Wall clock time and date at job start Tue Mar 31 2020 19:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35282 * 126.70874 * 2 1 4 4 C 1.41935 * 103.95734 * 180.11026 * 3 2 1 5 5 O 1.35705 * 126.87606 * 179.90799 * 4 3 2 6 6 C 1.42895 * 117.00032 * 179.70603 * 5 4 3 7 7 C 1.50700 * 109.47359 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99707 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00299 * 180.02562 * 7 6 5 10 10 C 1.46595 * 119.75365 * 359.97438 * 9 7 6 11 11 C 1.53887 * 110.71711 * 227.76898 * 10 9 7 12 12 C 1.51976 * 107.29287 * 308.19383 * 11 10 9 13 13 H 1.08998 * 111.02218 * 302.64446 * 12 11 10 14 14 C 1.53707 * 114.99563 * 175.42877 * 12 11 10 15 15 C 1.55302 * 101.81130 * 206.54662 * 14 12 11 16 16 N 1.48157 * 107.04468 * 22.44205 * 15 14 12 17 17 C 1.36936 * 126.39766 * 185.00604 * 16 15 14 18 18 H 1.07999 * 119.99939 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00165 * 359.97438 * 17 16 15 20 20 N 1.31628 * 119.99957 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00193 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47352 * 59.99776 * 21 19 17 23 23 H 1.48504 * 109.47103 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46536 * 299.99851 * 21 19 17 25 25 C 1.45501 * 107.20341 * 5.00159 * 16 15 14 26 26 H 1.09005 * 108.97836 * 86.35233 * 25 16 15 27 27 C 1.47796 * 119.75826 * 180.02562 * 9 7 6 28 28 N 1.30619 * 106.24113 * 359.64231 * 4 3 2 29 29 O 1.20911 * 111.49953 * 0.22725 * 28 4 3 30 30 H 1.08996 * 109.47115 * 180.26329 * 1 2 3 31 31 H 1.09006 * 109.47224 * 300.26815 * 1 2 3 32 32 H 1.08994 * 109.46897 * 60.26489 * 1 2 3 33 33 H 1.07994 * 128.02037 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.47188 * 60.00189 * 6 5 4 35 35 H 1.08998 * 109.47156 * 300.00104 * 6 5 4 36 36 H 1.09001 * 109.22818 * 107.45170 * 10 9 7 37 37 H 1.09000 * 109.22832 * 348.09305 * 10 9 7 38 38 H 1.09003 * 109.89222 * 188.74542 * 11 10 9 39 39 H 1.09004 * 109.88612 * 67.63885 * 11 10 9 40 40 H 1.08998 * 110.95661 * 324.67381 * 14 12 11 41 41 H 1.08990 * 110.96350 * 88.41538 * 14 12 11 42 42 H 1.09002 * 109.91856 * 141.79466 * 15 14 12 43 43 H 1.09003 * 109.91811 * 263.09569 * 15 14 12 44 44 H 0.96994 * 120.00094 * 180.02562 * 20 19 17 45 45 H 1.08999 * 110.06371 * 247.93233 * 27 9 7 46 46 H 1.09000 * 110.06466 * 9.39166 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6245 0.5356 -0.0027 5 8 4.7953 1.2218 -0.0054 6 6 5.9988 0.4513 -0.0012 7 6 7.1880 1.3771 -0.0045 8 8 7.0212 2.5784 -0.0103 9 7 8.4367 0.8701 -0.0019 10 6 8.6320 -0.5828 0.0046 11 6 9.6631 -0.9887 1.0724 12 6 10.9024 -0.1376 0.8502 13 1 11.2896 -0.2669 -0.1604 14 6 12.0133 -0.3224 1.8964 15 6 12.7358 1.0511 1.8388 16 7 11.7685 2.0279 1.2863 17 6 12.0228 3.3375 0.9773 18 1 11.2363 3.9606 0.5781 19 6 13.2913 3.8643 1.1782 20 7 14.2498 3.1050 1.6653 21 14 13.6380 5.6510 0.7574 22 1 12.7527 6.5301 1.5628 23 1 15.0570 5.9650 1.0626 24 1 13.3798 5.8782 -0.6872 25 6 10.4979 1.3357 1.1332 26 1 9.9496 1.3888 2.0739 27 6 9.5990 1.7829 -0.0046 28 7 3.4765 -0.7621 0.0039 29 8 2.3085 -1.0749 0.0055 30 1 -0.3633 -1.0276 0.0047 31 1 -0.3634 0.5180 0.8876 32 1 -0.3633 0.5097 -0.8923 33 1 2.0312 2.1263 -0.0004 34 1 6.0282 -0.1815 -0.8882 35 1 6.0274 -0.1731 0.8917 36 1 8.9860 -0.9018 -0.9758 37 1 7.6817 -1.0718 0.2189 38 1 9.9136 -2.0440 0.9639 39 1 9.2590 -0.8029 2.0675 40 1 11.5915 -0.5000 2.8856 41 1 12.6874 -1.1298 1.6108 42 1 13.0380 1.3541 2.8414 43 1 13.6086 0.9847 1.1892 44 1 15.1360 3.4732 1.8060 45 1 10.1313 1.7080 -0.9529 46 1 9.2692 2.8089 0.1586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042100691.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:13 Heat of formation + Delta-G solvation = 9.821950 kcal Electronic energy + Delta-G solvation = -29066.251593 eV Core-core repulsion = 24960.223771 eV Total energy + Delta-G solvation = -4106.027822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.94521 -41.74085 -40.32629 -39.28324 -36.97606 -34.78786 -34.72456 -33.59361 -32.95874 -31.71459 -30.34817 -29.28563 -28.49393 -26.58208 -25.25059 -24.48314 -23.63133 -22.54405 -21.83285 -21.33204 -20.31144 -19.11049 -18.93486 -18.66140 -18.05108 -17.72603 -17.42372 -17.04164 -16.73845 -16.13017 -15.75892 -15.72242 -15.41122 -15.05809 -14.88084 -14.63725 -14.40632 -14.11870 -14.02900 -13.89994 -13.82587 -13.59885 -13.22894 -13.19025 -13.11096 -12.88764 -12.74449 -12.56861 -12.17595 -12.13674 -12.04990 -11.79649 -11.56479 -11.42488 -11.07743 -11.04121 -10.75226 -10.51209 -10.27529 -9.85483 -8.94040 -7.89227 -5.24319 0.44207 1.10218 1.18072 1.30164 1.41333 1.44050 1.50390 2.03577 2.29284 2.46813 3.07387 3.20497 3.28561 3.45696 3.72426 3.79551 3.84901 3.89640 3.92871 3.95444 3.99341 4.21937 4.24282 4.26080 4.38451 4.49568 4.57877 4.66740 4.77071 4.77584 4.80593 4.84576 4.87588 4.91123 5.07794 5.12430 5.17843 5.28383 5.30973 5.44941 5.54658 5.64230 5.75945 5.80917 6.15927 6.18847 6.87943 7.05173 7.21004 7.73271 8.39989 9.21297 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.002419 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.797633 B =11572.015802 C =12716.893002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.012 3.988 3 C -0.254 4.254 4 C 0.189 3.811 5 O -0.284 6.284 6 C 0.058 3.942 7 C 0.509 3.491 8 O -0.574 6.574 9 N -0.596 5.596 10 C 0.097 3.903 11 C -0.111 4.111 12 C -0.096 4.096 13 H 0.080 0.920 14 C -0.122 4.122 15 C 0.180 3.820 16 N -0.614 5.614 17 C -0.240 4.240 18 H 0.074 0.926 19 C -0.062 4.062 20 N -0.947 5.947 21 Si 0.972 3.028 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.277 1.277 25 C 0.147 3.853 26 H 0.008 0.992 27 C 0.130 3.870 28 N -0.427 5.427 29 O 0.094 5.906 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.192 0.808 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.088 0.912 42 H -0.001 1.001 43 H 0.024 0.976 44 H 0.248 0.752 45 H 0.072 0.928 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.444 -15.467 -4.270 30.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.051 4.051 3 C -0.276 4.276 4 C -0.008 4.008 5 O -0.190 6.190 6 C -0.020 4.020 7 C 0.297 3.703 8 O -0.454 6.454 9 N -0.330 5.330 10 C -0.024 4.024 11 C -0.149 4.149 12 C -0.116 4.116 13 H 0.098 0.902 14 C -0.160 4.160 15 C 0.055 3.945 16 N -0.339 5.339 17 C -0.369 4.369 18 H 0.092 0.908 19 C -0.255 4.255 20 N -0.596 5.596 21 Si 0.800 3.200 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.203 1.203 25 C 0.039 3.961 26 H 0.026 0.974 27 C 0.007 3.993 28 N -0.155 5.155 29 O 0.034 5.966 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.210 0.790 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.017 0.983 43 H 0.042 0.958 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.424 -15.415 -4.262 30.036 hybrid contribution 0.964 2.329 0.084 2.522 sum -24.460 -13.086 -4.179 28.053 Atomic orbital electron populations 1.20682 0.79862 1.06512 1.06081 1.25115 0.98023 0.84030 0.97946 1.22156 0.87489 1.03183 1.14792 1.22439 0.88543 0.88705 1.01080 1.86242 1.11047 1.32243 1.89499 1.22560 0.80424 0.92433 1.06548 1.20550 0.84741 0.88666 0.76350 1.90733 1.85905 1.17697 1.51015 1.48231 1.04043 1.08758 1.71974 1.22222 1.01950 0.76872 1.01375 1.21820 0.92979 1.01229 0.98875 1.22205 0.95819 0.94024 0.99530 0.90193 1.22605 0.97729 0.96704 0.98944 1.21381 0.91223 0.86623 0.95267 1.44441 1.07092 1.07572 1.74765 1.19261 0.95379 0.86436 1.35788 0.90841 1.25565 0.96000 1.02073 1.01861 1.70138 1.02146 1.35882 1.51387 0.85253 0.76554 0.79991 0.78179 1.20921 1.21530 1.20265 1.21138 0.87287 0.93340 0.94338 0.97449 1.21342 0.85426 0.93280 0.99241 1.74122 0.99043 1.13971 1.28373 1.84745 1.10074 1.32828 1.68927 0.88069 0.87080 0.87014 0.79047 0.86109 0.86486 0.88846 0.86931 0.86392 0.91468 0.91211 0.89375 0.98264 0.95781 0.94296 0.91018 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.15 10.45 71.24 0.74 0.59 16 2 C 0.01 0.16 7.48 25.00 0.19 0.34 16 3 C -0.25 -4.49 11.11 22.50 0.25 -4.24 16 4 C 0.19 4.60 8.01 85.79 0.69 5.29 16 5 O -0.28 -8.30 9.74 -71.22 -0.69 -8.99 16 6 C 0.06 1.40 4.47 71.24 0.32 1.72 16 7 C 0.51 16.60 7.75 87.66 0.68 17.28 16 8 O -0.57 -24.94 15.87 15.99 0.25 -24.69 16 9 N -0.60 -17.83 3.01 -818.89 -2.47 -20.29 16 10 C 0.10 1.84 6.22 86.66 0.54 2.38 16 11 C -0.11 -2.28 5.72 30.56 0.17 -2.10 16 12 C -0.10 -2.99 2.61 -10.08 -0.03 -3.02 16 13 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 14 C -0.12 -4.18 6.54 31.62 0.21 -3.97 16 15 C 0.18 8.87 5.45 86.85 0.47 9.35 16 16 N -0.61 -32.16 3.35 -669.38 -2.24 -34.41 16 17 C -0.24 -13.94 9.88 84.03 0.83 -13.11 16 18 H 0.07 4.23 7.41 -2.91 -0.02 4.21 16 19 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 20 N -0.95 -57.91 10.44 21.65 0.23 -57.68 16 21 Si 0.97 47.76 29.55 68.60 2.03 49.79 16 22 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 C 0.15 6.11 2.75 45.58 0.13 6.24 16 26 H 0.01 0.36 7.94 -2.38 -0.02 0.34 16 27 C 0.13 5.10 5.69 85.72 0.49 5.59 16 28 N -0.43 -9.60 11.54 -172.60 -1.99 -11.59 16 29 O 0.09 1.69 11.19 71.25 0.80 2.49 16 30 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.11 -0.07 8.14 -2.38 -0.02 -0.09 16 32 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.12 2.25 7.99 -2.39 -0.02 2.24 16 35 H 0.12 2.29 7.55 -2.39 -0.02 2.28 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.11 1.42 5.84 -2.39 -0.01 1.41 16 38 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.46 7.99 -2.39 -0.02 1.45 16 40 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 41 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.00 -0.05 7.77 -2.39 -0.02 -0.07 16 43 H 0.02 1.32 7.21 -2.39 -0.02 1.30 16 44 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 46 H 0.06 2.63 6.76 -2.39 -0.02 2.61 16 Total: -1.00 -82.88 371.70 3.04 -79.84 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 0.99 Total: 6.37 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 6.14 Total: 19.18 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -6.47 Total: -123.98 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: 0.36 Total: -31.19 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -82.88 3.04 -79.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042100691.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.659 kcal (2) G-P(sol) polarization free energy of solvation -82.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds