Wall clock time and date at job start Tue Mar 31 2020 19:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35268 * 126.71096 * 2 1 4 4 C 1.41924 * 103.96078 * 180.02562 * 3 2 1 5 5 O 1.35718 * 126.87690 * 180.02562 * 4 3 2 6 6 C 1.42901 * 116.99599 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46449 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00302 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99803 * 180.02562 * 7 6 5 10 10 C 1.47858 * 122.22585 * 359.70934 * 9 7 6 11 11 C 1.53500 * 111.07605 * 128.30006 * 10 9 7 12 12 C 1.53878 * 111.79213 * 47.69512 * 11 10 9 13 13 C 1.51089 * 107.33798 * 303.72843 * 12 11 10 14 14 H 1.08997 * 108.73927 * 308.52041 * 13 12 11 15 15 C 1.45721 * 122.23234 * 180.02562 * 9 7 6 16 16 H 1.08996 * 111.06631 * 119.45553 * 15 9 7 17 17 C 1.53433 * 116.37726 * 350.09456 * 15 9 7 18 18 C 1.55474 * 101.66728 * 207.26273 * 17 15 9 19 19 N 1.45029 * 118.75152 * 183.59380 * 13 12 11 20 20 C 1.36939 * 126.56292 * 29.03492 * 19 13 12 21 21 H 1.08003 * 119.99950 * 352.99883 * 20 19 13 22 22 C 1.38811 * 120.00015 * 173.00486 * 20 19 13 23 23 N 1.31617 * 120.00231 * 5.64659 * 22 20 19 24 24 Si 1.86802 * 119.99778 * 185.64932 * 22 20 19 25 25 H 1.48497 * 109.47126 * 94.99066 * 24 22 20 26 26 H 1.48504 * 109.46861 * 214.98514 * 24 22 20 27 27 H 1.48495 * 109.47278 * 334.98945 * 24 22 20 28 28 N 1.30617 * 106.24462 * 359.97438 * 4 3 2 29 29 O 1.20918 * 111.49486 * 0.02562 * 28 4 3 30 30 H 1.09007 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46827 * 299.99522 * 1 2 3 32 32 H 1.08996 * 109.47241 * 59.99473 * 1 2 3 33 33 H 1.08002 * 128.01747 * 0.04463 * 3 2 1 34 34 H 1.08992 * 109.47180 * 299.99728 * 6 5 4 35 35 H 1.08993 * 109.47127 * 60.00289 * 6 5 4 36 36 H 1.09004 * 109.16141 * 247.94475 * 10 9 7 37 37 H 1.09000 * 109.16269 * 7.13625 * 10 9 7 38 38 H 1.08991 * 108.41330 * 287.43629 * 11 10 9 39 39 H 1.09005 * 109.40298 * 168.61082 * 11 10 9 40 40 H 1.09002 * 109.88298 * 184.26695 * 12 11 10 41 41 H 1.09004 * 109.88156 * 63.18526 * 12 11 10 42 42 H 1.08999 * 110.98831 * 325.35638 * 17 15 9 43 43 H 1.09001 * 110.98796 * 89.16555 * 17 15 9 44 44 H 1.08997 * 109.95812 * 263.21981 * 18 17 15 45 45 H 1.09004 * 109.98857 * 141.99750 * 18 17 15 46 46 H 0.96997 * 120.00356 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5355 -0.0006 5 8 4.7954 1.2218 -0.0004 6 6 5.9988 0.4512 -0.0005 7 6 7.1879 1.3770 -0.0009 8 8 7.0212 2.5783 -0.0014 9 7 8.4367 0.8700 -0.0016 10 6 8.6968 -0.5855 0.0042 11 6 9.6650 -0.9778 -1.1204 12 6 10.8958 -0.0552 -1.1622 13 6 10.3916 1.3621 -1.3039 14 1 9.6951 1.4039 -2.1412 15 6 9.6206 1.7198 -0.0014 16 1 10.2308 1.5413 0.8840 17 6 9.3847 3.2175 -0.2367 18 6 10.7366 3.6531 -0.8689 19 7 11.3569 2.4348 -1.4476 20 6 12.6027 2.3415 -2.0084 21 1 12.9951 1.3769 -2.2949 22 6 13.3614 3.4866 -2.2084 23 7 12.9324 4.6471 -1.7592 24 14 14.9911 3.3807 -3.1151 25 1 14.7805 3.6974 -4.5505 26 1 15.9479 4.3535 -2.5288 27 1 15.5406 2.0071 -2.9867 28 7 3.4765 -0.7622 -0.0003 29 8 2.3084 -1.0750 -0.0002 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 2.0312 2.1263 0.0007 34 1 6.0277 -0.1776 0.8892 35 1 6.0278 -0.1771 -0.8907 36 1 9.1426 -0.8655 0.9587 37 1 7.7537 -1.1179 -0.1191 38 1 9.1355 -0.9082 -2.0705 39 1 9.9955 -2.0058 -0.9715 40 1 11.5232 -0.3125 -2.0156 41 1 11.4657 -0.1553 -0.2384 42 1 8.5595 3.3784 -0.9304 43 1 9.2083 3.7376 0.7048 44 1 11.3871 4.0745 -0.1025 45 1 10.5610 4.3892 -1.6535 46 1 13.4624 5.4473 -1.8993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049536876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:43 Heat of formation + Delta-G solvation = 15.808871 kcal Electronic energy + Delta-G solvation = -29387.299469 eV Core-core repulsion = 25281.531259 eV Total energy + Delta-G solvation = -4105.768210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.93883 -41.88723 -40.24236 -38.94047 -37.00357 -34.78255 -34.32743 -33.97494 -33.54150 -31.32767 -29.95911 -29.39387 -28.54635 -26.41633 -25.83185 -24.47524 -23.00598 -22.91360 -22.05697 -21.49942 -20.30165 -18.99722 -18.91814 -18.50556 -17.97806 -17.47417 -17.40914 -17.09495 -16.64443 -16.16442 -15.88128 -15.64355 -15.40348 -15.01278 -14.88517 -14.64430 -14.35679 -14.23087 -14.12879 -13.90032 -13.79933 -13.42045 -13.21467 -13.20961 -12.95124 -12.87814 -12.75518 -12.33515 -12.17350 -12.09093 -11.98879 -11.82314 -11.76753 -11.59088 -11.49520 -10.79713 -10.51550 -10.49954 -10.26851 -9.69016 -8.93187 -7.87753 -5.24133 0.44731 1.13540 1.19184 1.36602 1.44244 1.46988 1.55558 2.06537 2.30651 2.48567 3.08683 3.16913 3.31759 3.43037 3.79562 3.80512 3.89675 3.91286 3.95882 3.99138 3.99499 4.00251 4.19043 4.30425 4.38997 4.51042 4.52184 4.61186 4.70634 4.78962 4.80825 4.85817 4.91369 4.97317 5.04251 5.11539 5.25491 5.28569 5.36134 5.46490 5.53348 5.55876 5.67042 5.83823 6.14924 6.29804 6.97018 7.02333 7.21707 7.72429 8.43097 9.25126 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.002372 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.250434 B =11801.866448 C =12397.614151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.012 3.988 3 C -0.254 4.254 4 C 0.190 3.810 5 O -0.282 6.282 6 C 0.057 3.943 7 C 0.514 3.486 8 O -0.558 6.558 9 N -0.593 5.593 10 C 0.100 3.900 11 C -0.120 4.120 12 C -0.112 4.112 13 C 0.152 3.848 14 H -0.002 1.002 15 C 0.133 3.867 16 H 0.089 0.911 17 C -0.115 4.115 18 C 0.183 3.817 19 N -0.612 5.612 20 C -0.233 4.233 21 H 0.091 0.909 22 C -0.071 4.071 23 N -0.954 5.954 24 Si 0.980 3.020 25 H -0.291 1.291 26 H -0.296 1.296 27 H -0.261 1.261 28 N -0.428 5.428 29 O 0.093 5.907 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.192 0.808 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.116 0.884 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.022 0.978 45 H 0.004 0.996 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.360 -16.958 5.943 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.052 4.052 3 C -0.276 4.276 4 C -0.007 4.007 5 O -0.188 6.188 6 C -0.021 4.021 7 C 0.302 3.698 8 O -0.436 6.436 9 N -0.327 5.327 10 C -0.021 4.021 11 C -0.158 4.158 12 C -0.150 4.150 13 C 0.044 3.956 14 H 0.016 0.984 15 C 0.028 3.972 16 H 0.107 0.893 17 C -0.153 4.153 18 C 0.058 3.942 19 N -0.337 5.337 20 C -0.362 4.362 21 H 0.109 0.891 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.808 3.192 25 H -0.218 1.218 26 H -0.223 1.223 27 H -0.185 1.185 28 N -0.156 5.156 29 O 0.034 5.966 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.210 0.790 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.040 0.960 45 H 0.022 0.978 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -23.381 -16.933 5.882 29.461 hybrid contribution 1.235 1.633 -0.645 2.146 sum -22.145 -15.300 5.237 27.422 Atomic orbital electron populations 1.20684 0.79866 1.06499 1.06085 1.25115 0.98030 0.84047 0.97977 1.22150 0.87496 1.03177 1.14766 1.22447 0.88607 0.88680 1.00991 1.86246 1.10987 1.32144 1.89460 1.22533 0.80671 0.92616 1.06240 1.20369 0.84154 0.88700 0.76626 1.90738 1.85571 1.17031 1.50239 1.47960 1.03618 1.08933 1.72179 1.22331 1.01687 0.77057 1.00998 1.22012 0.94517 1.00476 0.98815 1.21425 0.98400 0.93042 1.02166 1.20969 0.90434 0.90525 0.93668 0.98411 1.22103 0.85340 0.91011 0.98750 0.89279 1.22701 0.96995 0.94803 1.00823 1.21439 0.89873 0.88445 0.94469 1.44367 1.14162 1.05721 1.69403 1.19425 0.91144 0.93715 1.31883 0.89096 1.25754 1.02992 0.95230 1.02364 1.70185 1.40009 0.98836 1.51242 0.85039 0.78747 0.77732 0.77714 1.21814 1.22319 1.18528 1.74123 0.99031 1.14032 1.28447 1.84746 1.10085 1.32840 1.68969 0.88083 0.86978 0.87111 0.79038 0.86312 0.87024 0.88743 0.86881 0.92061 0.86619 0.92286 0.91350 0.91351 0.91633 0.95987 0.97813 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.45 71.24 0.74 0.57 16 2 C 0.01 0.15 7.48 25.00 0.19 0.34 16 3 C -0.25 -4.57 11.10 22.50 0.25 -4.32 16 4 C 0.19 4.67 8.01 85.79 0.69 5.36 16 5 O -0.28 -8.27 9.74 -71.36 -0.69 -8.97 16 6 C 0.06 1.40 4.56 71.24 0.32 1.72 16 7 C 0.51 16.54 7.77 87.66 0.68 17.22 16 8 O -0.56 -23.29 13.33 16.01 0.21 -23.08 16 9 N -0.59 -17.58 2.91 -789.56 -2.30 -19.88 16 10 C 0.10 1.89 6.37 86.29 0.55 2.44 16 11 C -0.12 -2.49 5.95 31.06 0.18 -2.30 16 12 C -0.11 -3.55 5.41 30.27 0.16 -3.39 16 13 C 0.15 6.38 2.58 45.52 0.12 6.50 16 14 H 0.00 -0.07 8.05 -2.39 -0.02 -0.09 16 15 C 0.13 5.04 3.32 46.16 0.15 5.20 16 16 H 0.09 3.31 8.13 -2.39 -0.02 3.29 16 17 C -0.11 -5.19 5.01 31.59 0.16 -5.03 16 18 C 0.18 9.95 5.46 86.85 0.47 10.43 16 19 N -0.61 -32.55 3.35 -670.21 -2.25 -34.80 16 20 C -0.23 -13.12 9.94 84.03 0.84 -12.28 16 21 H 0.09 4.78 7.25 -2.91 -0.02 4.75 16 22 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 23 N -0.95 -59.67 10.51 21.65 0.23 -59.44 16 24 Si 0.98 46.51 29.56 68.60 2.03 48.54 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 27 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 28 N -0.43 -9.81 11.54 -172.59 -1.99 -11.80 16 29 O 0.09 1.71 11.19 71.25 0.80 2.51 16 30 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 31 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.12 2.25 8.01 -2.39 -0.02 2.23 16 35 H 0.11 2.29 7.77 -2.39 -0.02 2.27 16 36 H 0.09 1.44 8.14 -2.38 -0.02 1.43 16 37 H 0.11 1.42 6.18 -2.39 -0.01 1.41 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.06 1.99 7.69 -2.39 -0.02 1.97 16 41 H 0.07 2.13 8.11 -2.38 -0.02 2.11 16 42 H 0.07 3.31 6.21 -2.39 -0.01 3.29 16 43 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 44 H 0.02 1.29 7.45 -2.39 -0.02 1.28 16 45 H 0.00 0.22 7.62 -2.38 -0.02 0.20 16 46 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -81.77 368.16 3.00 -78.78 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.99 Total: 9.35 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 5.98 Total: 18.79 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -6.31 Total: -125.92 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: 0.32 Total: -29.53 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -81.77 3.00 -78.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049536876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.584 kcal (2) G-P(sol) polarization free energy of solvation -81.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds