Wall clock time and date at job start Tue Mar 31 2020 19:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35268 * 126.71096 * 2 1 4 4 C 1.41924 * 103.96078 * 180.02562 * 3 2 1 5 5 O 1.35718 * 126.87690 * 180.02562 * 4 3 2 6 6 C 1.42901 * 116.99599 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46449 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00302 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99803 * 180.02562 * 7 6 5 10 10 C 1.47858 * 122.22585 * 359.70934 * 9 7 6 11 11 C 1.53500 * 111.07605 * 128.30006 * 10 9 7 12 12 C 1.53878 * 111.79213 * 47.69512 * 11 10 9 13 13 C 1.51089 * 107.33798 * 303.72843 * 12 11 10 14 14 H 1.08997 * 108.73927 * 308.52041 * 13 12 11 15 15 C 1.45721 * 122.23234 * 180.02562 * 9 7 6 16 16 H 1.08996 * 111.06631 * 119.45553 * 15 9 7 17 17 C 1.53433 * 116.37726 * 350.09456 * 15 9 7 18 18 C 1.55474 * 101.66728 * 207.26273 * 17 15 9 19 19 N 1.45029 * 118.75152 * 183.59380 * 13 12 11 20 20 C 1.36939 * 126.56292 * 29.03492 * 19 13 12 21 21 H 1.08003 * 119.99950 * 352.99883 * 20 19 13 22 22 C 1.38811 * 120.00015 * 173.00486 * 20 19 13 23 23 N 1.31617 * 120.00231 * 5.64659 * 22 20 19 24 24 Si 1.86802 * 119.99778 * 185.64932 * 22 20 19 25 25 H 1.48497 * 109.47126 * 94.99066 * 24 22 20 26 26 H 1.48504 * 109.46861 * 214.98514 * 24 22 20 27 27 H 1.48495 * 109.47278 * 334.98945 * 24 22 20 28 28 N 1.30617 * 106.24462 * 359.97438 * 4 3 2 29 29 O 1.20918 * 111.49486 * 0.02562 * 28 4 3 30 30 H 1.09007 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46827 * 299.99522 * 1 2 3 32 32 H 1.08996 * 109.47241 * 59.99473 * 1 2 3 33 33 H 1.08002 * 128.01747 * 0.04463 * 3 2 1 34 34 H 1.08992 * 109.47180 * 299.99728 * 6 5 4 35 35 H 1.08993 * 109.47127 * 60.00289 * 6 5 4 36 36 H 1.09004 * 109.16141 * 247.94475 * 10 9 7 37 37 H 1.09000 * 109.16269 * 7.13625 * 10 9 7 38 38 H 1.08991 * 108.41330 * 287.43629 * 11 10 9 39 39 H 1.09005 * 109.40298 * 168.61082 * 11 10 9 40 40 H 1.09002 * 109.88298 * 184.26695 * 12 11 10 41 41 H 1.09004 * 109.88156 * 63.18526 * 12 11 10 42 42 H 1.08999 * 110.98831 * 325.35638 * 17 15 9 43 43 H 1.09001 * 110.98796 * 89.16555 * 17 15 9 44 44 H 1.08997 * 109.95812 * 263.21981 * 18 17 15 45 45 H 1.09004 * 109.98857 * 141.99750 * 18 17 15 46 46 H 0.96997 * 120.00356 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5355 -0.0006 5 8 4.7954 1.2218 -0.0004 6 6 5.9988 0.4512 -0.0005 7 6 7.1879 1.3770 -0.0009 8 8 7.0212 2.5783 -0.0014 9 7 8.4367 0.8700 -0.0016 10 6 8.6968 -0.5855 0.0042 11 6 9.6650 -0.9778 -1.1204 12 6 10.8958 -0.0552 -1.1622 13 6 10.3916 1.3621 -1.3039 14 1 9.6951 1.4039 -2.1412 15 6 9.6206 1.7198 -0.0014 16 1 10.2308 1.5413 0.8840 17 6 9.3847 3.2175 -0.2367 18 6 10.7366 3.6531 -0.8689 19 7 11.3569 2.4348 -1.4476 20 6 12.6027 2.3415 -2.0084 21 1 12.9951 1.3769 -2.2949 22 6 13.3614 3.4866 -2.2084 23 7 12.9324 4.6471 -1.7592 24 14 14.9911 3.3807 -3.1151 25 1 14.7805 3.6974 -4.5505 26 1 15.9479 4.3535 -2.5288 27 1 15.5406 2.0071 -2.9867 28 7 3.4765 -0.7622 -0.0003 29 8 2.3084 -1.0750 -0.0002 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 2.0312 2.1263 0.0007 34 1 6.0277 -0.1776 0.8892 35 1 6.0278 -0.1771 -0.8907 36 1 9.1426 -0.8655 0.9587 37 1 7.7537 -1.1179 -0.1191 38 1 9.1355 -0.9082 -2.0705 39 1 9.9955 -2.0058 -0.9715 40 1 11.5232 -0.3125 -2.0156 41 1 11.4657 -0.1553 -0.2384 42 1 8.5595 3.3784 -0.9304 43 1 9.2083 3.7376 0.7048 44 1 11.3871 4.0745 -0.1025 45 1 10.5610 4.3892 -1.6535 46 1 13.4624 5.4473 -1.8993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049536876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:44 Heat of formation + Delta-G solvation = 39.615809 kcal Electronic energy + Delta-G solvation = -29386.267123 eV Core-core repulsion = 25281.531259 eV Total energy + Delta-G solvation = -4104.735864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.15842 -40.53574 -39.08051 -37.51639 -35.47037 -34.15299 -32.82944 -32.67034 -32.24695 -29.66284 -28.51537 -28.24867 -27.77648 -24.57304 -24.34106 -23.67989 -21.86067 -21.54431 -20.70732 -19.75394 -19.03051 -18.12020 -18.06341 -17.09394 -16.76784 -16.30441 -16.25812 -15.52181 -14.98013 -14.68444 -14.62614 -14.21501 -14.17464 -14.04495 -13.79165 -13.70360 -13.39377 -13.19335 -12.91669 -12.80777 -12.49134 -12.29737 -11.90594 -11.82952 -11.61521 -11.39154 -11.16447 -10.86187 -10.75649 -10.55403 -10.47742 -10.10701 -10.03959 -9.87920 -9.81345 -9.60420 -9.45307 -9.10031 -8.57395 -8.32198 -6.82201 -5.71476 -3.05153 1.11292 2.00985 2.15928 2.62109 2.79564 3.26345 3.40379 3.45263 3.47513 3.91543 4.29253 4.46636 4.49209 4.63252 4.75468 4.81620 4.84588 4.88774 4.94064 4.99112 5.20020 5.21068 5.32599 5.34242 5.41546 5.51445 5.58303 5.61071 5.73442 5.82547 5.94323 6.03976 6.19734 6.25910 6.35571 6.51296 6.66902 6.68784 6.80564 6.87224 7.14456 7.52292 7.58324 7.67755 7.83218 7.96388 8.23591 8.26313 9.18664 9.82724 10.51431 11.41376 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.002372 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.250434 B =11801.866448 C =12397.614151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.233 4.233 4 C 0.216 3.784 5 O -0.255 6.255 6 C 0.047 3.953 7 C 0.519 3.481 8 O -0.508 6.508 9 N -0.595 5.595 10 C 0.107 3.893 11 C -0.129 4.129 12 C -0.116 4.116 13 C 0.159 3.841 14 H 0.019 0.981 15 C 0.118 3.882 16 H 0.083 0.917 17 C -0.131 4.131 18 C 0.172 3.828 19 N -0.592 5.592 20 C -0.228 4.228 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.917 5.917 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 N -0.413 5.413 29 O 0.097 5.903 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.179 0.821 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.045 0.955 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.545 -13.254 5.462 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.254 4.254 4 C 0.018 3.982 5 O -0.159 6.159 6 C -0.032 4.032 7 C 0.305 3.695 8 O -0.383 6.383 9 N -0.330 5.330 10 C -0.016 4.016 11 C -0.168 4.168 12 C -0.155 4.155 13 C 0.049 3.951 14 H 0.036 0.964 15 C 0.014 3.986 16 H 0.101 0.899 17 C -0.169 4.169 18 C 0.048 3.952 19 N -0.317 5.317 20 C -0.356 4.356 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.564 5.564 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.207 1.207 28 N -0.142 5.142 29 O 0.037 5.963 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.196 0.804 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.544 -13.136 5.399 25.804 hybrid contribution 0.809 0.501 -0.481 1.066 sum -20.735 -12.635 4.918 24.774 Atomic orbital electron populations 1.20386 0.83498 1.04904 1.04437 1.24344 0.96474 0.85600 1.00986 1.21806 0.88320 1.01794 1.13525 1.22087 0.88562 0.87992 0.99602 1.86305 1.09986 1.30784 1.88870 1.22590 0.82519 0.93836 1.04254 1.19716 0.83165 0.88760 0.77897 1.90763 1.84793 1.14688 1.48030 1.47900 1.04875 1.07428 1.72792 1.21932 0.99756 0.79868 1.00056 1.22029 0.96628 0.99692 0.98433 1.21446 0.96280 0.95255 1.02496 1.20777 0.91530 0.89136 0.93647 0.96375 1.22502 0.83906 0.92605 0.99598 0.89916 1.22985 1.00189 0.92204 1.01552 1.21753 0.88348 0.88677 0.96426 1.44107 1.13885 1.04237 1.69495 1.18983 0.90517 0.93281 1.32856 0.90330 1.24838 0.99041 0.95435 1.00977 1.69956 1.38609 0.98290 1.49562 0.86137 0.83127 0.77092 0.79622 1.21645 1.21778 1.20655 1.74154 0.97900 1.14249 1.27849 1.84790 1.10319 1.32001 1.69171 0.89626 0.88861 0.88849 0.80351 0.88903 0.88841 0.91146 0.90482 0.91844 0.90622 0.91238 0.91689 0.89933 0.91966 0.93115 0.93696 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 36.01 0.38 0.16 16 2 C -0.01 -0.08 7.48 -35.36 -0.26 -0.34 16 3 C -0.23 -2.24 11.10 -39.23 -0.44 -2.68 16 4 C 0.22 2.76 8.01 -16.66 -0.13 2.62 16 5 O -0.25 -3.78 9.74 -38.77 -0.38 -4.16 16 6 C 0.05 0.61 4.56 36.01 0.16 0.78 16 7 C 0.52 8.54 7.77 -10.98 -0.09 8.45 16 8 O -0.51 -10.33 13.33 -14.35 -0.19 -10.52 16 9 N -0.60 -9.30 2.91 -163.49 -0.48 -9.78 16 10 C 0.11 1.23 6.37 -3.04 -0.02 1.21 16 11 C -0.13 -1.59 5.95 -26.01 -0.15 -1.74 16 12 C -0.12 -1.95 5.41 -27.24 -0.15 -2.10 16 13 C 0.16 3.30 2.58 -68.33 -0.18 3.12 16 14 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 15 C 0.12 2.23 3.32 -66.78 -0.22 2.01 16 16 H 0.08 1.57 8.13 -51.93 -0.42 1.14 16 17 C -0.13 -2.82 5.01 -25.19 -0.13 -2.94 16 18 C 0.17 4.39 5.46 -1.65 -0.01 4.38 16 19 N -0.59 -15.21 3.35 -163.19 -0.55 -15.76 16 20 C -0.23 -6.30 9.94 -15.06 -0.15 -6.45 16 21 H 0.08 2.07 7.25 -52.48 -0.38 1.69 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -27.30 10.51 55.49 0.58 -26.72 16 24 Si 0.91 22.17 29.56 -169.99 -5.02 17.14 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 N -0.41 -5.08 11.54 30.38 0.35 -4.73 16 29 O 0.10 0.99 11.19 17.07 0.19 1.18 16 30 H 0.08 0.16 8.14 -51.92 -0.42 -0.26 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.09 1.02 8.01 -51.93 -0.42 0.61 16 35 H 0.09 1.08 7.77 -51.93 -0.40 0.68 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.69 6.18 -51.93 -0.32 0.37 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 41 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 42 H 0.08 1.88 6.21 -51.93 -0.32 1.56 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.05 1.39 7.45 -51.93 -0.39 1.01 16 45 H 0.04 1.26 7.62 -51.93 -0.40 0.87 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -34.65 368.16 -8.22 -42.87 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.80 Total: -1.28 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -1.48 Total: 6.21 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.09 Total: -56.98 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.38 Total: -13.51 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.65 -8.22 -42.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049536876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.490 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds