Wall clock time and date at job start Tue Mar 31 2020 19:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34863 * 119.10203 * 2 1 4 4 C 1.41673 * 119.33939 * 179.69520 * 3 2 1 5 5 O 1.22088 * 121.07265 * 180.30013 * 4 3 2 6 6 C 1.47096 * 117.86312 * 0.53980 * 4 3 2 7 7 C 1.47290 * 120.88333 * 179.78229 * 6 4 3 8 8 O 1.21618 * 120.00037 * 24.36573 * 7 6 4 9 9 N 1.34779 * 120.00092 * 204.36991 * 7 6 4 10 10 C 1.46497 * 119.99923 * 1.95776 * 9 7 6 11 11 C 1.46494 * 120.00053 * 181.95765 * 9 7 6 12 12 H 1.09002 * 110.78328 * 3.23600 * 11 9 7 13 13 C 1.54326 * 110.71997 * 126.47479 * 11 9 7 14 14 N 1.47023 * 107.27139 * 140.55669 * 13 11 9 15 15 C 1.36933 * 125.65106 * 181.09586 * 14 13 11 16 16 H 1.08000 * 119.99915 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00345 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99716 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00302 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47383 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47304 * 120.00147 * 19 17 15 22 22 H 1.48502 * 109.47658 * 240.00228 * 19 17 15 23 23 C 1.47433 * 108.70345 * 1.06207 * 14 13 11 24 24 C 1.54910 * 104.82827 * 335.86845 * 23 14 13 25 25 H 1.08994 * 111.00843 * 278.90000 * 24 23 14 26 26 O 1.42905 * 111.00161 * 155.08580 * 24 23 14 27 27 C 1.37992 * 118.23693 * 359.50811 * 6 4 3 28 28 N 1.34350 * 120.37117 * 0.22920 * 27 6 4 29 29 C 1.46497 * 118.80572 * 180.02562 * 28 27 6 30 30 H 1.08996 * 109.47333 * 263.96701 * 1 2 3 31 31 H 1.09003 * 109.46794 * 23.96589 * 1 2 3 32 32 H 1.08990 * 109.47328 * 143.96322 * 1 2 3 33 33 H 1.07999 * 120.33100 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47424 * 264.40398 * 10 9 7 35 35 H 1.08997 * 109.47245 * 24.40191 * 10 9 7 36 36 H 1.09003 * 109.47483 * 144.40518 * 10 9 7 37 37 H 1.08996 * 109.88057 * 21.14150 * 13 11 9 38 38 H 1.08997 * 110.01536 * 260.04270 * 13 11 9 39 39 H 0.96998 * 120.00108 * 179.97438 * 18 17 15 40 40 H 1.09003 * 110.36298 * 217.03523 * 23 14 13 41 41 H 1.08997 * 110.36754 * 94.70781 * 23 14 13 42 42 H 0.96697 * 114.00365 * 61.45064 * 26 24 23 43 43 H 1.07998 * 119.81462 * 180.24937 * 27 6 4 44 44 H 1.09001 * 109.47088 * 95.98050 * 29 28 27 45 45 H 1.09003 * 109.46683 * 215.98219 * 29 28 27 46 46 H 1.08997 * 109.47110 * 335.97631 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1842 0.0066 5 8 4.2054 2.2325 0.0122 6 6 4.2725 -0.1133 0.0009 7 6 5.7437 -0.1848 0.0024 8 8 6.3970 0.7418 0.4424 9 7 6.3658 -1.2770 -0.4840 10 6 5.5803 -2.3747 -1.0533 11 6 7.8274 -1.3664 -0.4433 12 1 8.2542 -0.4986 0.0596 13 6 8.2756 -2.6722 0.2465 14 7 9.4362 -3.1829 -0.4976 15 6 10.1185 -4.3368 -0.2184 16 1 9.8134 -4.9572 0.6113 17 6 11.2022 -4.7093 -1.0018 18 7 11.5743 -3.9529 -2.0127 19 14 12.1334 -6.2830 -0.6205 20 1 11.5205 -6.9478 0.5576 21 1 12.0674 -7.1934 -1.7919 22 1 13.5521 -5.9595 -0.3244 23 6 9.7433 -2.2472 -1.5948 24 6 8.4086 -1.5123 -1.8745 25 1 7.7542 -2.1164 -2.5028 26 8 8.6427 -0.2323 -2.4652 27 6 3.5077 -1.2618 0.0000 28 7 2.1664 -1.1848 -0.0005 29 6 1.3880 -2.4258 -0.0009 30 1 -0.3634 -0.1080 1.0219 31 1 -0.3633 0.9391 -0.4174 32 1 -0.3633 -0.8309 -0.6045 33 1 1.6137 2.1083 -0.0004 34 1 5.4173 -3.1378 -0.2922 35 1 4.6189 -1.9933 -1.3971 36 1 6.1203 -2.8099 -1.8942 37 1 7.4669 -3.4025 0.2187 38 1 8.5574 -2.4705 1.2799 39 1 12.3318 -4.2129 -2.5599 40 1 10.0680 -2.7941 -2.4800 41 1 10.5096 -1.5369 -1.2843 42 1 9.0948 -0.2699 -3.3191 43 1 3.9900 -2.2282 -0.0001 44 1 1.1039 -2.6769 1.0210 45 1 0.4907 -2.2916 -0.6050 46 1 1.9903 -3.2323 -0.4192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047418284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:53 Heat of formation + Delta-G solvation = -11.401270 kcal Electronic energy + Delta-G solvation = -29853.709855 eV Core-core repulsion = 25746.761725 eV Total energy + Delta-G solvation = -4106.948130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.53961 -39.62351 -38.11102 -37.36753 -35.22329 -34.84673 -33.66431 -32.83772 -31.75394 -29.20534 -28.04227 -27.39431 -27.20598 -26.73448 -24.56126 -23.92097 -22.16491 -20.62156 -20.47303 -19.13460 -18.30062 -17.39783 -17.08282 -16.79200 -16.51573 -16.40164 -15.72518 -15.54569 -14.85858 -14.74848 -14.49879 -13.95001 -13.93024 -13.90822 -13.68207 -13.54639 -13.40323 -13.11508 -12.95301 -12.87857 -12.62051 -12.45714 -12.24853 -12.12029 -11.71714 -11.62106 -11.37120 -11.21734 -10.96251 -10.86677 -10.17498 -9.94941 -9.80782 -9.68785 -9.60368 -9.29120 -9.07555 -8.74047 -8.29072 -8.06211 -6.94297 -5.73655 -3.17174 0.74192 1.12342 2.08333 3.05889 3.18770 3.34836 3.40534 3.43114 3.78910 3.82675 4.09140 4.23630 4.38785 4.41990 4.49054 4.65961 4.74041 4.79949 4.87778 4.89860 5.00994 5.08017 5.22631 5.26661 5.38468 5.46554 5.49470 5.55500 5.58224 5.63357 5.84827 5.93906 6.07607 6.17795 6.23814 6.34045 6.51668 6.55375 6.63592 6.99465 7.36389 7.50858 7.67329 7.73090 8.13970 8.19214 8.31663 8.58992 9.11263 9.71981 10.34978 11.29952 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019925 B = 0.002894 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.925290 B = 9674.495516 C =10565.969157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.153 3.847 3 C -0.270 4.270 4 C 0.408 3.592 5 O -0.483 6.483 6 C -0.292 4.292 7 C 0.574 3.426 8 O -0.510 6.510 9 N -0.603 5.603 10 C 0.058 3.942 11 C 0.139 3.861 12 H 0.113 0.887 13 C 0.132 3.868 14 N -0.599 5.599 15 C -0.223 4.223 16 H 0.080 0.920 17 C -0.010 4.010 18 N -0.922 5.922 19 Si 0.917 3.083 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.128 3.872 24 C 0.064 3.936 25 H 0.058 0.942 26 O -0.561 6.561 27 C 0.148 3.852 28 N -0.474 5.474 29 C 0.049 3.951 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.151 0.849 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.253 0.747 40 H 0.112 0.888 41 H 0.025 0.975 42 H 0.374 0.626 43 H 0.189 0.811 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.976 -0.506 0.387 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.047 3.953 3 C -0.294 4.294 4 C 0.294 3.706 5 O -0.364 6.364 6 C -0.303 4.303 7 C 0.363 3.637 8 O -0.384 6.384 9 N -0.337 5.337 10 C -0.085 4.085 11 C 0.036 3.964 12 H 0.131 0.869 13 C 0.005 3.995 14 N -0.327 5.327 15 C -0.352 4.352 16 H 0.098 0.902 17 C -0.206 4.206 18 N -0.570 5.570 19 Si 0.748 3.252 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.002 3.998 24 C 0.003 3.997 25 H 0.076 0.924 26 O -0.365 6.365 27 C 0.019 3.981 28 N -0.162 5.162 29 C -0.092 4.092 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.129 0.871 41 H 0.043 0.957 42 H 0.220 0.780 43 H 0.206 0.794 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -26.532 0.500 1.119 26.560 hybrid contribution 0.753 -1.263 -0.340 1.509 sum -25.779 -0.763 0.779 25.802 Atomic orbital electron populations 1.21174 0.88172 1.04970 1.04020 1.20272 0.94798 0.85149 0.95058 1.22250 0.96256 0.97167 1.13769 1.18154 0.88251 0.87852 0.76339 1.90823 1.69985 1.33287 1.42294 1.22523 0.94481 0.95128 1.18193 1.17491 0.85962 0.81996 0.78287 1.90828 1.66059 1.35934 1.45565 1.47646 1.06868 1.18113 1.61038 1.22337 0.96717 0.90113 0.99341 1.22119 0.77661 1.00397 0.96252 0.86891 1.21526 0.91087 0.91777 0.95107 1.44288 1.32381 1.23886 1.32111 1.19121 1.08261 0.96562 1.11208 0.90170 1.24816 0.98534 0.99181 0.98053 1.69767 1.29007 1.37994 1.20232 0.85960 0.79655 0.82235 0.77381 1.20484 1.21719 1.21646 1.22594 0.90566 0.91492 0.95169 1.23727 0.98938 0.84199 0.92844 0.92402 1.86497 1.81552 1.29164 1.39304 1.23375 0.81910 1.01411 0.91367 1.42643 1.05372 1.07064 1.61113 1.22530 0.97802 0.84461 1.04455 0.89403 0.88959 0.90152 0.83137 0.92014 0.90537 0.90190 0.95140 0.94999 0.93613 0.87088 0.95657 0.78000 0.79437 0.89997 0.88851 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.32 9.34 36.00 0.34 0.01 16 2 C 0.15 1.08 6.64 -82.13 -0.55 0.53 16 3 C -0.27 -3.00 9.57 -39.47 -0.38 -3.38 16 4 C 0.41 6.83 6.94 -34.68 -0.24 6.59 16 5 O -0.48 -10.62 16.69 -12.76 -0.21 -10.83 16 6 C -0.29 -4.43 5.72 -102.72 -0.59 -5.02 16 7 C 0.57 11.05 7.48 -12.58 -0.09 10.95 16 8 O -0.51 -12.44 15.31 -12.33 -0.19 -12.63 16 9 N -0.60 -10.28 2.89 -173.16 -0.50 -10.78 16 10 C 0.06 0.67 7.57 59.85 0.45 1.12 16 11 C 0.14 2.83 3.09 -66.10 -0.20 2.63 16 12 H 0.11 2.65 7.01 -51.93 -0.36 2.28 16 13 C 0.13 2.79 6.87 -3.06 -0.02 2.77 16 14 N -0.60 -15.10 3.39 -170.07 -0.58 -15.68 16 15 C -0.22 -6.05 10.27 -15.06 -0.15 -6.20 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 18 N -0.92 -26.20 10.09 55.49 0.56 -25.64 16 19 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.13 3.10 5.62 -2.52 -0.01 3.09 16 24 C 0.06 1.30 3.99 -24.58 -0.10 1.20 16 25 H 0.06 1.10 6.35 -51.93 -0.33 0.77 16 26 O -0.56 -11.33 13.47 -35.23 -0.47 -11.81 16 27 C 0.15 1.36 7.80 -16.54 -0.13 1.23 16 28 N -0.47 -2.96 2.97 -119.75 -0.36 -3.31 16 29 C 0.05 0.07 9.98 59.85 0.60 0.66 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.20 7.97 -51.93 -0.41 -0.21 16 32 H 0.08 0.05 6.01 -51.93 -0.31 -0.27 16 33 H 0.15 1.44 8.01 -52.49 -0.42 1.02 16 34 H 0.06 0.57 6.81 -51.93 -0.35 0.21 16 35 H 0.08 0.69 4.83 -51.93 -0.25 0.44 16 36 H 0.08 0.99 6.37 -51.93 -0.33 0.66 16 37 H 0.03 0.59 6.57 -51.93 -0.34 0.24 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.37 5.90 9.11 45.56 0.42 6.31 16 43 H 0.19 1.26 4.20 -52.49 -0.22 1.04 16 44 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 45 H 0.09 -0.04 5.94 -51.93 -0.31 -0.35 16 46 H 0.09 0.00 7.86 -51.93 -0.41 -0.40 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -41.55 363.66 -7.65 -49.20 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.18 Total: 3.70 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: -1.17 Total: 15.82 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.87 Total: -55.42 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.88 Total: -35.27 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -41.55 -7.65 -49.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047418284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.795 kcal (2) G-P(sol) polarization free energy of solvation -41.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds