Wall clock time and date at job start Tue Mar 31 2020 19:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35271 * 126.71153 * 2 1 4 4 C 1.41929 * 103.96023 * 180.02562 * 3 2 1 5 5 O 1.35711 * 126.87596 * 179.97438 * 4 3 2 6 6 C 1.42897 * 116.99498 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46818 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00011 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99893 * 179.97438 * 7 6 5 10 10 C 1.45728 * 117.75934 * 359.73512 * 9 7 6 11 11 C 1.53371 * 109.37876 * 141.02184 * 10 9 7 12 12 C 1.52938 * 108.38773 * 54.08758 * 11 10 9 13 13 C 1.52922 * 109.79281 * 293.86784 * 12 11 10 14 14 H 1.09002 * 111.27095 * 293.35185 * 13 12 11 15 15 C 1.44185 * 117.75796 * 179.97438 * 9 7 6 16 16 H 1.09000 * 109.22596 * 332.58776 * 15 9 7 17 17 C 1.54068 * 111.76654 * 93.48063 * 15 9 7 18 18 C 1.54045 * 103.74845 * 153.24709 * 17 15 9 19 19 N 1.46884 * 107.70849 * 342.87607 * 18 17 15 20 20 C 1.36944 * 125.57970 * 177.01413 * 19 18 17 21 21 H 1.07997 * 119.99710 * 175.73244 * 20 19 18 22 22 C 1.38810 * 120.00241 * 355.73539 * 20 19 18 23 23 N 1.31629 * 119.99628 * 7.45227 * 22 20 19 24 24 Si 1.86797 * 120.00163 * 187.45620 * 22 20 19 25 25 H 1.48492 * 109.47333 * 94.98580 * 24 22 20 26 26 H 1.48497 * 109.46966 * 214.98752 * 24 22 20 27 27 H 1.48497 * 109.46904 * 334.98273 * 24 22 20 28 28 N 1.30613 * 106.24016 * 0.24320 * 4 3 2 29 29 O 1.20916 * 111.50024 * 359.57192 * 28 4 3 30 30 H 1.09000 * 109.47725 * 89.99038 * 1 2 3 31 31 H 1.09000 * 109.47310 * 210.00047 * 1 2 3 32 32 H 1.09002 * 109.46628 * 329.99395 * 1 2 3 33 33 H 1.08004 * 128.01736 * 0.05140 * 3 2 1 34 34 H 1.09003 * 109.47416 * 299.99448 * 6 5 4 35 35 H 1.09002 * 109.47744 * 59.99967 * 6 5 4 36 36 H 1.09009 * 109.45715 * 261.16286 * 10 9 7 37 37 H 1.09002 * 109.45964 * 21.10709 * 10 9 7 38 38 H 1.09004 * 109.79616 * 294.34889 * 11 10 9 39 39 H 1.08999 * 109.74190 * 173.78980 * 11 10 9 40 40 H 1.09003 * 109.41697 * 173.77392 * 12 11 10 41 41 H 1.08994 * 109.41597 * 53.96978 * 12 11 10 42 42 H 1.08999 * 110.57259 * 271.81802 * 17 15 9 43 43 H 1.09002 * 110.56782 * 34.53442 * 17 15 9 44 44 H 1.09003 * 109.80979 * 102.43117 * 18 17 15 45 45 H 1.09002 * 109.81023 * 223.25781 * 18 17 15 46 46 H 0.97002 * 119.99377 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5355 -0.0006 5 8 4.7953 1.2217 -0.0013 6 6 5.9988 0.4511 -0.0024 7 6 7.1879 1.3769 -0.0025 8 8 7.0213 2.5782 -0.0021 9 7 8.4367 0.8698 -0.0029 10 6 8.5804 -0.5804 0.0026 11 6 9.7480 -0.9796 -0.9082 12 6 10.9919 -0.2086 -0.4639 13 6 10.7931 1.2861 -0.7187 14 1 10.7394 1.5017 -1.7858 15 6 9.5390 1.7993 -0.0035 16 1 9.2242 2.7290 -0.4774 17 6 10.0323 2.1014 1.4244 18 6 11.5120 2.4821 1.2277 19 7 11.9223 2.0085 -0.1008 20 6 13.1511 2.2053 -0.6724 21 1 13.3799 1.7578 -1.6282 22 6 14.1025 2.9801 -0.0232 23 7 13.8810 3.4035 1.2033 24 14 15.6971 3.4218 -0.8902 25 1 15.5607 4.7559 -1.5278 26 1 16.8047 3.4565 0.0983 27 1 15.9934 2.4040 -1.9301 28 7 3.4764 -0.7622 -0.0062 29 8 2.3084 -1.0749 -0.0006 30 1 -0.3634 0.0002 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 2.0312 2.1263 0.0008 34 1 6.0284 -0.1777 0.8874 35 1 6.0271 -0.1774 -0.8926 36 1 8.7754 -0.9221 1.0193 37 1 7.6614 -1.0378 -0.3638 38 1 9.5118 -0.7292 -1.9424 39 1 9.9315 -2.0507 -0.8236 40 1 11.8565 -0.5602 -1.0269 41 1 11.1610 -0.3756 0.5998 42 1 9.4762 2.9349 1.8535 43 1 9.9427 1.2173 2.0556 44 1 11.6257 3.5646 1.2854 45 1 12.1213 2.0053 1.9955 46 1 14.5457 3.9452 1.6568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049536877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:48 Heat of formation + Delta-G solvation = 32.228779 kcal Electronic energy + Delta-G solvation = -29250.327020 eV Core-core repulsion = 25145.270831 eV Total energy + Delta-G solvation = -4105.056189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.18227 -40.69182 -39.11946 -37.69051 -35.48340 -34.17982 -32.85531 -32.65969 -32.34716 -29.73150 -28.74242 -28.31244 -27.75629 -24.52853 -24.43105 -23.70607 -22.15506 -21.77302 -20.43314 -19.92780 -18.42658 -18.14448 -18.07136 -17.18760 -16.93823 -16.81195 -16.39220 -15.79449 -14.81359 -14.68017 -14.58765 -14.31557 -14.19796 -13.94447 -13.87576 -13.69776 -13.49120 -13.15339 -12.99620 -12.85020 -12.55814 -12.16505 -12.05445 -11.87544 -11.44697 -11.37999 -11.11219 -10.99862 -10.82891 -10.68968 -10.53740 -10.14285 -10.09147 -9.84332 -9.71100 -9.60842 -9.59422 -9.47729 -8.58792 -8.42854 -6.88662 -5.74473 -3.07861 1.09176 1.98494 2.13511 2.53394 2.77187 3.25672 3.39633 3.44797 3.46622 3.88954 4.25915 4.43296 4.46687 4.59983 4.72505 4.79720 4.84994 4.88374 4.92401 5.04056 5.18779 5.20706 5.31633 5.35148 5.41836 5.48787 5.55774 5.58334 5.64372 5.84819 5.94304 6.03521 6.17918 6.25969 6.33030 6.51425 6.54945 6.65988 6.72015 6.92754 7.04227 7.38174 7.54618 7.62540 7.81316 7.93994 8.15894 8.23565 9.18515 9.78608 10.43566 11.36928 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.033698 B = 0.002235 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.705136 B =12522.304910 C =12946.170973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.232 4.232 4 C 0.215 3.785 5 O -0.256 6.256 6 C 0.048 3.952 7 C 0.508 3.492 8 O -0.516 6.516 9 N -0.581 5.581 10 C 0.103 3.897 11 C -0.131 4.131 12 C -0.131 4.131 13 C 0.161 3.839 14 H 0.056 0.944 15 C 0.136 3.864 16 H 0.094 0.906 17 C -0.150 4.150 18 C 0.179 3.821 19 N -0.595 5.595 20 C -0.229 4.229 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.917 5.917 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 N -0.412 5.412 29 O 0.097 5.903 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.179 0.821 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.041 0.959 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.026 -10.854 -1.730 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.254 4.254 4 C 0.017 3.983 5 O -0.161 6.161 6 C -0.031 4.031 7 C 0.293 3.707 8 O -0.391 6.391 9 N -0.314 5.314 10 C -0.019 4.019 11 C -0.169 4.169 12 C -0.171 4.171 13 C 0.053 3.947 14 H 0.074 0.926 15 C 0.032 3.968 16 H 0.112 0.888 17 C -0.190 4.190 18 C 0.054 3.946 19 N -0.320 5.320 20 C -0.357 4.357 21 H 0.097 0.903 22 C -0.202 4.202 23 N -0.564 5.564 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 N -0.140 5.140 29 O 0.037 5.963 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.196 0.804 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.923 -10.781 -1.667 26.293 hybrid contribution 0.807 0.757 -0.295 1.145 sum -23.116 -10.024 -1.962 25.272 Atomic orbital electron populations 1.20382 0.83486 1.04942 1.04402 1.24347 0.96483 0.85596 1.00951 1.21821 0.88308 1.01760 1.13530 1.22075 0.88528 0.88022 0.99683 1.86300 1.10017 1.30842 1.88909 1.22617 0.82353 0.93687 1.04448 1.19956 0.83926 0.88888 0.77925 1.90753 1.85227 1.15049 1.48084 1.47001 1.05052 1.06881 1.72470 1.21678 0.99794 0.79615 1.00860 1.21888 0.95552 1.00308 0.99196 1.22124 0.96053 0.97145 1.01789 1.20900 0.86900 0.90965 0.95962 0.92590 1.21171 0.85730 0.91947 0.97934 0.88844 1.22994 0.99913 1.00569 0.95500 1.21068 0.87109 0.99153 0.87314 1.44495 1.09063 1.63360 1.15050 1.19010 0.88234 1.26027 1.02439 0.90336 1.24832 0.98740 1.00127 0.96525 1.69993 1.35201 1.40270 1.10963 0.86114 0.82804 0.78474 0.78457 1.21584 1.21796 1.20634 1.74157 0.97908 1.14222 1.27753 1.84785 1.10307 1.31981 1.69182 0.89075 0.89525 0.88753 0.80364 0.88654 0.88606 0.91332 0.90580 0.91542 0.90876 0.91696 0.91843 0.91843 0.92525 0.92927 0.94084 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 36.01 0.38 0.17 16 2 C -0.01 -0.07 7.48 -35.37 -0.26 -0.34 16 3 C -0.23 -2.16 11.10 -39.23 -0.44 -2.60 16 4 C 0.21 2.67 8.01 -16.66 -0.13 2.54 16 5 O -0.26 -3.71 9.74 -38.75 -0.38 -4.09 16 6 C 0.05 0.60 4.47 36.01 0.16 0.76 16 7 C 0.51 8.17 7.66 -10.98 -0.08 8.09 16 8 O -0.52 -10.46 15.78 -14.35 -0.23 -10.68 16 9 N -0.58 -8.98 2.79 -167.39 -0.47 -9.44 16 10 C 0.10 1.22 6.08 -4.27 -0.03 1.20 16 11 C -0.13 -1.63 6.11 -26.57 -0.16 -1.80 16 12 C -0.13 -2.23 5.31 -26.80 -0.14 -2.38 16 13 C 0.16 3.26 3.29 -67.25 -0.22 3.03 16 14 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.14 2.58 2.72 -68.49 -0.19 2.39 16 16 H 0.09 1.98 7.10 -51.93 -0.37 1.61 16 17 C -0.15 -3.01 6.45 -25.63 -0.17 -3.17 16 18 C 0.18 4.38 5.40 -3.29 -0.02 4.36 16 19 N -0.60 -14.87 2.93 -163.80 -0.48 -15.35 16 20 C -0.23 -6.26 10.26 -15.06 -0.15 -6.41 16 21 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 22 C -0.01 -0.16 5.47 -17.43 -0.10 -0.25 16 23 N -0.92 -26.88 10.34 55.49 0.57 -26.30 16 24 Si 0.91 22.04 29.56 -169.99 -5.02 17.02 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 N -0.41 -4.94 11.54 30.38 0.35 -4.59 16 29 O 0.10 0.97 11.19 17.07 0.19 1.16 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 33 H 0.18 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.10 1.04 8.02 -51.93 -0.42 0.63 16 35 H 0.10 1.03 7.33 -51.93 -0.38 0.65 16 36 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.08 0.69 5.81 -51.93 -0.30 0.39 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 1.16 8.02 -51.93 -0.42 0.74 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.44 7.22 -51.93 -0.38 1.07 16 45 H 0.04 1.10 7.65 -51.93 -0.40 0.70 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -33.99 372.23 -8.26 -42.25 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.85 Total: -1.18 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -1.55 Total: 5.60 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.02 Total: -55.69 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.41 Total: -13.61 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.99 -8.26 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049536877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.478 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds