Wall clock time and date at job start Tue Mar 31 2020 19:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30017 * 127.33538 * 2 1 4 4 O 1.20666 * 112.29712 * 180.27670 * 3 2 1 5 5 C 1.33491 * 113.15847 * 359.73139 * 4 3 2 6 6 C 1.50701 * 126.82763 * 180.02562 * 5 4 3 7 7 C 1.52991 * 117.49783 * 8.74896 * 6 5 4 8 8 C 1.52996 * 117.49910 * 300.08621 * 6 5 4 9 9 C 1.37361 * 106.34216 * 0.02562 * 5 4 3 10 10 C 1.47398 * 128.56706 * 179.97438 * 9 5 4 11 11 O 1.21602 * 120.00119 * 89.99503 * 10 9 5 12 12 N 1.34774 * 119.99772 * 270.00130 * 10 9 5 13 13 C 1.46499 * 120.00445 * 359.97438 * 12 10 9 14 14 C 1.46508 * 120.00131 * 179.97438 * 12 10 9 15 15 H 1.09001 * 110.63655 * 358.30909 * 14 12 10 16 16 C 1.54321 * 110.71884 * 121.45158 * 14 12 10 17 17 N 1.47027 * 107.26963 * 140.73605 * 16 14 12 18 18 C 1.36934 * 125.64999 * 181.01837 * 17 16 14 19 19 H 1.08001 * 119.99715 * 19.72556 * 18 17 16 20 20 C 1.38808 * 120.00167 * 199.71725 * 18 17 16 21 21 N 1.31615 * 119.99901 * 28.45315 * 20 18 17 22 22 Si 1.86798 * 119.99961 * 208.45051 * 20 18 17 23 23 H 1.48496 * 109.47178 * 180.02562 * 22 20 18 24 24 H 1.48506 * 109.47151 * 60.00278 * 22 20 18 25 25 H 1.48504 * 109.47376 * 300.00320 * 22 20 18 26 26 C 1.47424 * 108.70017 * 1.28604 * 17 16 14 27 27 C 1.55127 * 104.72584 * 335.55014 * 26 17 16 28 28 H 1.08997 * 111.19489 * 279.19793 * 27 26 17 29 29 O 1.42899 * 110.94305 * 155.28856 * 27 26 17 30 30 H 1.08999 * 109.46644 * 270.15114 * 1 2 3 31 31 H 1.09007 * 109.46607 * 30.14470 * 1 2 3 32 32 H 1.09001 * 109.47106 * 150.14632 * 1 2 3 33 33 H 1.09003 * 115.54552 * 154.42055 * 6 5 4 34 34 H 1.09002 * 117.50304 * 359.97438 * 7 6 5 35 35 H 1.09005 * 117.50131 * 145.02304 * 7 6 5 36 36 H 1.09003 * 117.49833 * 214.97869 * 8 6 5 37 37 H 1.08999 * 117.49799 * 359.97438 * 8 6 5 38 38 H 1.09006 * 109.47421 * 270.00234 * 13 12 10 39 39 H 1.09004 * 109.46945 * 29.99621 * 13 12 10 40 40 H 1.08999 * 109.47591 * 149.99916 * 13 12 10 41 41 H 1.08999 * 109.88249 * 21.31729 * 16 14 12 42 42 H 1.08996 * 109.88073 * 260.15039 * 16 14 12 43 43 H 0.97002 * 119.99894 * 5.65247 * 21 20 18 44 44 H 1.09004 * 110.37014 * 94.48414 * 26 17 16 45 45 H 1.09003 * 110.36481 * 216.80873 * 26 17 16 46 46 H 0.96697 * 113.99660 * 67.95475 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0338 0.0000 4 8 3.4609 0.7207 -0.0054 5 6 3.6495 -0.6008 -0.0042 6 6 4.9712 -1.3247 -0.0092 7 6 6.2360 -0.4873 0.1901 8 6 5.9122 -1.0691 -1.1882 9 6 2.3992 -1.1696 0.0024 10 6 2.0400 -2.5992 0.0057 11 8 1.8970 -3.1877 1.0602 12 7 1.8702 -3.2540 -1.1599 13 6 2.0421 -2.5450 -2.4303 14 6 1.5138 -4.6751 -1.1567 15 1 1.4546 -5.0540 -0.1364 16 6 0.1829 -4.9058 -1.9030 17 7 0.3242 -6.1504 -2.6728 18 6 -0.6303 -6.6971 -3.4884 19 1 -1.4363 -6.0835 -3.8630 20 6 -0.5618 -8.0398 -3.8339 21 7 0.0069 -8.9012 -3.0173 22 14 -1.2767 -8.6240 -5.4578 23 1 -1.0776 -10.0898 -5.5875 24 1 -0.5924 -7.9299 -6.5782 25 1 -2.7291 -8.3167 -5.4984 26 6 1.6613 -6.7157 -2.4161 27 6 2.5279 -5.5013 -1.9912 28 1 2.8699 -4.9381 -2.8595 29 8 3.6330 -5.9187 -1.1871 30 1 -0.3632 0.0027 1.0277 31 1 -0.3633 0.8888 -0.5161 32 1 -0.3633 -0.8913 -0.5116 33 1 4.9594 -2.3279 0.4170 34 1 6.1122 0.5873 0.3244 35 1 7.0566 -0.9396 0.7471 36 1 6.5198 -1.9040 -1.5374 37 1 5.5750 -0.3778 -1.9605 38 1 1.0879 -2.1190 -2.7407 39 1 2.7728 -1.7460 -2.3045 40 1 2.3934 -3.2421 -3.1910 41 1 -0.0129 -4.0726 -2.5779 42 1 -0.6320 -5.0040 -1.1858 43 1 0.3044 -8.6140 -2.1399 44 1 1.6146 -7.4510 -1.6128 45 1 2.0623 -7.1684 -3.3230 46 1 4.2933 -6.4385 -1.6655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047460094.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:13 Heat of formation + Delta-G solvation = 40.273191 kcal Electronic energy + Delta-G solvation = -30209.492798 eV Core-core repulsion = 26104.785441 eV Total energy + Delta-G solvation = -4104.707357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.07351 -40.04739 -38.09779 -37.69180 -35.43526 -35.05709 -34.67423 -32.29630 -31.68461 -29.03439 -28.60183 -27.70787 -26.84612 -25.01931 -24.01570 -23.71888 -22.79915 -20.99952 -20.62599 -19.80338 -19.14460 -18.05554 -17.82283 -17.63273 -17.22759 -16.59734 -16.21415 -15.94527 -15.04022 -14.80389 -14.24053 -14.15602 -13.81936 -13.64486 -13.58263 -13.56157 -13.32380 -13.11668 -13.00255 -12.57103 -12.35444 -12.31955 -12.23431 -11.97626 -11.77550 -11.69763 -11.43486 -11.36370 -10.82297 -10.80237 -10.67892 -10.26919 -10.25700 -10.08394 -10.00410 -9.83982 -9.46685 -9.35196 -8.58411 -8.48156 -7.06716 -6.20081 -3.28468 1.04133 1.71850 2.35954 2.54200 2.99743 3.41896 3.44667 3.47392 3.66055 3.82921 3.93268 4.28475 4.33677 4.44417 4.49852 4.53313 4.61723 4.98609 5.01205 5.08409 5.15545 5.21240 5.23377 5.26324 5.27434 5.33100 5.39507 5.43491 5.48361 5.51792 5.54719 5.63910 5.68732 5.72160 5.82677 5.85736 5.88133 6.31489 6.45894 6.64331 6.71168 6.84750 7.33799 7.66833 7.90134 8.01388 8.08612 8.37825 8.89134 9.69248 10.21685 11.11556 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.003206 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.930556 B = 8731.424385 C = 9491.166654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.057 3.943 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.046 3.954 6 C -0.093 4.093 7 C -0.161 4.161 8 C -0.156 4.156 9 C -0.232 4.232 10 C 0.600 3.400 11 O -0.522 6.522 12 N -0.588 5.588 13 C 0.078 3.922 14 C 0.138 3.862 15 H 0.115 0.885 16 C 0.129 3.871 17 N -0.595 5.595 18 C -0.343 4.343 19 H 0.067 0.933 20 C -0.022 4.022 21 N -0.910 5.910 22 Si 1.066 2.934 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.120 3.880 27 C 0.074 3.926 28 H 0.067 0.933 29 O -0.560 6.560 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.270 0.730 44 H 0.040 0.960 45 H 0.055 0.945 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.153 17.555 2.345 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.017 4.017 6 C -0.112 4.112 7 C -0.198 4.198 8 C -0.193 4.193 9 C -0.240 4.240 10 C 0.386 3.614 11 O -0.398 6.398 12 N -0.319 5.319 13 C -0.065 4.065 14 C 0.034 3.966 15 H 0.133 0.867 16 C 0.003 3.997 17 N -0.324 5.324 18 C -0.470 4.470 19 H 0.084 0.916 20 C -0.225 4.225 21 N -0.550 5.550 22 Si 0.895 3.105 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.219 1.219 26 C -0.007 4.007 27 C 0.013 3.987 28 H 0.085 0.915 29 O -0.364 6.364 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.159 0.841 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 10.282 17.520 2.318 20.446 hybrid contribution 0.198 0.279 0.565 0.661 sum 10.480 17.799 2.883 20.856 Atomic orbital electron populations 1.20248 0.85005 1.04260 1.04074 1.24740 0.98610 0.86375 1.00786 1.73619 0.89002 1.23162 1.20481 1.84488 1.21573 1.22332 1.68238 1.23489 0.95495 0.83389 0.99346 1.20542 0.83992 0.99685 1.07026 1.23100 0.96863 1.00217 0.99646 1.23137 1.00730 1.03855 0.91553 1.21801 0.92511 0.95342 1.14312 1.16866 0.76965 0.83765 0.83806 1.90826 1.50384 1.67773 1.30830 1.47658 1.68055 1.10474 1.05729 1.21774 1.01654 0.97227 0.85858 1.22187 0.94214 0.77943 1.02231 0.86722 1.21613 0.93190 0.91326 0.93574 1.44346 1.11355 1.24407 1.52273 1.19711 1.08124 0.94709 1.24463 0.91555 1.25840 1.00808 0.91194 1.04611 1.70790 1.40813 1.35067 1.08305 0.83512 0.75571 0.76074 0.75329 1.21011 1.22012 1.21871 1.22196 0.85719 0.93286 0.99466 1.23527 0.86551 0.96267 0.92327 0.91550 1.86484 1.34702 1.74834 1.40378 0.89504 0.89831 0.89641 0.84148 0.87657 0.87332 0.87143 0.88010 0.92176 0.91539 0.90184 0.94714 0.94817 0.91905 0.94247 0.92674 0.77780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.49 36.01 0.38 -0.43 16 2 C 0.06 0.73 7.59 -79.76 -0.61 0.13 16 3 N -0.36 -4.64 12.01 34.78 0.42 -4.22 16 4 O 0.10 1.15 10.86 18.66 0.20 1.35 16 5 C 0.05 0.55 6.70 -34.63 -0.23 0.31 16 6 C -0.09 -0.89 6.14 -91.78 -0.56 -1.45 16 7 C -0.16 -1.11 10.19 -26.70 -0.27 -1.38 16 8 C -0.16 -1.10 10.24 -26.70 -0.27 -1.37 16 9 C -0.23 -3.20 4.47 -102.89 -0.46 -3.66 16 10 C 0.60 9.78 7.49 -12.53 -0.09 9.69 16 11 O -0.52 -10.47 16.48 5.28 0.09 -10.38 16 12 N -0.59 -9.05 2.89 -173.10 -0.50 -9.55 16 13 C 0.08 0.96 9.15 59.85 0.55 1.50 16 14 C 0.14 2.53 3.08 -66.09 -0.20 2.32 16 15 H 0.11 2.40 6.99 -51.93 -0.36 2.03 16 16 C 0.13 2.67 6.88 -3.06 -0.02 2.65 16 17 N -0.60 -14.57 3.26 -169.93 -0.55 -15.12 16 18 C -0.34 -9.36 10.00 -15.06 -0.15 -9.51 16 19 H 0.07 1.81 7.97 -52.49 -0.42 1.39 16 20 C -0.02 -0.60 5.10 -17.43 -0.09 -0.69 16 21 N -0.91 -26.85 13.01 55.49 0.72 -26.13 16 22 Si 1.07 24.50 30.00 -169.99 -5.10 19.40 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 26 C 0.12 2.67 5.12 -2.41 -0.01 2.65 16 27 C 0.07 1.30 3.97 -24.46 -0.10 1.21 16 28 H 0.07 1.07 6.11 -51.93 -0.32 0.75 16 29 O -0.56 -9.16 13.47 -35.23 -0.47 -9.63 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.14 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.11 0.70 8.02 -51.93 -0.42 0.28 16 35 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.70 7.89 -51.93 -0.41 0.29 16 39 H 0.07 0.72 6.65 -51.93 -0.35 0.37 16 40 H 0.08 0.98 6.09 -51.93 -0.32 0.66 16 41 H 0.04 0.68 6.94 -51.93 -0.36 0.32 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.27 8.05 6.19 -40.82 -0.25 7.80 16 44 H 0.04 0.97 6.81 -51.93 -0.35 0.62 16 45 H 0.05 1.29 8.08 -51.93 -0.42 0.87 16 46 H 0.38 4.47 9.12 45.56 0.42 4.89 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -34.07 381.90 -7.33 -41.40 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.73 Total: 5.16 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.15 Total: 1.96 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.09 Total: -55.02 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.19 Total: -18.66 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.10 Total: 19.40 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.07 -7.33 -41.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047460094.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.673 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds