Wall clock time and date at job start Tue Mar 31 2020 19:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35282 * 126.70874 * 2 1 4 4 C 1.41935 * 103.95734 * 180.11026 * 3 2 1 5 5 O 1.35705 * 126.87606 * 179.90799 * 4 3 2 6 6 C 1.42895 * 117.00032 * 179.70603 * 5 4 3 7 7 C 1.50700 * 109.47359 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99707 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00299 * 180.02562 * 7 6 5 10 10 C 1.46595 * 119.75365 * 359.97438 * 9 7 6 11 11 C 1.53887 * 110.71711 * 227.76898 * 10 9 7 12 12 C 1.51976 * 107.29287 * 308.19383 * 11 10 9 13 13 H 1.08998 * 111.02218 * 302.64446 * 12 11 10 14 14 C 1.53707 * 114.99563 * 175.42877 * 12 11 10 15 15 C 1.55302 * 101.81130 * 206.54662 * 14 12 11 16 16 N 1.48157 * 107.04468 * 22.44205 * 15 14 12 17 17 C 1.36936 * 126.39766 * 185.00604 * 16 15 14 18 18 H 1.07999 * 119.99939 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00165 * 359.97438 * 17 16 15 20 20 N 1.31628 * 119.99957 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00193 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47352 * 59.99776 * 21 19 17 23 23 H 1.48504 * 109.47103 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46536 * 299.99851 * 21 19 17 25 25 C 1.45501 * 107.20341 * 5.00159 * 16 15 14 26 26 H 1.09005 * 108.97836 * 86.35233 * 25 16 15 27 27 C 1.47796 * 119.75826 * 180.02562 * 9 7 6 28 28 N 1.30619 * 106.24113 * 359.64231 * 4 3 2 29 29 O 1.20911 * 111.49953 * 0.22725 * 28 4 3 30 30 H 1.08996 * 109.47115 * 180.26329 * 1 2 3 31 31 H 1.09006 * 109.47224 * 300.26815 * 1 2 3 32 32 H 1.08994 * 109.46897 * 60.26489 * 1 2 3 33 33 H 1.07994 * 128.02037 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.47188 * 60.00189 * 6 5 4 35 35 H 1.08998 * 109.47156 * 300.00104 * 6 5 4 36 36 H 1.09001 * 109.22818 * 107.45170 * 10 9 7 37 37 H 1.09000 * 109.22832 * 348.09305 * 10 9 7 38 38 H 1.09003 * 109.89222 * 188.74542 * 11 10 9 39 39 H 1.09004 * 109.88612 * 67.63885 * 11 10 9 40 40 H 1.08998 * 110.95661 * 324.67381 * 14 12 11 41 41 H 1.08990 * 110.96350 * 88.41538 * 14 12 11 42 42 H 1.09002 * 109.91856 * 141.79466 * 15 14 12 43 43 H 1.09003 * 109.91811 * 263.09569 * 15 14 12 44 44 H 0.96994 * 120.00094 * 180.02562 * 20 19 17 45 45 H 1.08999 * 110.06371 * 247.93233 * 27 9 7 46 46 H 1.09000 * 110.06466 * 9.39166 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6245 0.5356 -0.0027 5 8 4.7953 1.2218 -0.0054 6 6 5.9988 0.4513 -0.0012 7 6 7.1880 1.3771 -0.0045 8 8 7.0212 2.5784 -0.0103 9 7 8.4367 0.8701 -0.0019 10 6 8.6320 -0.5828 0.0046 11 6 9.6631 -0.9887 1.0724 12 6 10.9024 -0.1376 0.8502 13 1 11.2896 -0.2669 -0.1604 14 6 12.0133 -0.3224 1.8964 15 6 12.7358 1.0511 1.8388 16 7 11.7685 2.0279 1.2863 17 6 12.0228 3.3375 0.9773 18 1 11.2363 3.9606 0.5781 19 6 13.2913 3.8643 1.1782 20 7 14.2498 3.1050 1.6653 21 14 13.6380 5.6510 0.7574 22 1 12.7527 6.5301 1.5628 23 1 15.0570 5.9650 1.0626 24 1 13.3798 5.8782 -0.6872 25 6 10.4979 1.3357 1.1332 26 1 9.9496 1.3888 2.0739 27 6 9.5990 1.7829 -0.0046 28 7 3.4765 -0.7621 0.0039 29 8 2.3085 -1.0749 0.0055 30 1 -0.3633 -1.0276 0.0047 31 1 -0.3634 0.5180 0.8876 32 1 -0.3633 0.5097 -0.8923 33 1 2.0312 2.1263 -0.0004 34 1 6.0282 -0.1815 -0.8882 35 1 6.0274 -0.1731 0.8917 36 1 8.9860 -0.9018 -0.9758 37 1 7.6817 -1.0718 0.2189 38 1 9.9136 -2.0440 0.9639 39 1 9.2590 -0.8029 2.0675 40 1 11.5915 -0.5000 2.8856 41 1 12.6874 -1.1298 1.6108 42 1 13.0380 1.3541 2.8414 43 1 13.6086 0.9847 1.1892 44 1 15.1360 3.4732 1.8060 45 1 10.1313 1.7080 -0.9529 46 1 9.2692 2.8089 0.1586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042100691.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:14 Heat of formation + Delta-G solvation = 33.807047 kcal Electronic energy + Delta-G solvation = -29065.211521 eV Core-core repulsion = 24960.223771 eV Total energy + Delta-G solvation = -4104.987750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.17775 -40.45220 -39.11123 -37.94040 -35.47207 -34.17227 -32.94753 -32.83108 -31.35151 -30.27508 -28.75550 -28.33832 -27.66040 -24.73508 -23.74470 -23.69971 -22.32870 -21.65407 -20.16328 -19.81092 -19.07439 -18.22334 -18.13673 -17.14523 -16.98052 -16.44698 -16.24045 -15.76705 -14.89236 -14.75256 -14.43896 -14.37099 -14.23046 -13.97145 -13.73970 -13.71477 -13.50218 -13.18032 -12.91903 -12.80275 -12.74673 -12.30202 -12.02767 -11.86593 -11.53393 -11.42463 -11.32945 -10.96812 -10.83595 -10.74602 -10.18086 -10.00422 -9.90968 -9.83223 -9.77525 -9.65033 -9.50989 -9.47447 -8.63317 -8.53670 -6.86726 -5.72190 -3.06229 1.09503 1.98805 2.12790 2.55779 2.77620 3.22892 3.42980 3.46961 3.48732 3.89262 4.27870 4.44401 4.50493 4.61203 4.73948 4.78524 4.83402 4.87020 4.92056 4.92684 5.08994 5.18403 5.32351 5.33654 5.42138 5.57095 5.59157 5.63685 5.73383 5.85197 5.96697 6.02677 6.08131 6.12905 6.33099 6.41035 6.52872 6.60119 6.70780 6.75416 7.01629 7.39706 7.54094 7.59427 7.80319 7.94399 8.14803 8.22728 9.18484 9.81290 10.47617 11.39991 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.002419 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.797633 B =11572.015802 C =12716.893002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.233 4.233 4 C 0.215 3.785 5 O -0.256 6.256 6 C 0.048 3.952 7 C 0.514 3.486 8 O -0.518 6.518 9 N -0.601 5.601 10 C 0.104 3.896 11 C -0.120 4.120 12 C -0.113 4.113 13 H 0.078 0.922 14 C -0.138 4.138 15 C 0.177 3.823 16 N -0.592 5.592 17 C -0.230 4.230 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.156 3.844 26 H 0.025 0.975 27 C 0.118 3.882 28 N -0.413 5.413 29 O 0.098 5.902 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.179 0.821 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.038 0.962 43 H 0.056 0.944 44 H 0.253 0.747 45 H 0.074 0.926 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.605 -12.666 -3.550 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.255 4.255 4 C 0.017 3.983 5 O -0.161 6.161 6 C -0.031 4.031 7 C 0.299 3.701 8 O -0.393 6.393 9 N -0.336 5.336 10 C -0.019 4.019 11 C -0.158 4.158 12 C -0.133 4.133 13 H 0.097 0.903 14 C -0.176 4.176 15 C 0.053 3.947 16 N -0.317 5.317 17 C -0.358 4.358 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.569 5.569 21 Si 0.741 3.259 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.047 3.953 26 H 0.042 0.958 27 C -0.003 4.003 28 N -0.141 5.141 29 O 0.038 5.962 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.196 0.804 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.550 -12.546 -3.536 26.047 hybrid contribution 0.197 1.466 -0.165 1.488 sum -22.353 -11.081 -3.700 25.222 Atomic orbital electron populations 1.20385 0.83485 1.04923 1.04438 1.24348 0.96478 0.85586 1.00952 1.21811 0.88311 1.01795 1.13552 1.22081 0.88526 0.88006 0.99666 1.86301 1.10017 1.30837 1.88898 1.22587 0.82370 0.93704 1.04421 1.19840 0.83682 0.88823 0.77728 1.90762 1.85052 1.15058 1.48448 1.48194 1.05351 1.07315 1.72749 1.21821 1.00048 0.79737 1.00279 1.21813 0.95476 0.99899 0.98655 1.22269 0.94439 0.96576 0.99970 0.90342 1.22734 0.97398 0.99993 0.97509 1.21554 0.91333 0.83404 0.98411 1.44174 1.04977 1.07785 1.74775 1.18999 0.95440 0.84768 1.36586 0.90314 1.24789 0.95977 0.98251 1.01212 1.69933 1.02200 1.34578 1.50171 0.86211 0.77002 0.84437 0.78226 1.21091 1.21618 1.21080 1.20987 0.88925 0.90659 0.94735 0.95767 1.21782 0.84413 0.94069 1.00053 1.74153 0.97917 1.14220 1.27799 1.84789 1.10309 1.31997 1.69138 0.89606 0.88842 0.88862 0.80355 0.88717 0.88624 0.91123 0.90591 0.90589 0.91304 0.92537 0.92162 0.94379 0.92577 0.93691 0.90805 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.21 10.45 36.00 0.38 0.17 16 2 C -0.01 -0.07 7.48 -35.36 -0.26 -0.34 16 3 C -0.23 -2.21 11.11 -39.22 -0.44 -2.65 16 4 C 0.22 2.72 8.01 -16.65 -0.13 2.59 16 5 O -0.26 -3.78 9.74 -38.73 -0.38 -4.15 16 6 C 0.05 0.62 4.47 36.01 0.16 0.78 16 7 C 0.51 8.44 7.75 -10.99 -0.09 8.36 16 8 O -0.52 -10.79 15.87 -14.36 -0.23 -11.01 16 9 N -0.60 -9.31 3.01 -172.76 -0.52 -9.83 16 10 C 0.10 1.20 6.22 -3.53 -0.02 1.18 16 11 C -0.12 -1.49 5.72 -26.79 -0.15 -1.64 16 12 C -0.11 -1.87 2.61 -89.51 -0.23 -2.10 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 14 C -0.14 -2.47 6.54 -25.14 -0.16 -2.64 16 15 C 0.18 4.22 5.45 -1.91 -0.01 4.21 16 16 N -0.59 -14.91 3.35 -162.93 -0.55 -15.45 16 17 C -0.23 -6.39 9.88 -15.06 -0.15 -6.54 16 18 H 0.08 2.15 7.41 -52.49 -0.39 1.76 16 19 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 20 N -0.92 -27.00 10.44 55.49 0.58 -26.42 16 21 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.16 3.19 2.75 -67.85 -0.19 3.01 16 26 H 0.03 0.54 7.94 -51.93 -0.41 0.13 16 27 C 0.12 2.26 5.69 -3.97 -0.02 2.23 16 28 N -0.41 -5.01 11.54 30.38 0.35 -4.66 16 29 O 0.10 0.98 11.19 17.07 0.19 1.17 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.09 1.03 7.99 -51.93 -0.42 0.61 16 35 H 0.10 1.08 7.55 -51.93 -0.39 0.68 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.68 5.84 -51.93 -0.30 0.38 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.89 7.99 -51.93 -0.41 0.47 16 40 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 43 H 0.06 1.47 7.21 -51.93 -0.37 1.10 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 46 H 0.09 2.03 6.76 -51.93 -0.35 1.68 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -34.63 371.70 -8.21 -42.84 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.82 Total: -1.87 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -1.42 Total: 6.35 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.14 Total: -56.36 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.41 Total: -14.00 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.63 -8.21 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042100691.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.648 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds