Wall clock time and date at job start Tue Mar 31 2020 19:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41382 * 126.80016 * 2 1 4 4 C 1.35452 * 103.98200 * 180.09961 * 3 2 1 5 5 C 1.50703 * 126.77483 * 179.90956 * 4 3 2 6 6 C 1.50694 * 115.55284 * 304.72911 * 5 4 3 7 7 O 1.21280 * 119.99936 * 92.79458 * 6 5 4 8 8 N 1.34774 * 120.00002 * 272.80090 * 6 5 4 9 9 C 1.46491 * 120.00263 * 5.09690 * 8 6 5 10 10 C 1.46504 * 119.99852 * 185.09849 * 8 6 5 11 11 H 1.09003 * 110.64351 * 3.13816 * 10 8 6 12 12 C 1.54323 * 110.72068 * 126.47578 * 10 8 6 13 13 N 1.47030 * 107.26868 * 140.55526 * 12 10 8 14 14 C 1.36933 * 125.64317 * 181.02292 * 13 12 10 15 15 H 1.07997 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.38820 * 119.99929 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99537 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00062 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47489 * 60.00368 * 18 16 14 20 20 H 1.48503 * 109.47148 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47322 * 299.99908 * 18 16 14 22 22 C 1.47419 * 108.70352 * 1.05895 * 13 12 10 23 23 C 1.54915 * 104.83465 * 335.87178 * 22 13 12 24 24 H 1.09002 * 111.00171 * 278.93668 * 23 22 13 25 25 O 1.42903 * 111.00360 * 155.08445 * 23 22 13 26 26 C 1.53000 * 117.51555 * 90.43124 * 5 4 3 27 27 C 1.52997 * 60.00003 * 107.48118 * 26 5 4 28 28 O 1.34036 * 106.45031 * 359.64909 * 4 3 2 29 29 N 1.20928 * 111.56363 * 0.23650 * 28 4 3 30 30 H 1.09003 * 109.46524 * 270.28722 * 1 2 3 31 31 H 1.09001 * 109.47404 * 30.28088 * 1 2 3 32 32 H 1.08994 * 109.47594 * 150.29097 * 1 2 3 33 33 H 1.07996 * 128.00787 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.47208 * 275.21600 * 9 8 6 35 35 H 1.08996 * 109.47845 * 155.21163 * 9 8 6 36 36 H 1.08999 * 109.47166 * 35.21304 * 9 8 6 37 37 H 1.08998 * 109.88141 * 259.97063 * 12 10 8 38 38 H 1.08994 * 109.88075 * 21.13873 * 12 10 8 39 39 H 0.96998 * 120.00152 * 179.97438 * 17 16 14 40 40 H 1.09001 * 110.36452 * 217.03098 * 22 13 12 41 41 H 1.09001 * 110.36907 * 94.71409 * 22 13 12 42 42 H 0.96696 * 113.99909 * 67.80390 * 25 23 22 43 43 H 1.09001 * 117.49670 * 214.96763 * 26 5 4 44 44 H 1.09003 * 117.50227 * 359.97438 * 26 5 4 45 45 H 1.09005 * 117.49855 * 252.50569 * 27 26 5 46 46 H 1.09000 * 117.50296 * 107.48834 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 -0.0023 5 6 4.9021 1.3696 -0.0052 6 6 5.0685 2.3661 -1.1233 7 8 4.7465 3.5235 -0.9569 8 7 5.5750 1.9712 -2.3082 9 6 5.8594 0.5542 -2.5475 10 6 5.8411 2.9590 -3.3568 11 1 5.6275 3.9662 -2.9991 12 6 7.2982 2.8492 -3.8532 13 7 7.2783 3.0402 -5.3109 14 6 8.3699 2.9964 -6.1365 15 1 9.3506 2.8079 -5.7254 16 6 8.2160 3.1944 -7.5018 17 7 7.0208 3.4247 -8.0027 18 14 9.7050 3.1341 -8.6280 19 1 10.3465 1.7985 -8.5294 20 1 9.2760 3.3754 -10.0291 21 1 10.6763 4.1811 -8.2210 22 6 5.8886 3.2873 -5.7364 23 6 5.0149 2.6425 -4.6315 24 1 4.9257 1.5666 -4.7821 25 8 3.7266 3.2580 -4.5728 26 6 5.5196 1.7191 1.3503 27 6 6.1539 0.6342 0.4777 28 8 3.4538 -0.7253 0.0044 29 7 2.2868 -1.0423 0.0056 30 1 -0.3632 0.0052 1.0277 31 1 -0.3634 0.8874 -0.5182 32 1 -0.3634 -0.8925 -0.5093 33 1 2.0709 2.1743 0.0004 34 1 6.8482 0.3113 -2.1585 35 1 5.8309 0.3536 -3.6185 36 1 5.1106 -0.0569 -2.0435 37 1 7.9081 3.6226 -3.3864 38 1 7.6981 1.8640 -3.6138 39 1 6.9132 3.5634 -8.9566 40 1 5.6960 2.8117 -6.6981 41 1 5.6950 4.3583 -5.7964 42 1 3.1740 3.0883 -5.3480 43 1 6.0462 2.6698 1.4333 44 1 4.9856 1.3977 2.2446 45 1 6.0373 -0.4013 0.7978 46 1 7.0977 0.8711 -0.0134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047501400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:17 Heat of formation + Delta-G solvation = 26.862365 kcal Electronic energy + Delta-G solvation = -30139.467286 eV Core-core repulsion = 26034.178392 eV Total energy + Delta-G solvation = -4105.288895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.02417 -41.64303 -39.73981 -37.80601 -36.78045 -36.35730 -35.80532 -33.80907 -32.55643 -30.53612 -29.63059 -29.08740 -27.98754 -26.72469 -25.46324 -24.35677 -23.44209 -22.50542 -22.33418 -20.95987 -20.02764 -19.04221 -18.99098 -18.68886 -18.40131 -17.60248 -17.34272 -16.81775 -16.57201 -15.78584 -15.72663 -15.46381 -15.14593 -14.85232 -14.67278 -14.29381 -14.23888 -14.21766 -13.98128 -13.88658 -13.58751 -13.42709 -13.35917 -13.17485 -13.07383 -12.78018 -12.67644 -12.55100 -12.43083 -12.10731 -11.97852 -11.92080 -11.85325 -11.51372 -11.09037 -11.02049 -10.92183 -10.76034 -10.32008 -9.76756 -8.97539 -7.80559 -5.27580 0.27667 1.12165 1.20894 1.48780 1.51891 1.57573 1.62504 2.08865 2.47838 2.53670 3.04136 3.18209 3.24514 3.30944 3.34097 3.64946 3.66342 3.78758 3.79846 3.95205 4.02997 4.08260 4.20704 4.22432 4.38589 4.46743 4.49718 4.56601 4.61320 4.65861 4.66307 4.79252 4.80250 4.83885 4.85960 4.91672 4.96361 5.11161 5.18859 5.34538 5.39359 5.45798 5.66329 6.19576 6.23510 6.78866 6.94798 7.03813 7.16653 7.69282 8.31618 9.21025 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.003038 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.347439 B = 9213.796495 C = 9747.250997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.017 3.983 3 C -0.224 4.224 4 C 0.014 3.986 5 C -0.106 4.106 6 C 0.559 3.441 7 O -0.565 6.565 8 N -0.589 5.589 9 C 0.073 3.927 10 C 0.148 3.852 11 H 0.085 0.915 12 C 0.135 3.865 13 N -0.617 5.617 14 C -0.240 4.240 15 H 0.089 0.911 16 C -0.063 4.063 17 N -0.949 5.949 18 Si 0.983 3.017 19 H -0.272 1.272 20 H -0.295 1.295 21 H -0.280 1.280 22 C 0.137 3.863 23 C 0.082 3.918 24 H 0.074 0.926 25 O -0.571 6.571 26 C -0.116 4.116 27 C -0.129 4.129 28 O 0.101 5.899 29 N -0.385 5.385 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.173 0.827 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.028 0.972 38 H 0.057 0.943 39 H 0.249 0.751 40 H 0.087 0.913 41 H -0.011 1.011 42 H 0.392 0.608 43 H 0.111 0.889 44 H 0.126 0.874 45 H 0.135 0.865 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 -9.716 18.457 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.141 4.141 3 C -0.246 4.246 4 C -0.049 4.049 5 C -0.110 4.110 6 C 0.346 3.654 7 O -0.443 6.443 8 N -0.320 5.320 9 C -0.068 4.068 10 C 0.043 3.957 11 H 0.104 0.896 12 C 0.009 3.991 13 N -0.345 5.345 14 C -0.369 4.369 15 H 0.106 0.894 16 C -0.256 4.256 17 N -0.598 5.598 18 Si 0.811 3.189 19 H -0.198 1.198 20 H -0.222 1.222 21 H -0.207 1.207 22 C 0.011 3.989 23 C 0.021 3.979 24 H 0.092 0.908 25 O -0.378 6.378 26 C -0.153 4.153 27 C -0.165 4.165 28 O 0.036 5.964 29 N -0.092 5.092 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.190 0.810 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.105 0.895 41 H 0.007 0.993 42 H 0.241 0.759 43 H 0.129 0.871 44 H 0.144 0.856 45 H 0.153 0.847 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.706 -10.225 18.910 22.837 hybrid contribution 0.207 1.208 -1.720 2.112 sum -7.499 -9.017 17.190 20.809 Atomic orbital electron populations 1.20337 0.83570 1.04732 1.04732 1.24099 1.00595 0.88001 1.01395 1.22601 0.91408 1.01692 1.08882 1.22781 0.95553 0.83469 1.03141 1.19077 0.91805 1.01579 0.98548 1.19514 0.76086 0.87544 0.82248 1.90692 1.50617 1.21030 1.81962 1.47725 1.62603 1.08954 1.12677 1.22030 1.02932 0.78711 1.03165 1.21772 0.94300 0.93104 0.86488 0.89639 1.21605 0.93153 0.99746 0.84644 1.44496 1.03967 1.84276 1.01744 1.19437 0.87399 1.41468 0.88566 0.89371 1.25654 0.99796 1.01906 0.98240 1.69976 1.21952 1.56093 1.11805 0.85079 0.78249 0.78289 0.77252 1.19771 1.22159 1.20666 1.22296 0.83241 0.95895 0.97444 1.23458 0.83081 0.96030 0.95283 0.90796 1.86425 1.26907 1.77184 1.47234 1.23322 1.00014 1.01332 0.90661 1.23476 0.93443 0.99570 1.00030 1.84779 1.21628 1.22090 1.67921 1.73832 0.89536 1.24478 1.21306 0.88372 0.88742 0.90040 0.81000 0.89235 0.90942 0.90312 0.95369 0.92473 0.94149 0.89493 0.99315 0.75873 0.87065 0.85585 0.84725 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.47 71.23 0.75 -0.35 16 2 C 0.02 0.38 7.33 43.58 0.32 0.70 16 3 C -0.22 -5.27 10.99 22.40 0.25 -5.02 16 4 C 0.01 0.33 5.75 25.04 0.14 0.47 16 5 C -0.11 -2.26 1.30 -53.68 -0.07 -2.33 16 6 C 0.56 16.88 6.75 87.66 0.59 17.47 16 7 O -0.56 -21.70 16.46 -3.03 -0.05 -21.75 16 8 N -0.59 -17.71 2.89 -815.98 -2.35 -20.06 16 9 C 0.07 1.69 7.83 127.77 1.00 2.69 16 10 C 0.15 5.60 3.08 46.18 0.14 5.74 16 11 H 0.09 3.73 7.02 -2.39 -0.02 3.71 16 12 C 0.13 5.42 6.87 86.73 0.60 6.01 16 13 N -0.62 -30.84 3.39 -691.98 -2.35 -33.19 16 14 C -0.24 -12.91 10.27 84.04 0.86 -12.05 16 15 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 16 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 17 N -0.95 -54.75 10.09 21.65 0.22 -54.53 16 18 Si 0.98 44.04 29.55 68.60 2.03 46.06 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.14 6.73 5.62 86.86 0.49 7.22 16 23 C 0.08 3.23 3.95 31.99 0.13 3.35 16 24 H 0.07 2.70 6.46 -2.39 -0.02 2.69 16 25 O -0.57 -21.40 13.47 -148.98 -2.01 -23.41 16 26 C -0.12 -1.82 9.92 30.59 0.30 -1.52 16 27 C -0.13 -1.77 8.63 30.59 0.26 -1.50 16 28 O 0.10 2.33 11.15 71.66 0.80 3.13 16 29 N -0.39 -9.50 12.07 -49.55 -0.60 -10.10 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.17 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.09 1.60 7.35 -2.39 -0.02 1.58 16 35 H 0.07 1.84 6.47 -2.39 -0.02 1.82 16 36 H 0.08 1.63 6.53 -2.39 -0.02 1.61 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 2.05 6.83 -2.39 -0.02 2.04 16 39 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 40 H 0.09 4.70 5.88 -2.39 -0.01 4.69 16 41 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 42 H 0.39 11.34 9.12 -74.06 -0.68 10.66 16 43 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.12 1.53 7.63 -2.39 -0.02 1.51 16 Total: -1.00 -72.96 377.25 2.26 -70.70 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.34 Total: 25.25 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 6.23 Total: 17.89 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -5.08 Total: -117.88 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -1.26 Total: -42.03 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.96 2.26 -70.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047501400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.562 kcal (2) G-P(sol) polarization free energy of solvation -72.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds