Wall clock time and date at job start Tue Mar 31 2020 19:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30017 * 127.33538 * 2 1 4 4 O 1.20666 * 112.29712 * 180.27670 * 3 2 1 5 5 C 1.33491 * 113.15847 * 359.73139 * 4 3 2 6 6 C 1.50701 * 126.82763 * 180.02562 * 5 4 3 7 7 C 1.52991 * 117.49783 * 8.74896 * 6 5 4 8 8 C 1.52996 * 117.49910 * 300.08621 * 6 5 4 9 9 C 1.37361 * 106.34216 * 0.02562 * 5 4 3 10 10 C 1.47398 * 128.56706 * 179.97438 * 9 5 4 11 11 O 1.21602 * 120.00119 * 89.99503 * 10 9 5 12 12 N 1.34774 * 119.99772 * 270.00130 * 10 9 5 13 13 C 1.46499 * 120.00445 * 359.97438 * 12 10 9 14 14 C 1.46508 * 120.00131 * 179.97438 * 12 10 9 15 15 H 1.09001 * 110.63655 * 358.30909 * 14 12 10 16 16 C 1.54321 * 110.71884 * 121.45158 * 14 12 10 17 17 N 1.47027 * 107.26963 * 140.73605 * 16 14 12 18 18 C 1.36934 * 125.64999 * 181.01837 * 17 16 14 19 19 H 1.08001 * 119.99715 * 19.72556 * 18 17 16 20 20 C 1.38808 * 120.00167 * 199.71725 * 18 17 16 21 21 N 1.31615 * 119.99901 * 28.45315 * 20 18 17 22 22 Si 1.86798 * 119.99961 * 208.45051 * 20 18 17 23 23 H 1.48496 * 109.47178 * 180.02562 * 22 20 18 24 24 H 1.48506 * 109.47151 * 60.00278 * 22 20 18 25 25 H 1.48504 * 109.47376 * 300.00320 * 22 20 18 26 26 C 1.47424 * 108.70017 * 1.28604 * 17 16 14 27 27 C 1.55127 * 104.72584 * 335.55014 * 26 17 16 28 28 H 1.08997 * 111.19489 * 279.19793 * 27 26 17 29 29 O 1.42899 * 110.94305 * 155.28856 * 27 26 17 30 30 H 1.08999 * 109.46644 * 270.15114 * 1 2 3 31 31 H 1.09007 * 109.46607 * 30.14470 * 1 2 3 32 32 H 1.09001 * 109.47106 * 150.14632 * 1 2 3 33 33 H 1.09003 * 115.54552 * 154.42055 * 6 5 4 34 34 H 1.09002 * 117.50304 * 359.97438 * 7 6 5 35 35 H 1.09005 * 117.50131 * 145.02304 * 7 6 5 36 36 H 1.09003 * 117.49833 * 214.97869 * 8 6 5 37 37 H 1.08999 * 117.49799 * 359.97438 * 8 6 5 38 38 H 1.09006 * 109.47421 * 270.00234 * 13 12 10 39 39 H 1.09004 * 109.46945 * 29.99621 * 13 12 10 40 40 H 1.08999 * 109.47591 * 149.99916 * 13 12 10 41 41 H 1.08999 * 109.88249 * 21.31729 * 16 14 12 42 42 H 1.08996 * 109.88073 * 260.15039 * 16 14 12 43 43 H 0.97002 * 119.99894 * 5.65247 * 21 20 18 44 44 H 1.09004 * 110.37014 * 94.48414 * 26 17 16 45 45 H 1.09003 * 110.36481 * 216.80873 * 26 17 16 46 46 H 0.96697 * 113.99660 * 67.95475 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0338 0.0000 4 8 3.4609 0.7207 -0.0054 5 6 3.6495 -0.6008 -0.0042 6 6 4.9712 -1.3247 -0.0092 7 6 6.2360 -0.4873 0.1901 8 6 5.9122 -1.0691 -1.1882 9 6 2.3992 -1.1696 0.0024 10 6 2.0400 -2.5992 0.0057 11 8 1.8970 -3.1877 1.0602 12 7 1.8702 -3.2540 -1.1599 13 6 2.0421 -2.5450 -2.4303 14 6 1.5138 -4.6751 -1.1567 15 1 1.4546 -5.0540 -0.1364 16 6 0.1829 -4.9058 -1.9030 17 7 0.3242 -6.1504 -2.6728 18 6 -0.6303 -6.6971 -3.4884 19 1 -1.4363 -6.0835 -3.8630 20 6 -0.5618 -8.0398 -3.8339 21 7 0.0069 -8.9012 -3.0173 22 14 -1.2767 -8.6240 -5.4578 23 1 -1.0776 -10.0898 -5.5875 24 1 -0.5924 -7.9299 -6.5782 25 1 -2.7291 -8.3167 -5.4984 26 6 1.6613 -6.7157 -2.4161 27 6 2.5279 -5.5013 -1.9912 28 1 2.8699 -4.9381 -2.8595 29 8 3.6330 -5.9187 -1.1871 30 1 -0.3632 0.0027 1.0277 31 1 -0.3633 0.8888 -0.5161 32 1 -0.3633 -0.8913 -0.5116 33 1 4.9594 -2.3279 0.4170 34 1 6.1122 0.5873 0.3244 35 1 7.0566 -0.9396 0.7471 36 1 6.5198 -1.9040 -1.5374 37 1 5.5750 -0.3778 -1.9605 38 1 1.0879 -2.1190 -2.7407 39 1 2.7728 -1.7460 -2.3045 40 1 2.3934 -3.2421 -3.1910 41 1 -0.0129 -4.0726 -2.5779 42 1 -0.6320 -5.0040 -1.1858 43 1 0.3044 -8.6140 -2.1399 44 1 1.6146 -7.4510 -1.6128 45 1 2.0623 -7.1684 -3.3230 46 1 4.2933 -6.4385 -1.6655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047460094.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:12 Heat of formation + Delta-G solvation = 16.641990 kcal Electronic energy + Delta-G solvation = -30210.517524 eV Core-core repulsion = 26104.785441 eV Total energy + Delta-G solvation = -4105.732083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.04075 -41.42418 -39.60923 -38.37084 -36.91035 -36.56431 -35.69373 -34.01053 -32.81921 -30.39183 -29.84929 -29.32181 -28.02980 -26.56566 -25.44725 -24.59989 -23.33037 -22.47920 -22.26983 -20.86571 -20.34853 -19.64508 -19.19552 -18.81961 -18.45206 -17.62930 -17.48512 -16.99724 -16.41464 -16.01739 -15.89909 -15.57494 -15.40808 -15.14344 -14.70798 -14.44951 -14.38421 -14.34436 -14.08874 -13.97271 -13.86060 -13.52692 -13.26803 -13.11884 -13.07219 -12.64037 -12.55072 -12.52911 -12.43462 -12.21761 -11.89429 -11.83901 -11.74211 -11.50237 -11.46056 -11.05825 -11.01741 -10.56191 -10.26035 -9.89446 -9.11005 -8.37127 -5.43258 0.10679 0.72955 1.11719 1.48267 1.60167 1.66965 1.86115 1.87922 2.60617 2.78212 2.88328 2.93742 3.06865 3.16234 3.40005 3.49784 3.56424 3.64165 3.78181 3.82747 3.91319 3.96166 4.08250 4.10527 4.22149 4.30576 4.39816 4.44470 4.47445 4.49551 4.63382 4.69406 4.71946 4.74943 4.83149 4.88083 4.90718 5.00302 5.03072 5.04218 5.19934 5.26655 5.62752 6.08513 6.23994 6.73225 6.78485 6.82530 7.06429 7.61845 8.17258 8.92908 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.003206 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.930556 B = 8731.424385 C = 9491.166654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.057 3.943 3 N -0.367 5.367 4 O 0.098 5.902 5 C 0.068 3.932 6 C -0.123 4.123 7 C -0.146 4.146 8 C -0.139 4.139 9 C -0.262 4.262 10 C 0.606 3.394 11 O -0.569 6.569 12 N -0.581 5.581 13 C 0.074 3.926 14 C 0.149 3.851 15 H 0.085 0.915 16 C 0.132 3.868 17 N -0.614 5.614 18 C -0.351 4.351 19 H 0.066 0.934 20 C -0.073 4.073 21 N -0.939 5.939 22 Si 1.119 2.881 23 H -0.293 1.293 24 H -0.274 1.274 25 H -0.276 1.276 26 C 0.125 3.875 27 C 0.099 3.901 28 H 0.096 0.904 29 O -0.565 6.565 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.055 0.945 42 H 0.014 0.986 43 H 0.253 0.747 44 H 0.007 0.993 45 H 0.040 0.960 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.539 19.709 0.619 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 N -0.075 5.075 4 O 0.038 5.962 5 C 0.004 3.996 6 C -0.142 4.142 7 C -0.183 4.183 8 C -0.176 4.176 9 C -0.269 4.269 10 C 0.394 3.606 11 O -0.448 6.448 12 N -0.311 5.311 13 C -0.067 4.067 14 C 0.045 3.955 15 H 0.103 0.897 16 C 0.006 3.994 17 N -0.342 5.342 18 C -0.479 4.479 19 H 0.083 0.917 20 C -0.270 4.270 21 N -0.581 5.581 22 Si 0.943 3.057 23 H -0.219 1.219 24 H -0.199 1.199 25 H -0.201 1.201 26 C -0.001 4.001 27 C 0.038 3.962 28 H 0.113 0.887 29 O -0.373 6.373 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.145 0.855 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.058 0.942 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 11.698 19.727 0.571 22.942 hybrid contribution -0.192 -0.346 1.178 1.242 sum 11.506 19.381 1.748 22.607 Atomic orbital electron populations 1.20354 0.83661 1.05042 1.04641 1.25059 0.99544 0.85854 1.00065 1.73610 0.89267 1.23264 1.21357 1.84482 1.21316 1.22252 1.68101 1.23849 0.95862 0.83151 0.96721 1.20614 0.83994 0.99472 1.10144 1.23241 0.95246 1.00181 0.99645 1.23272 0.98858 1.04174 0.91283 1.21543 0.93808 0.94013 1.17522 1.17126 0.75804 0.84570 0.83108 1.90799 1.52459 1.69045 1.32500 1.47607 1.67383 1.09184 1.06964 1.22001 1.02952 0.97605 0.84160 1.21725 0.93515 0.80076 1.00228 0.89730 1.21644 0.94005 0.90429 0.93321 1.44580 1.11898 1.25208 1.52539 1.20010 1.08589 0.94912 1.24395 0.91664 1.27285 1.01013 0.91655 1.07018 1.70919 1.43299 1.35666 1.08183 0.82816 0.75939 0.75116 0.71877 1.21949 1.19944 1.20138 1.22094 0.85870 0.94558 0.97616 1.23211 0.86169 0.93869 0.92902 0.88669 1.86459 1.34639 1.75251 1.40931 0.89039 0.87889 0.89948 0.85525 0.87183 0.85725 0.85728 0.87316 0.91147 0.89573 0.89540 0.92667 0.96800 0.93680 0.97535 0.94182 0.75274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.49 71.24 0.75 -0.80 16 2 C 0.06 1.39 7.59 45.16 0.34 1.73 16 3 N -0.37 -8.97 12.01 -44.77 -0.54 -9.51 16 4 O 0.10 2.19 10.86 77.00 0.84 3.03 16 5 C 0.07 1.50 6.70 25.48 0.17 1.67 16 6 C -0.12 -2.11 6.14 -11.54 -0.07 -2.18 16 7 C -0.15 -1.59 10.19 30.62 0.31 -1.28 16 8 C -0.14 -1.50 10.24 30.62 0.31 -1.19 16 9 C -0.26 -6.96 4.47 -18.74 -0.08 -7.04 16 10 C 0.61 19.70 7.49 86.66 0.65 20.35 16 11 O -0.57 -23.50 16.48 -4.04 -0.07 -23.57 16 12 N -0.58 -17.39 2.89 -819.84 -2.37 -19.76 16 13 C 0.07 1.64 9.15 127.77 1.17 2.81 16 14 C 0.15 5.51 3.08 46.18 0.14 5.66 16 15 H 0.08 3.69 6.99 -2.39 -0.02 3.67 16 16 C 0.13 5.50 6.88 86.73 0.60 6.10 16 17 N -0.61 -30.51 3.26 -691.55 -2.26 -32.77 16 18 C -0.35 -19.34 10.00 84.03 0.84 -18.50 16 19 H 0.07 3.54 7.97 -2.91 -0.02 3.52 16 20 C -0.07 -4.09 5.10 84.86 0.43 -3.66 16 21 N -0.94 -56.96 13.01 21.65 0.28 -56.67 16 22 Si 1.12 49.26 30.00 68.60 2.06 51.31 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 26 C 0.13 5.70 5.12 86.93 0.45 6.14 16 27 C 0.10 3.43 3.97 32.06 0.13 3.56 16 28 H 0.10 2.81 6.11 -2.39 -0.01 2.79 16 29 O -0.57 -17.95 13.47 -148.98 -2.01 -19.96 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.11 1.13 8.02 -2.39 -0.02 1.11 16 35 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.44 7.89 -2.38 -0.02 1.43 16 39 H 0.09 1.59 6.65 -2.38 -0.02 1.58 16 40 H 0.09 1.82 6.09 -2.39 -0.01 1.81 16 41 H 0.06 2.09 6.94 -2.39 -0.02 2.07 16 42 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.25 15.83 6.19 -92.71 -0.57 15.26 16 44 H 0.01 0.36 6.81 -2.39 -0.02 0.34 16 45 H 0.04 1.91 8.08 -2.39 -0.02 1.89 16 46 H 0.40 8.79 9.12 -74.06 -0.68 8.12 16 Total: -1.00 -76.12 381.90 2.62 -73.50 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.54 Total: 21.02 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 6.13 Total: 13.37 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -4.88 Total: -118.71 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.24 Total: -40.50 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.06 Total: 51.31 kcal Total: -76.12 2.62 -73.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047460094.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.140 kcal (2) G-P(sol) polarization free energy of solvation -76.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds