70059 -11.44786 -11.29865 -11.19444 -10.83509 -10.71702 -10.55254 -10.30588 -9.62528 -8.83725 -7.88078 -5.17484 0.41162 1.13114 1.18865 1.30450 1.32959 1.44970 1.48534 2.11954 2.34430 2.43782 3.06452 3.28904 3.31355 3.57618 3.73819 3.81479 3.85443 3.88828 3.89124 3.94494 4.05706 4.25467 4.35460 4.44188 4.44859 4.55652 4.62406 4.72209 4.74484 4.77370 4.81508 4.86341 4.89106 4.98365 5.11052 5.13952 5.24820 5.29937 5.50664 5.56459 5.62783 5.70603 5.80322 5.82377 6.20370 6.35734 7.06722 7.12400 7.18958 7.80251 8.42769 9.22536 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.003886 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.412131 B = 7203.961193 C = 8542.931091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.012 3.988 3 C -0.256 4.256 4 C 0.185 3.815 5 O -0.286 6.286 6 C 0.061 3.939 7 C 0.513 3.487 8 O -0.571 6.571 9 N -0.588 5.588 10 C 0.103 3.897 11 C -0.121 4.121 12 C -0.083 4.083 13 H 0.127 0.873 14 C -0.129 4.129 15 C 0.184 3.816 16 N -0.607 5.607 17 C -0.202 4.202 18 H 0.067 0.933 19 C -0.063 4.063 20 N -0.948 5.948 21 Si 0.950 3.050 22 H -0.283 1.283 23 H -0.285 1.285 24 H -0.298 1.298 25 C 0.139 3.861 26 H 0.033 0.967 27 C 0.119 3.881 28 N -0.428 5.428 29 O 0.097 5.903 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.192 0.808 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.005 0.995 43 H -0.002 1.002 44 H 0.242 0.758 45 H 0.054 0.946 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.470 -13.078 14.697 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 C -0.278 4.278 4 C -0.011 4.011 5 O -0.192 6.192 6 C -0.017 4.017 7 C 0.300 3.700 8 O -0.450 6.450 9 N -0.321 5.321 10 C -0.018 4.018 11 C -0.159 4.159 12 C -0.102 4.102 13 H 0.145 0.855 14 C -0.167 4.167 15 C 0.059 3.941 16 N -0.333 5.333 17 C -0.332 4.332 18 H 0.085 0.915 19 C -0.256 4.256 20 N -0.599 5.599 21 Si 0.781 3.219 22 H -0.208 1.208 23 H -0.211 1.211 24 H -0.225 1.225 25 C 0.032 3.968 26 H 0.050 0.950 27 C -0.004 4.004 28 N -0.156 5.156 29 O 0.036 5.964 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.209 0.791 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.023 0.977 43 H 0.016 0.984 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.731 -13.043 14.535 21.819 hybrid contribution -0.573 2.087 -1.197 2.474 sum -10.304 -10.956 13.337 20.102 Atomic orbital electron populations 1.20689 0.79536 1.06772 1.05937 1.25155 0.98116 0.83918 0.97933 1.22184 0.87435 1.03253 1.14878 1.22525 0.88699 0.88798 1.01110 1.86245 1.11172 1.32372 1.89372 1.22474 0.81070 0.92812 1.05350 1.20212 0.84770 0.88435 0.76579 1.90698 1.85802 1.17496 1.50958 1.47847 1.03925 1.08854 1.71446 1.22115 1.01668 0.77754 1.00266 1.21830 0.95657 1.01133 0.97325 1.22401 0.97239 0.92980 0.97563 0.85547 1.23360 0.98779 0.98746 0.95807 1.21337 0.93627 0.88948 0.90140 1.44507 1.55405 1.30408 1.02935 1.19135 1.19036 1.02801 0.92186 0.91472 1.25268 1.02738 1.01471 0.96088 1.70138 1.50275 1.40642 0.98828 0.85389 0.78799 0.80373 0.77310 1.20824 1.21146 1.22524 1.20768 0.94616 0.95663 0.85718 0.94965 1.20981 0.85705 0.94533 0.99155 1.74120 0.99085 1.13992 1.28411 1.84726 1.09998 1.32789 1.68867 0.87492 0.87610 0.86807 0.79085 0.88853 0.85954 0.86763 0.89005 0.87563 0.94976 0.91179 0.89771 0.97690 0.98383 0.94850 0.92794 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 71.24 0.74 0.29 16 2 C 0.01 0.22 7.48 25.00 0.19 0.41 16 3 C -0.26 -6.17 11.11 22.50 0.25 -5.92 16 4 C 0.19 5.91 8.01 85.79 0.69 6.60 16 5 O -0.29 -10.88 9.74 -71.16 -0.69 -11.57 16 6 C 0.06 2.04 4.51 71.23 0.32 2.36 16 7 C 0.51 20.72 7.79 87.65 0.68 21.40 16 8 O -0.57 -29.05 15.96 16.02 0.26 -28.80 16 9 N -0.59 -20.07 2.98 -826.50 -2.46 -22.53 16 10 C 0.10 2.40 6.36 86.20 0.55 2.95 16 11 C -0.12 -3.22 5.04 30.57 0.15 -3.07 16 12 C -0.08 -2.33 3.65 -9.37 -0.03 -2.36 16 13 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.13 -4.27 6.48 32.88 0.21 -4.06 16 15 C 0.18 9.05 4.67 87.44 0.41 9.46 16 16 N -0.61 -30.96 3.19 -673.27 -2.15 -33.11 16 17 C -0.20 -11.99 9.64 84.03 0.81 -11.18 16 18 H 0.07 4.17 6.38 -2.91 -0.02 4.15 16 19 C -0.06 -3.89 5.49 84.86 0.47 -3.42 16 20 N -0.95 -60.02 10.38 21.65 0.22 -59.79 16 21 Si 0.95 51.73 29.55 68.60 2.03 53.75 16 22 H -0.28 -15.52 7.11 99.48 0.71 -14.81 16 23 H -0.28 -14.96 7.11 99.48 0.71 -14.26 16 24 H -0.30 -16.27 7.11 99.48 0.71 -15.56 16 25 C 0.14 5.30 2.96 44.18 0.13 5.43 16 26 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 27 C 0.12 4.34 5.54 85.18 0.47 4.82 16 28 N -0.43 -12.59 11.54 -172.59 -1.99 -14.58 16 29 O 0.10 2.29 11.19 71.25 0.80 3.08 16 30 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 32 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.19 3.85 8.06 -2.91 -0.02 3.82 16 34 H 0.09 3.08 7.79 -2.38 -0.02 3.06 16 35 H 0.12 3.16 7.91 -2.39 -0.02 3.14 16 36 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.09 1.86 6.02 -2.39 -0.01 1.84 16 38 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.03 1.18 6.84 -2.39 -0.02 1.17 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.08 2.43 7.97 -2.39 -0.02 2.41 16 42 H 0.00 0.27 7.03 -2.39 -0.02 0.26 16 43 H 0.00 -0.12 7.56 -2.39 -0.02 -0.14 16 44 H 0.24 15.04 8.31 -92.71 -0.77 14.26 16 45 H 0.05 2.48 5.35 -2.39 -0.01 2.46 16 46 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 Total: -1.00 -87.78 367.50 3.05 -84.73 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.00 Total: 5.11 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 6.04 Total: 23.71 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -6.38 Total: -130.02 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: 0.36 Total: -37.28 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 2.03 Total: 53.75 kcal Total: -87.78 3.05 -84.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042100689.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.479 kcal (2) G-P(sol) polarization free energy of solvation -87.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds