Wall clock time and date at job start Tue Mar 31 2020 19:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41382 * 126.80016 * 2 1 4 4 C 1.35452 * 103.98200 * 180.09961 * 3 2 1 5 5 C 1.50703 * 126.77483 * 179.90956 * 4 3 2 6 6 C 1.50694 * 115.55284 * 304.72911 * 5 4 3 7 7 O 1.21280 * 119.99936 * 92.79458 * 6 5 4 8 8 N 1.34774 * 120.00002 * 272.80090 * 6 5 4 9 9 C 1.46491 * 120.00263 * 5.09690 * 8 6 5 10 10 C 1.46504 * 119.99852 * 185.09849 * 8 6 5 11 11 H 1.09003 * 110.64351 * 3.13816 * 10 8 6 12 12 C 1.54323 * 110.72068 * 126.47578 * 10 8 6 13 13 N 1.47030 * 107.26868 * 140.55526 * 12 10 8 14 14 C 1.36933 * 125.64317 * 181.02292 * 13 12 10 15 15 H 1.07997 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.38820 * 119.99929 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99537 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00062 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47489 * 60.00368 * 18 16 14 20 20 H 1.48503 * 109.47148 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47322 * 299.99908 * 18 16 14 22 22 C 1.47419 * 108.70352 * 1.05895 * 13 12 10 23 23 C 1.54915 * 104.83465 * 335.87178 * 22 13 12 24 24 H 1.09002 * 111.00171 * 278.93668 * 23 22 13 25 25 O 1.42903 * 111.00360 * 155.08445 * 23 22 13 26 26 C 1.53000 * 117.51555 * 90.43124 * 5 4 3 27 27 C 1.52997 * 60.00003 * 107.48118 * 26 5 4 28 28 O 1.34036 * 106.45031 * 359.64909 * 4 3 2 29 29 N 1.20928 * 111.56363 * 0.23650 * 28 4 3 30 30 H 1.09003 * 109.46524 * 270.28722 * 1 2 3 31 31 H 1.09001 * 109.47404 * 30.28088 * 1 2 3 32 32 H 1.08994 * 109.47594 * 150.29097 * 1 2 3 33 33 H 1.07996 * 128.00787 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.47208 * 275.21600 * 9 8 6 35 35 H 1.08996 * 109.47845 * 155.21163 * 9 8 6 36 36 H 1.08999 * 109.47166 * 35.21304 * 9 8 6 37 37 H 1.08998 * 109.88141 * 259.97063 * 12 10 8 38 38 H 1.08994 * 109.88075 * 21.13873 * 12 10 8 39 39 H 0.96998 * 120.00152 * 179.97438 * 17 16 14 40 40 H 1.09001 * 110.36452 * 217.03098 * 22 13 12 41 41 H 1.09001 * 110.36907 * 94.71409 * 22 13 12 42 42 H 0.96696 * 113.99909 * 67.80390 * 25 23 22 43 43 H 1.09001 * 117.49670 * 214.96763 * 26 5 4 44 44 H 1.09003 * 117.50227 * 359.97438 * 26 5 4 45 45 H 1.09005 * 117.49855 * 252.50569 * 27 26 5 46 46 H 1.09000 * 117.50296 * 107.48834 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 -0.0023 5 6 4.9021 1.3696 -0.0052 6 6 5.0685 2.3661 -1.1233 7 8 4.7465 3.5235 -0.9569 8 7 5.5750 1.9712 -2.3082 9 6 5.8594 0.5542 -2.5475 10 6 5.8411 2.9590 -3.3568 11 1 5.6275 3.9662 -2.9991 12 6 7.2982 2.8492 -3.8532 13 7 7.2783 3.0402 -5.3109 14 6 8.3699 2.9964 -6.1365 15 1 9.3506 2.8079 -5.7254 16 6 8.2160 3.1944 -7.5018 17 7 7.0208 3.4247 -8.0027 18 14 9.7050 3.1341 -8.6280 19 1 10.3465 1.7985 -8.5294 20 1 9.2760 3.3754 -10.0291 21 1 10.6763 4.1811 -8.2210 22 6 5.8886 3.2873 -5.7364 23 6 5.0149 2.6425 -4.6315 24 1 4.9257 1.5666 -4.7821 25 8 3.7266 3.2580 -4.5728 26 6 5.5196 1.7191 1.3503 27 6 6.1539 0.6342 0.4777 28 8 3.4538 -0.7253 0.0044 29 7 2.2868 -1.0423 0.0056 30 1 -0.3632 0.0052 1.0277 31 1 -0.3634 0.8874 -0.5182 32 1 -0.3634 -0.8925 -0.5093 33 1 2.0709 2.1743 0.0004 34 1 6.8482 0.3113 -2.1585 35 1 5.8309 0.3536 -3.6185 36 1 5.1106 -0.0569 -2.0435 37 1 7.9081 3.6226 -3.3864 38 1 7.6981 1.8640 -3.6138 39 1 6.9132 3.5634 -8.9566 40 1 5.6960 2.8117 -6.6981 41 1 5.6950 4.3583 -5.7964 42 1 3.1740 3.0883 -5.3480 43 1 6.0462 2.6698 1.4333 44 1 4.9856 1.3977 2.2446 45 1 6.0373 -0.4013 0.7978 46 1 7.0977 0.8711 -0.0134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047501400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:17 Heat of formation + Delta-G solvation = 49.860064 kcal Electronic energy + Delta-G solvation = -30138.470031 eV Core-core repulsion = 26034.178392 eV Total energy + Delta-G solvation = -4104.291639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.11447 -40.42558 -38.25646 -36.74959 -35.25723 -34.96262 -34.76890 -31.93045 -31.67317 -28.90236 -28.78039 -27.40232 -26.80958 -25.19612 -24.08544 -23.45421 -22.66267 -21.34699 -20.50946 -19.69065 -18.88194 -17.86520 -17.74338 -17.13674 -17.09866 -16.46314 -15.89654 -15.62546 -14.96773 -14.64378 -14.41426 -13.98358 -13.87412 -13.60682 -13.55224 -13.30519 -13.18107 -13.02876 -12.86596 -12.58379 -12.40167 -12.16367 -11.87158 -11.81873 -11.62863 -11.53980 -11.30356 -11.20222 -10.99486 -10.91255 -10.85414 -10.24957 -10.17707 -9.99168 -9.91450 -9.76785 -9.43457 -9.23970 -8.76094 -8.42687 -6.98178 -5.76157 -3.19931 1.19897 2.03232 2.27077 2.75437 3.15727 3.33529 3.35079 3.39544 3.40696 3.99002 4.07499 4.25114 4.39198 4.49719 4.54582 4.64471 4.84953 5.03174 5.17642 5.22162 5.25027 5.27130 5.29858 5.33257 5.37610 5.46364 5.51715 5.55917 5.58677 5.62178 5.63159 5.75470 5.82192 5.87960 5.92843 6.04879 6.10827 6.42097 6.52328 6.82026 7.29839 7.43394 7.49601 7.68028 8.06344 8.12064 8.16904 8.23790 9.08443 9.69105 10.31203 11.27424 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.003038 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.347439 B = 9213.796495 C = 9747.250997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.017 3.983 3 C -0.208 4.208 4 C 0.011 3.989 5 C -0.087 4.087 6 C 0.560 3.440 7 O -0.523 6.523 8 N -0.590 5.590 9 C 0.076 3.924 10 C 0.136 3.864 11 H 0.112 0.888 12 C 0.132 3.868 13 N -0.598 5.598 14 C -0.226 4.226 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.922 5.922 18 Si 0.918 3.082 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.129 3.871 23 C 0.064 3.936 24 H 0.059 0.941 25 O -0.562 6.562 26 C -0.124 4.124 27 C -0.151 4.151 28 O 0.102 5.898 29 N -0.364 5.364 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.174 0.826 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.254 0.746 40 H 0.112 0.888 41 H 0.025 0.975 42 H 0.374 0.626 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 -7.835 16.889 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.141 4.141 3 C -0.229 4.229 4 C -0.052 4.052 5 C -0.092 4.092 6 C 0.345 3.655 7 O -0.398 6.398 8 N -0.321 5.321 9 C -0.067 4.067 10 C 0.032 3.968 11 H 0.130 0.870 12 C 0.005 3.995 13 N -0.326 5.326 14 C -0.354 4.354 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.570 5.570 18 Si 0.748 3.252 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.003 3.997 23 C 0.003 3.997 24 H 0.077 0.923 25 O -0.367 6.367 26 C -0.162 4.162 27 C -0.188 4.188 28 O 0.035 5.965 29 N -0.069 5.069 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.191 0.809 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.129 0.871 41 H 0.043 0.957 42 H 0.221 0.779 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.132 0.868 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.270 -8.306 17.313 20.907 hybrid contribution 0.421 0.576 -1.264 1.452 sum -7.849 -7.730 16.048 19.466 Atomic orbital electron populations 1.20174 0.85777 1.03988 1.03341 1.23597 0.99128 0.88653 1.02729 1.22444 0.90835 1.01450 1.08193 1.22724 0.95436 0.83451 1.03633 1.19283 0.90360 1.00905 0.98658 1.18911 0.77412 0.87366 0.81842 1.90716 1.49037 1.18861 1.81192 1.47716 1.62632 1.08433 1.13330 1.21830 1.00926 0.80546 1.03380 1.22227 0.95377 0.93239 0.85911 0.86982 1.21527 0.92108 0.98899 0.86987 1.44257 1.04089 1.84345 0.99923 1.19032 0.86400 1.42053 0.87937 0.90210 1.24812 0.97183 1.01661 0.96767 1.69739 1.20155 1.55073 1.12072 0.86102 0.81404 0.77913 0.79761 1.21051 1.21508 1.21089 1.22561 0.82260 0.98062 0.96777 1.23747 0.83397 0.95849 0.96662 0.92300 1.86450 1.27205 1.77014 1.45989 1.23173 1.00725 1.01013 0.91290 1.23285 0.94966 0.98697 1.01845 1.84805 1.21729 1.22185 1.67750 1.73844 0.89172 1.23837 1.20024 0.90154 0.89810 0.90496 0.80867 0.91920 0.90023 0.91688 0.94988 0.94801 0.93488 0.87068 0.95666 0.77933 0.86753 0.87372 0.86843 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.47 36.00 0.38 -0.23 16 2 C 0.02 0.20 7.33 -82.10 -0.60 -0.40 16 3 C -0.21 -2.55 10.99 -39.38 -0.43 -2.98 16 4 C 0.01 0.14 5.75 -35.30 -0.20 -0.07 16 5 C -0.09 -1.02 1.30 -156.81 -0.20 -1.23 16 6 C 0.56 8.72 6.75 -10.99 -0.07 8.64 16 7 O -0.52 -9.96 16.46 5.56 0.09 -9.87 16 8 N -0.59 -9.24 2.89 -171.84 -0.50 -9.73 16 9 C 0.08 0.97 7.83 59.84 0.47 1.44 16 10 C 0.14 2.56 3.08 -66.09 -0.20 2.36 16 11 H 0.11 2.37 7.02 -51.93 -0.36 2.01 16 12 C 0.13 2.68 6.87 -3.06 -0.02 2.66 16 13 N -0.60 -14.79 3.39 -170.07 -0.58 -15.37 16 14 C -0.23 -6.07 10.27 -15.06 -0.15 -6.22 16 15 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 17 N -0.92 -25.95 10.09 55.49 0.56 -25.39 16 18 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 C 0.13 3.06 5.62 -2.53 -0.01 3.05 16 23 C 0.06 1.25 3.95 -24.58 -0.10 1.15 16 24 H 0.06 1.10 6.46 -51.93 -0.34 0.77 16 25 O -0.56 -10.49 13.47 -35.23 -0.47 -10.97 16 26 C -0.12 -1.13 9.92 -26.73 -0.27 -1.40 16 27 C -0.15 -1.30 8.63 -26.73 -0.23 -1.53 16 28 O 0.10 1.28 11.15 17.19 0.19 1.47 16 29 N -0.36 -4.79 12.07 33.42 0.40 -4.38 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.17 2.04 8.06 -52.49 -0.42 1.61 16 34 H 0.06 0.68 7.35 -51.93 -0.38 0.29 16 35 H 0.08 1.13 6.47 -51.93 -0.34 0.79 16 36 H 0.06 0.76 6.53 -51.93 -0.34 0.42 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.65 6.83 -51.93 -0.35 0.29 16 39 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.11 2.90 5.88 -51.93 -0.31 2.59 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.37 5.43 9.12 45.56 0.42 5.84 16 43 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.11 0.93 7.63 -51.93 -0.40 0.54 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -33.04 377.25 -7.14 -40.18 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.75 Total: 7.09 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -1.75 Total: 4.92 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.11 Total: -54.88 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.19 Total: -19.37 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.04 -7.14 -40.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047501400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.037 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds