Wall clock time and date at job start Tue Mar 31 2020 19:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34863 * 119.10203 * 2 1 4 4 C 1.41673 * 119.33939 * 179.69520 * 3 2 1 5 5 O 1.22088 * 121.07265 * 180.30013 * 4 3 2 6 6 C 1.47096 * 117.86312 * 0.53980 * 4 3 2 7 7 C 1.47290 * 120.88333 * 179.78229 * 6 4 3 8 8 O 1.21618 * 120.00037 * 24.36573 * 7 6 4 9 9 N 1.34779 * 120.00092 * 204.36991 * 7 6 4 10 10 C 1.46497 * 119.99923 * 1.95776 * 9 7 6 11 11 C 1.46494 * 120.00053 * 181.95765 * 9 7 6 12 12 H 1.09002 * 110.78328 * 3.23600 * 11 9 7 13 13 C 1.54326 * 110.71997 * 126.47479 * 11 9 7 14 14 N 1.47023 * 107.27139 * 140.55669 * 13 11 9 15 15 C 1.36933 * 125.65106 * 181.09586 * 14 13 11 16 16 H 1.08000 * 119.99915 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00345 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99716 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00302 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47383 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47304 * 120.00147 * 19 17 15 22 22 H 1.48502 * 109.47658 * 240.00228 * 19 17 15 23 23 C 1.47433 * 108.70345 * 1.06207 * 14 13 11 24 24 C 1.54910 * 104.82827 * 335.86845 * 23 14 13 25 25 H 1.08994 * 111.00843 * 278.90000 * 24 23 14 26 26 O 1.42905 * 111.00161 * 155.08580 * 24 23 14 27 27 C 1.37992 * 118.23693 * 359.50811 * 6 4 3 28 28 N 1.34350 * 120.37117 * 0.22920 * 27 6 4 29 29 C 1.46497 * 118.80572 * 180.02562 * 28 27 6 30 30 H 1.08996 * 109.47333 * 263.96701 * 1 2 3 31 31 H 1.09003 * 109.46794 * 23.96589 * 1 2 3 32 32 H 1.08990 * 109.47328 * 143.96322 * 1 2 3 33 33 H 1.07999 * 120.33100 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47424 * 264.40398 * 10 9 7 35 35 H 1.08997 * 109.47245 * 24.40191 * 10 9 7 36 36 H 1.09003 * 109.47483 * 144.40518 * 10 9 7 37 37 H 1.08996 * 109.88057 * 21.14150 * 13 11 9 38 38 H 1.08997 * 110.01536 * 260.04270 * 13 11 9 39 39 H 0.96998 * 120.00108 * 179.97438 * 18 17 15 40 40 H 1.09003 * 110.36298 * 217.03523 * 23 14 13 41 41 H 1.08997 * 110.36754 * 94.70781 * 23 14 13 42 42 H 0.96697 * 114.00365 * 61.45064 * 26 24 23 43 43 H 1.07998 * 119.81462 * 180.24937 * 27 6 4 44 44 H 1.09001 * 109.47088 * 95.98050 * 29 28 27 45 45 H 1.09003 * 109.46683 * 215.98219 * 29 28 27 46 46 H 1.08997 * 109.47110 * 335.97631 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1842 0.0066 5 8 4.2054 2.2325 0.0122 6 6 4.2725 -0.1133 0.0009 7 6 5.7437 -0.1848 0.0024 8 8 6.3970 0.7418 0.4424 9 7 6.3658 -1.2770 -0.4840 10 6 5.5803 -2.3747 -1.0533 11 6 7.8274 -1.3664 -0.4433 12 1 8.2542 -0.4986 0.0596 13 6 8.2756 -2.6722 0.2465 14 7 9.4362 -3.1829 -0.4976 15 6 10.1185 -4.3368 -0.2184 16 1 9.8134 -4.9572 0.6113 17 6 11.2022 -4.7093 -1.0018 18 7 11.5743 -3.9529 -2.0127 19 14 12.1334 -6.2830 -0.6205 20 1 11.5205 -6.9478 0.5576 21 1 12.0674 -7.1934 -1.7919 22 1 13.5521 -5.9595 -0.3244 23 6 9.7433 -2.2472 -1.5948 24 6 8.4086 -1.5123 -1.8745 25 1 7.7542 -2.1164 -2.5028 26 8 8.6427 -0.2323 -2.4652 27 6 3.5077 -1.2618 0.0000 28 7 2.1664 -1.1848 -0.0005 29 6 1.3880 -2.4258 -0.0009 30 1 -0.3634 -0.1080 1.0219 31 1 -0.3633 0.9391 -0.4174 32 1 -0.3633 -0.8309 -0.6045 33 1 1.6137 2.1083 -0.0004 34 1 5.4173 -3.1378 -0.2922 35 1 4.6189 -1.9933 -1.3971 36 1 6.1203 -2.8099 -1.8942 37 1 7.4669 -3.4025 0.2187 38 1 8.5574 -2.4705 1.2799 39 1 12.3318 -4.2129 -2.5599 40 1 10.0680 -2.7941 -2.4800 41 1 10.5096 -1.5369 -1.2843 42 1 9.0948 -0.2699 -3.3191 43 1 3.9900 -2.2282 -0.0001 44 1 1.1039 -2.6769 1.0210 45 1 0.4907 -2.2916 -0.6050 46 1 1.9903 -3.2323 -0.4192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047418284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:52 Heat of formation + Delta-G solvation = -45.346406 kcal Electronic energy + Delta-G solvation = -29855.181826 eV Core-core repulsion = 25746.761725 eV Total energy + Delta-G solvation = -4108.420102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.40424 -40.98219 -39.46661 -38.80108 -36.78992 -36.47733 -34.59421 -33.90041 -33.30420 -30.61489 -29.37838 -28.58711 -28.22355 -27.59959 -26.31749 -24.89035 -23.26751 -22.37149 -21.79008 -20.53213 -19.36518 -19.03210 -18.30445 -18.22642 -17.48214 -17.40005 -16.99316 -16.66342 -16.47227 -16.05943 -15.68721 -15.46992 -15.32462 -14.94035 -14.82995 -14.55096 -14.40843 -14.13986 -13.87774 -13.84100 -13.79403 -13.56684 -13.40987 -13.23135 -13.04987 -12.89973 -12.74921 -12.68599 -12.48863 -12.38183 -11.98874 -11.92024 -11.49643 -11.23552 -10.96268 -10.77253 -10.43143 -10.33178 -9.71254 -9.05178 -8.97284 -7.79828 -5.27257 -0.19180 0.32305 1.47076 1.49378 1.51441 1.61208 1.73568 1.91162 2.48705 2.72354 3.08072 3.23728 3.32271 3.47586 3.60018 3.66549 3.78111 3.81344 3.94259 4.04664 4.12970 4.18530 4.29322 4.40411 4.45796 4.47376 4.50470 4.53228 4.73748 4.75385 4.78298 4.83345 4.85608 4.90493 4.98687 5.18089 5.27394 5.35158 5.46105 5.51674 5.66204 5.73042 5.81325 6.19404 6.38657 6.81945 7.03921 7.08120 7.22820 7.69308 8.32752 9.22503 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019925 B = 0.002894 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.925290 B = 9674.495516 C =10565.969157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.189 3.811 3 C -0.305 4.305 4 C 0.382 3.618 5 O -0.576 6.576 6 C -0.350 4.350 7 C 0.567 3.433 8 O -0.585 6.585 9 N -0.598 5.598 10 C 0.044 3.956 11 C 0.147 3.853 12 H 0.069 0.931 13 C 0.138 3.862 14 N -0.616 5.616 15 C -0.237 4.237 16 H 0.091 0.909 17 C -0.066 4.066 18 N -0.951 5.951 19 Si 0.986 3.014 20 H -0.263 1.263 21 H -0.287 1.287 22 H -0.299 1.299 23 C 0.137 3.863 24 C 0.081 3.919 25 H 0.085 0.915 26 O -0.577 6.577 27 C 0.201 3.799 28 N -0.456 5.456 29 C 0.030 3.970 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.155 0.845 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.021 0.979 39 H 0.249 0.751 40 H 0.092 0.908 41 H -0.017 1.017 42 H 0.392 0.608 43 H 0.227 0.773 44 H 0.105 0.895 45 H 0.123 0.877 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.085 -5.275 0.293 32.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.081 3.919 3 C -0.328 4.328 4 C 0.276 3.724 5 O -0.466 6.466 6 C -0.361 4.361 7 C 0.358 3.642 8 O -0.465 6.465 9 N -0.331 5.331 10 C -0.096 4.096 11 C 0.041 3.959 12 H 0.087 0.913 13 C 0.012 3.988 14 N -0.344 5.344 15 C -0.365 4.365 16 H 0.109 0.891 17 C -0.258 4.258 18 N -0.600 5.600 19 Si 0.814 3.186 20 H -0.187 1.187 21 H -0.214 1.214 22 H -0.227 1.227 23 C 0.011 3.989 24 C 0.021 3.979 25 H 0.103 0.897 26 O -0.384 6.384 27 C 0.068 3.932 28 N -0.139 5.139 29 C -0.108 4.108 30 H 0.129 0.871 31 H 0.116 0.884 32 H 0.134 0.866 33 H 0.172 0.828 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.001 0.999 42 H 0.241 0.759 43 H 0.242 0.758 44 H 0.123 0.877 45 H 0.142 0.858 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -31.760 -4.363 1.010 32.074 hybrid contribution 2.126 0.053 -0.302 2.148 sum -29.634 -4.310 0.708 29.954 Atomic orbital electron populations 1.21408 0.83694 1.06923 1.06114 1.20888 0.97147 0.83935 0.89904 1.22094 0.93606 0.99664 1.17478 1.18999 0.90584 0.87595 0.75242 1.90764 1.71893 1.35777 1.48129 1.22043 0.92457 0.96751 1.24836 1.18207 0.87734 0.81213 0.76996 1.90773 1.67949 1.38700 1.49045 1.47633 1.05457 1.19230 1.60746 1.22815 0.97205 0.89199 1.00408 1.21683 0.80256 0.98336 0.95585 0.91319 1.21579 0.90742 0.92562 0.93955 1.44532 1.33401 1.23631 1.32802 1.19530 1.08594 0.97057 1.11322 0.89138 1.25688 0.99604 1.02380 0.98149 1.69992 1.29257 1.39609 1.21152 0.84905 0.77510 0.78537 0.77684 1.18670 1.21378 1.22657 1.22334 0.91725 0.90634 0.94221 1.23533 0.96970 0.84006 0.93429 0.89741 1.86484 1.81838 1.29331 1.40719 1.23663 0.82936 1.00484 0.86128 1.43330 1.04837 1.09103 1.56596 1.23178 0.98650 0.82054 1.06963 0.87137 0.88432 0.86575 0.82752 0.88034 0.87523 0.90261 0.91503 0.96097 0.94150 0.88980 0.99869 0.75903 0.75775 0.87688 0.85848 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.13 9.34 71.24 0.67 0.80 16 2 C 0.19 1.88 6.64 41.20 0.27 2.15 16 3 C -0.31 -6.76 9.57 22.34 0.21 -6.54 16 4 C 0.38 13.83 6.94 25.45 0.18 14.01 16 5 O -0.58 -28.75 16.69 11.22 0.19 -28.57 16 6 C -0.35 -10.73 5.72 -18.63 -0.11 -10.84 16 7 C 0.57 23.03 7.48 86.62 0.65 23.68 16 8 O -0.58 -31.69 15.31 12.74 0.19 -31.49 16 9 N -0.60 -20.29 2.89 -819.99 -2.37 -22.65 16 10 C 0.04 0.84 7.57 127.77 0.97 1.81 16 11 C 0.15 6.18 3.09 46.18 0.14 6.32 16 12 H 0.07 3.52 7.01 -2.39 -0.02 3.51 16 13 C 0.14 5.79 6.87 86.73 0.60 6.39 16 14 N -0.62 -31.41 3.39 -691.97 -2.35 -33.76 16 15 C -0.24 -12.76 10.27 84.03 0.86 -11.89 16 16 H 0.09 4.58 7.83 -2.91 -0.02 4.55 16 17 C -0.07 -3.61 5.49 84.86 0.47 -3.14 16 18 N -0.95 -55.34 10.09 21.65 0.22 -55.12 16 19 Si 0.99 44.03 29.55 68.60 2.03 46.06 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 23 C 0.14 6.95 5.62 86.85 0.49 7.44 16 24 C 0.08 3.40 3.99 31.99 0.13 3.53 16 25 H 0.09 3.11 6.35 -2.39 -0.02 3.09 16 26 O -0.58 -24.42 13.47 -148.98 -2.01 -26.43 16 27 C 0.20 2.87 7.80 84.25 0.66 3.53 16 28 N -0.46 -3.02 2.97 -532.77 -1.58 -4.61 16 29 C 0.03 -0.17 9.98 127.77 1.28 1.11 16 30 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.10 -0.05 7.97 -2.39 -0.02 -0.07 16 32 H 0.12 -0.84 6.01 -2.39 -0.01 -0.86 16 33 H 0.15 3.10 8.01 -2.91 -0.02 3.08 16 34 H 0.10 1.20 6.81 -2.39 -0.02 1.18 16 35 H 0.11 1.38 4.83 -2.39 -0.01 1.36 16 36 H 0.08 1.63 6.37 -2.39 -0.02 1.61 16 37 H 0.07 2.35 6.57 -2.39 -0.02 2.33 16 38 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.09 5.04 5.87 -2.39 -0.01 5.03 16 41 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H 0.39 12.90 9.11 -74.06 -0.67 12.23 16 43 H 0.23 1.53 4.20 -2.91 -0.01 1.52 16 44 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 45 H 0.12 -1.27 5.94 -2.39 -0.01 -1.28 16 46 H 0.12 -1.11 7.86 -2.39 -0.02 -1.13 16 Total: -1.00 -107.39 363.66 2.15 -105.24 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.37 Total: 12.98 kcal Atomic # 6 Polarization: 30.89 SS G_CDS: 7.45 Total: 38.34 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -6.08 Total: -116.14 kcal Atomic # 8 Polarization: -84.87 SS G_CDS: -1.63 Total: -86.49 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -107.39 2.15 -105.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047418284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.898 kcal (2) G-P(sol) polarization free energy of solvation -107.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds